Wall clock time and date at job start Sat Apr 11 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00381 * 269.99655 * 10 9 7 12 12 C 1.53002 * 109.46810 * 90.00065 * 11 10 9 13 13 C 1.53002 * 117.49875 * 243.62335 * 12 11 10 14 14 C 1.52999 * 117.49621 * 175.00094 * 12 11 10 15 15 C 1.34781 * 119.99786 * 90.00095 * 10 9 7 16 16 O 1.21281 * 120.00142 * 359.97438 * 15 10 9 17 17 C 1.50703 * 120.00021 * 179.97438 * 15 10 9 18 18 N 1.46498 * 109.47103 * 179.97438 * 17 15 10 19 19 C 1.35016 * 126.03466 * 125.00163 * 18 17 15 20 20 C 1.35360 * 107.73184 * 179.97438 * 19 18 17 21 21 Br 1.89105 * 126.04690 * 179.97438 * 20 19 18 22 22 C 1.39919 * 107.90952 * 359.97438 * 20 19 18 23 23 N 1.30844 * 108.20795 * 359.75612 * 22 20 19 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.08992 * 109.47334 * 209.99920 * 11 10 9 28 28 H 1.08994 * 109.46680 * 330.00544 * 11 10 9 29 29 H 1.09004 * 115.54776 * 29.33368 * 12 11 10 30 30 H 1.09001 * 117.49844 * 0.02562 * 13 12 11 31 31 H 1.09006 * 117.49553 * 145.02358 * 13 12 11 32 32 H 1.09003 * 117.49630 * 214.97900 * 14 12 11 33 33 H 1.08991 * 117.50023 * 0.02562 * 14 12 11 34 34 H 1.09000 * 109.47031 * 299.99740 * 17 15 10 35 35 H 1.08999 * 109.46714 * 59.99599 * 17 15 10 36 36 H 1.08001 * 126.13483 * 359.94224 * 19 18 17 37 37 H 1.08004 * 125.89333 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.2434 -3.2664 1.2686 12 6 2.9682 -3.9877 1.7096 13 6 2.3123 -3.5293 3.0137 14 6 3.0505 -4.8683 2.9581 15 6 4.2247 -3.2105 -1.1674 16 8 4.0226 -2.6387 -2.2177 17 6 4.7275 -4.6312 -1.1676 18 7 4.8901 -5.0915 -2.5488 19 6 6.0184 -5.5993 -3.0892 20 6 5.7559 -5.9030 -4.3819 21 35 6.9766 -6.6461 -5.6204 22 6 4.4216 -5.5699 -4.6398 23 7 3.9005 -5.0887 -3.5403 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 5.0452 -3.9931 1.1383 28 1 4.5312 -2.5399 2.0284 29 1 2.3116 -4.3166 0.9040 30 1 2.7890 -2.7135 3.5572 31 1 1.2238 -3.5564 3.0662 32 1 2.4477 -5.7763 2.9741 33 1 4.0129 -4.9334 3.4654 34 1 5.6877 -4.6768 -0.6536 35 1 4.0097 -5.2706 -0.6539 36 1 6.9614 -5.7377 -2.5813 37 1 3.9092 -5.6925 -5.5826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264018882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:07 Heat of formation + Delta-G solvation = 62.047598 kcal Electronic energy + Delta-G solvation = -21594.931428 eV Core-core repulsion = 18228.016039 eV Total energy + Delta-G solvation = -3366.915389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.33580 -40.72115 -38.36434 -36.14296 -34.79595 -34.36338 -32.57335 -31.03929 -30.00497 -28.20930 -27.44996 -24.48567 -23.11120 -22.42424 -21.95695 -21.78922 -20.16093 -19.03759 -18.40912 -18.09491 -17.05526 -16.71018 -16.23986 -15.97024 -15.58796 -15.23968 -14.93642 -14.62267 -14.51326 -14.18345 -14.10124 -13.69672 -13.53286 -13.37315 -13.02531 -12.61768 -12.51484 -12.25362 -11.99493 -11.98761 -11.89319 -11.68130 -11.27723 -11.07450 -10.98850 -10.83236 -10.68265 -10.42276 -9.48701 -9.41049 -8.31147 -6.34057 0.60929 0.79694 1.29798 1.34788 1.41573 1.55571 1.60733 1.63585 2.23574 2.30649 3.01107 3.03280 3.40217 3.61236 3.79814 3.91904 3.99382 4.07566 4.15265 4.24313 4.46596 4.50570 4.60091 4.61432 4.72327 4.86074 4.90088 4.92376 5.15101 5.32827 5.36080 5.37519 5.47676 5.60977 5.81607 6.26150 6.56575 6.59763 6.68287 7.21863 7.34860 8.85988 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.003027 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.558599 B = 9247.848860 C =10416.398870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.942 3.058 4 H -0.283 1.283 5 H -0.278 1.278 6 H -0.234 1.234 7 C -0.518 4.518 8 H 0.030 0.970 9 C 0.227 3.773 10 N -0.591 5.591 11 C 0.139 3.861 12 C -0.178 4.178 13 C -0.189 4.189 14 C -0.139 4.139 15 C 0.486 3.514 16 O -0.573 6.573 17 C 0.121 3.879 18 N -0.357 5.357 19 C 0.107 3.893 20 C -0.257 4.257 21 Br -0.011 7.011 22 C 0.061 3.939 23 N -0.311 5.311 24 H 0.265 0.735 25 H 0.014 0.986 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.184 0.816 35 H 0.131 0.869 36 H 0.229 0.771 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.103 -16.862 0.189 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.766 3.234 4 H -0.209 1.209 5 H -0.204 1.204 6 H -0.157 1.157 7 C -0.556 4.556 8 H 0.048 0.952 9 C 0.105 3.895 10 N -0.322 5.322 11 C 0.017 3.983 12 C -0.198 4.198 13 C -0.227 4.227 14 C -0.176 4.176 15 C 0.273 3.727 16 O -0.452 6.452 17 C -0.003 4.003 18 N -0.138 5.138 19 C -0.042 4.042 20 C -0.348 4.348 21 Br 0.072 6.928 22 C -0.127 4.127 23 N -0.131 5.131 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.201 0.799 35 H 0.148 0.852 36 H 0.245 0.755 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 19.214 -16.164 -0.065 25.109 hybrid contribution -0.701 1.057 -0.537 1.377 sum 18.513 -15.107 -0.602 23.903 Atomic orbital electron populations 1.70060 1.08225 1.27942 1.52698 1.25807 0.95568 1.03107 0.94402 0.85804 0.80118 0.78909 0.78614 1.20887 1.20351 1.15653 1.21483 0.91470 0.92968 1.49713 0.95214 1.19330 0.92847 0.80383 0.96966 1.47933 1.63684 1.14472 1.06111 1.21520 0.95555 0.96667 0.84583 1.22620 1.00339 1.04817 0.91995 1.22891 0.98940 0.99660 1.01175 1.23076 1.03035 0.93264 0.98258 1.21183 0.78630 0.89226 0.83702 1.90743 1.53172 1.68411 1.32862 1.21969 1.08104 0.91806 0.78414 1.48279 1.08195 1.47333 1.10036 1.23095 0.92893 0.95098 0.93126 1.21901 0.96302 1.20596 0.96034 1.96575 1.56800 1.82919 1.56505 1.24234 0.93405 0.96870 0.98193 1.77686 1.15172 1.22286 0.97956 0.92610 0.96830 0.92932 0.85623 0.88944 0.91373 0.88383 0.91767 0.88404 0.85379 0.79931 0.85177 0.75480 0.78338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 2 C 0.01 0.50 5.47 84.66 0.46 0.96 16 3 Si 0.94 44.66 27.47 68.60 1.88 46.54 16 4 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.23 -9.71 6.54 99.48 0.65 -9.06 16 7 C -0.52 -29.96 9.94 25.60 0.25 -29.71 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 9 C 0.23 10.60 4.27 85.63 0.37 10.97 16 10 N -0.59 -21.57 2.46 -826.15 -2.03 -23.60 16 11 C 0.14 3.32 5.54 86.38 0.48 3.80 16 12 C -0.18 -4.90 5.94 -10.79 -0.06 -4.97 16 13 C -0.19 -5.38 10.18 30.60 0.31 -5.07 16 14 C -0.14 -2.62 10.25 30.60 0.31 -2.31 16 15 C 0.49 18.20 7.70 87.66 0.68 18.87 16 16 O -0.57 -28.82 15.30 -3.03 -0.05 -28.87 16 17 C 0.12 2.81 5.54 85.63 0.47 3.28 16 18 N -0.36 -9.94 3.40 -351.70 -1.19 -11.13 16 19 C 0.11 2.21 11.41 83.54 0.95 3.16 16 20 C -0.26 -6.09 6.53 22.01 0.14 -5.95 16 21 Br -0.01 -0.20 34.08 -20.37 -0.69 -0.89 16 22 C 0.06 1.78 12.01 85.25 1.02 2.81 16 23 N -0.31 -11.18 11.66 -56.98 -0.66 -11.84 16 24 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.01 0.70 6.85 -2.39 -0.02 0.68 16 26 H 0.05 2.22 6.95 -2.39 -0.02 2.21 16 27 H 0.13 1.58 6.44 -2.39 -0.02 1.56 16 28 H 0.09 2.05 7.63 -2.39 -0.02 2.03 16 29 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.10 2.64 8.03 -2.39 -0.02 2.62 16 31 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.18 1.86 7.33 -2.39 -0.02 1.84 16 35 H 0.13 2.70 8.04 -2.39 -0.02 2.68 16 36 H 0.23 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.20 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -87.05 340.17 3.97 -83.08 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.02 Total: 11.29 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.39 Total: -4.14 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -3.59 Total: -107.01 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.05 Total: -28.87 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.69 Total: -0.89 kcal Total: -87.05 3.97 -83.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264018882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.129 kcal (2) G-P(sol) polarization free energy of solvation -87.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds