Wall clock time and date at job start Sat Apr 11 2020 06:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00117 * 2 1 4 4 H 1.48501 * 109.47068 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46820 * 299.99667 * 3 2 1 6 6 H 1.48494 * 109.47093 * 59.99768 * 3 2 1 7 7 C 1.38948 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00261 * 160.27722 * 7 2 1 9 9 N 1.37102 * 120.00206 * 340.27965 * 7 2 1 10 10 C 1.34779 * 119.99488 * 317.65049 * 9 7 2 11 11 O 1.21290 * 120.00594 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99717 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46996 * 179.97438 * 12 10 9 14 14 C 1.35013 * 126.03262 * 124.99955 * 13 12 10 15 15 C 1.35359 * 107.73098 * 179.97438 * 14 13 12 16 16 Br 1.89106 * 126.04304 * 179.97438 * 15 14 13 17 17 C 1.39912 * 107.91084 * 0.02562 * 15 14 13 18 18 N 1.30841 * 108.20918 * 359.75347 * 17 15 14 19 19 C 1.46501 * 120.00208 * 137.64893 * 9 7 2 20 20 C 1.54968 * 110.92202 * 311.62660 * 19 9 7 21 21 C 1.54260 * 104.15651 * 156.29496 * 20 19 9 22 22 C 1.53874 * 106.64593 * 336.44753 * 21 20 19 23 23 C 1.54272 * 106.59490 * 359.97438 * 22 21 20 24 24 H 0.96997 * 119.99923 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46799 * 299.99926 * 12 10 9 26 26 H 1.09004 * 109.46980 * 60.00147 * 12 10 9 27 27 H 1.08002 * 126.13467 * 359.94182 * 14 13 12 28 28 H 1.08001 * 125.89671 * 179.97438 * 17 15 14 29 29 H 1.09005 * 110.67070 * 188.32184 * 19 9 7 30 30 H 1.08996 * 110.47645 * 37.64600 * 20 19 9 31 31 H 1.09001 * 110.52644 * 274.97579 * 20 19 9 32 32 H 1.08996 * 110.03228 * 217.13435 * 21 20 19 33 33 H 1.09010 * 110.03298 * 95.75497 * 21 20 19 34 34 H 1.08999 * 110.03671 * 119.25766 * 22 21 20 35 35 H 1.08999 * 110.03676 * 240.64499 * 22 21 20 36 36 H 1.08999 * 110.48823 * 142.29202 * 23 22 21 37 37 H 1.09003 * 110.48535 * 264.80247 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0413 -1.2309 -0.3151 9 7 1.3837 -2.3557 0.4017 10 6 0.5810 -2.3450 1.4844 11 8 0.4121 -1.3161 2.1040 12 6 -0.1067 -3.6116 1.9250 13 7 -0.9150 -3.3393 3.1162 14 6 -2.2338 -3.5922 3.2558 15 6 -2.5999 -3.1980 4.4979 16 35 -4.3369 -3.3164 5.2361 17 6 -1.4662 -2.6864 5.1386 18 7 -0.4550 -2.7753 4.3130 19 6 1.5881 -3.5986 -0.3465 20 6 1.4026 -3.3659 -1.8673 21 6 2.2101 -4.5043 -2.5244 22 6 3.2649 -4.9473 -1.4954 23 6 3.0626 -4.0622 -0.2481 24 1 -0.4850 0.8400 -0.0004 25 1 -0.7506 -3.9731 1.1233 26 1 0.6417 -4.3686 2.1595 27 1 -2.8808 -4.0300 2.5100 28 1 -1.4309 -2.2901 6.1426 29 1 0.9136 -4.3774 0.0096 30 1 1.8063 -2.3957 -2.1566 31 1 0.3496 -3.4386 -2.1395 32 1 2.6995 -4.1414 -3.4282 33 1 1.5510 -5.3382 -2.7661 34 1 3.1172 -5.9959 -1.2370 35 1 4.2662 -4.8002 -1.9000 36 1 3.2203 -4.6424 0.6611 37 1 3.7365 -3.2059 -0.2747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265580637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:16 Heat of formation + Delta-G solvation = 57.703882 kcal Electronic energy + Delta-G solvation = -22159.402733 eV Core-core repulsion = 18792.298987 eV Total energy + Delta-G solvation = -3367.103746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.91684 -38.85450 -36.83244 -33.63703 -32.89462 -31.60915 -31.25736 -29.00904 -28.18667 -27.06104 -26.92592 -24.39520 -21.28914 -20.63257 -20.15848 -19.80473 -19.33174 -16.74076 -16.70913 -16.18438 -15.13602 -15.08639 -14.40541 -14.21604 -14.03488 -13.63967 -13.33583 -13.08402 -12.90291 -12.78433 -12.35937 -11.97016 -11.66424 -11.22274 -10.95218 -10.86768 -10.80722 -10.73935 -10.65132 -10.58367 -10.55680 -10.20282 -10.02010 -9.92964 -9.85285 -9.31929 -8.78085 -8.28081 -7.98874 -7.15828 -6.17244 -3.90298 1.84953 2.12046 2.90869 2.96686 3.28398 3.38736 3.41183 4.02127 4.22043 4.65381 4.93908 4.98731 5.07882 5.12158 5.21770 5.34687 5.35561 5.54549 5.66316 5.73439 5.78203 5.90968 5.95913 6.01409 6.09463 6.12280 6.30368 6.32158 6.46037 6.69327 6.75854 6.78752 7.04184 7.13604 7.59011 7.93661 8.19537 8.96814 9.08467 9.58389 10.16758 10.91562 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.014068 B = 0.003592 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.917481 B = 7794.294702 C = 9112.772826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.340 4.340 8 H 0.080 0.920 9 N -0.443 5.443 10 C 0.461 3.539 11 O -0.502 6.502 12 C 0.111 3.889 13 N -0.331 5.331 14 C 0.093 3.907 15 C -0.246 4.246 16 Br -0.038 7.038 17 C 0.059 3.941 18 N -0.244 5.244 19 C 0.127 3.873 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.133 4.133 24 H 0.263 0.737 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.178 0.822 28 H 0.184 0.816 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.893 -11.909 3.018 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.166 5.166 10 C 0.245 3.755 11 O -0.377 6.377 12 C -0.014 4.014 13 N -0.110 5.110 14 C -0.058 4.058 15 C -0.338 4.338 16 Br 0.044 6.956 17 C -0.130 4.130 18 N -0.064 5.064 19 C 0.021 3.979 20 C -0.159 4.159 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.172 4.172 24 H 0.073 0.927 25 H 0.125 0.875 26 H 0.117 0.883 27 H 0.195 0.805 28 H 0.201 0.799 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.409 -11.085 3.302 12.378 hybrid contribution -0.279 0.639 -0.249 0.740 sum -4.688 -10.446 3.054 11.850 Atomic orbital electron populations 1.69853 1.06580 1.27300 1.42494 1.25161 0.94707 0.99352 0.94504 0.86239 0.79949 0.82971 0.77437 1.19552 1.21308 1.20731 1.18820 0.95074 0.84236 1.48544 0.90212 1.43179 1.44062 1.07330 1.21980 1.19613 0.84768 0.88466 0.82630 1.90626 1.61383 1.31872 1.53801 1.21868 0.95704 1.00263 0.83569 1.48183 1.06174 1.45051 1.11628 1.22297 0.86246 1.00061 0.97210 1.21570 0.93142 1.20897 0.98153 1.96505 1.16706 1.98253 1.84131 1.23762 0.89143 1.00011 1.00039 1.77638 1.22401 1.15370 0.91026 1.22079 0.94971 0.88061 0.92747 1.22540 0.99238 0.99485 0.94621 1.22105 0.97506 0.98365 0.98179 1.22058 0.98846 0.98830 0.96102 1.22683 0.98497 0.99412 0.96582 0.92696 0.87471 0.88336 0.80533 0.79876 0.91585 0.89305 0.92524 0.92357 0.92680 0.92573 0.92377 0.92586 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.87 11.67 55.50 0.65 -23.22 16 2 C 0.07 2.01 4.33 -17.47 -0.08 1.93 16 3 Si 0.91 21.73 29.60 -169.99 -5.03 16.70 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.34 -8.77 7.42 -14.93 -0.11 -8.88 16 8 H 0.08 2.01 7.02 -52.49 -0.37 1.64 16 9 N -0.44 -10.18 2.57 -105.57 -0.27 -10.45 16 10 C 0.46 11.05 7.01 -10.98 -0.08 10.98 16 11 O -0.50 -14.54 13.35 5.55 0.07 -14.47 16 12 C 0.11 2.00 5.32 -5.19 -0.03 1.98 16 13 N -0.33 -6.22 3.40 -62.51 -0.21 -6.44 16 14 C 0.09 1.49 11.41 -17.18 -0.20 1.29 16 15 C -0.25 -3.91 6.53 -39.98 -0.26 -4.17 16 16 Br -0.04 -0.50 34.08 -68.01 -2.32 -2.82 16 17 C 0.06 1.01 12.01 -17.35 -0.21 0.80 16 18 N -0.24 -5.00 11.65 30.63 0.36 -4.64 16 19 C 0.13 2.24 3.16 -65.90 -0.21 2.03 16 20 C -0.12 -2.04 6.32 -25.03 -0.16 -2.20 16 21 C -0.12 -1.63 6.80 -25.62 -0.17 -1.81 16 22 C -0.12 -1.54 6.80 -25.61 -0.17 -1.71 16 23 C -0.13 -2.08 6.42 -25.07 -0.16 -2.24 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.11 1.61 7.58 -51.93 -0.39 1.21 16 26 H 0.10 1.53 7.95 -51.93 -0.41 1.11 16 27 H 0.18 2.20 8.06 -52.49 -0.42 1.77 16 28 H 0.18 2.57 8.06 -52.49 -0.42 2.15 16 29 H 0.07 1.00 5.96 -51.93 -0.31 0.69 16 30 H 0.09 1.76 6.96 -51.93 -0.36 1.40 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.37 6.92 -51.93 -0.36 1.01 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -32.87 326.83 -8.38 -41.25 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.72 Total: 1.17 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.83 Total: -2.02 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.52 Total: -44.75 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.07 Total: -14.47 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.32 Total: -2.82 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.87 -8.38 -41.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265580637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.955 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds