Wall clock time and date at job start Sat Apr 11 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 S 1.65605 * 120.00032 * 265.00209 * 12 2 1 14 14 O 1.42101 * 106.40031 * 178.54209 * 13 12 2 15 15 O 1.42106 * 106.40103 * 311.45962 * 13 12 2 16 16 C 1.76197 * 107.21776 * 65.00008 * 13 12 2 17 17 C 1.39399 * 119.51746 * 89.99859 * 16 13 12 18 18 C 1.36068 * 120.96214 * 179.97438 * 17 16 13 19 19 C 1.40575 * 119.72205 * 359.97438 * 18 17 16 20 20 N 1.33783 * 121.09063 * 180.02562 * 19 18 17 21 21 C 1.31432 * 119.70185 * 179.97438 * 20 19 18 22 22 Cl 1.73601 * 119.66593 * 179.97438 * 21 20 19 23 23 C 1.39870 * 120.66746 * 359.97438 * 21 20 19 24 24 N 1.31287 * 120.68795 * 0.04497 * 23 21 20 25 25 C 1.33771 * 119.73618 * 359.95879 * 24 23 21 26 26 C 1.36065 * 119.51914 * 269.72621 * 16 13 12 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00169 * 85.00800 * 12 2 1 32 32 H 1.08004 * 119.51565 * 0.02562 * 17 16 13 33 33 H 1.08000 * 120.14238 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.65393 * 180.02562 * 23 21 20 35 35 H 1.08002 * 120.14242 * 0.02562 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 16 2.4121 0.1774 2.5505 14 8 2.8123 -0.7696 3.5316 15 8 3.2436 1.2445 2.1155 16 6 0.9274 0.9149 3.1474 17 6 0.1393 0.2249 4.0672 18 6 -1.0125 0.7669 4.5478 19 6 -1.4175 2.0411 4.1136 20 7 -2.5445 2.6001 4.5685 21 6 -2.8969 3.7932 4.1445 22 17 -4.3600 4.5174 4.7350 23 6 -2.1051 4.4853 3.2224 24 7 -0.9953 3.9562 2.7620 25 6 -0.6159 2.7430 3.1788 26 6 0.5696 2.1519 2.7079 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7088 1.1611 -3.4845 31 1 2.1110 -1.6560 1.1950 32 1 0.4480 -0.7538 4.4039 33 1 -1.6128 0.2208 5.2604 34 1 -2.4100 5.4650 2.8853 35 1 1.1922 2.6764 1.9981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269430669.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:19 Heat of formation + Delta-G solvation = -31.630585 kcal Electronic energy + Delta-G solvation = -24806.254150 eV Core-core repulsion = 20956.624033 eV Total energy + Delta-G solvation = -3849.630117 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.039 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.78222 -39.06700 -38.40348 -37.90366 -37.28353 -36.98556 -36.20217 -34.13805 -32.16494 -32.04628 -30.16104 -27.26173 -26.90777 -25.78013 -23.82943 -22.85258 -21.33615 -19.97263 -19.82865 -19.13027 -18.51528 -17.95587 -17.57466 -17.09517 -16.71819 -16.57473 -16.23661 -15.69452 -15.38414 -15.09352 -14.57041 -14.43036 -14.22259 -14.03996 -13.55913 -13.37312 -13.29975 -13.23886 -13.13601 -13.08527 -13.04399 -12.80175 -12.65805 -12.58895 -12.39236 -12.25508 -12.16245 -11.99032 -11.15600 -10.62080 -10.57062 -10.38560 -10.14344 -9.97580 -8.13967 -6.27885 -1.43038 -0.94427 -0.62599 0.28842 0.40761 1.18864 1.47614 1.48807 1.55840 2.07296 2.45389 2.47128 2.64564 2.71032 2.72281 2.89158 3.16425 3.32553 3.40342 3.73804 3.80034 3.94576 4.26027 4.46686 4.50178 4.63903 4.69574 4.80980 4.87690 4.94972 5.10164 5.26636 5.57868 5.70365 5.73825 6.02025 6.10100 6.20309 6.40547 6.82154 7.41707 8.91031 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.003572 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.897693 B = 7837.558955 C = 9213.935740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.272 3.728 3 H 0.025 0.975 4 C -0.542 4.542 5 H 0.069 0.931 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.268 1.268 12 N -1.094 6.094 13 S 2.706 3.294 14 O -0.973 6.973 15 O -0.988 6.988 16 C -0.648 4.648 17 C -0.018 4.018 18 C -0.090 4.090 19 C 0.118 3.882 20 N -0.437 5.437 21 C 0.165 3.835 22 Cl 0.022 6.978 23 C 0.102 3.898 24 N -0.414 5.414 25 C 0.037 3.963 26 C 0.034 3.966 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.422 0.578 32 H 0.180 0.820 33 H 0.181 0.819 34 H 0.227 0.773 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 4.291 14.332 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.167 3.833 3 H 0.043 0.957 4 C -0.582 4.582 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.192 1.192 12 N -0.855 5.855 13 S 2.795 3.205 14 O -0.963 6.963 15 O -0.978 6.978 16 C -0.736 4.736 17 C -0.038 4.038 18 C -0.110 4.110 19 C -0.005 4.005 20 N -0.154 5.154 21 C -0.018 4.018 22 Cl 0.050 6.950 23 C -0.076 4.076 24 N -0.127 5.127 25 C -0.087 4.087 26 C 0.013 3.987 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.258 0.742 32 H 0.198 0.802 33 H 0.198 0.802 34 H 0.243 0.757 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.853 4.566 14.615 17.686 hybrid contribution -0.612 -0.235 -1.011 1.205 sum -9.465 4.331 13.604 17.129 Atomic orbital electron populations 1.22121 0.97779 1.00334 1.00404 1.18341 0.91208 0.91887 0.81852 0.95734 1.21561 1.32174 1.13564 0.90877 0.91281 1.25662 0.95040 0.95659 1.01823 1.69974 1.36955 1.23665 1.24584 0.85572 0.78653 0.78817 0.78362 1.21110 1.19955 1.19246 1.55296 1.83699 1.19835 1.26715 1.01333 0.73713 0.73026 0.72382 1.93532 1.81330 1.61646 1.59767 1.93558 1.64554 1.57729 1.81947 1.30936 1.24978 1.06036 1.11679 1.20944 0.91695 1.00223 0.90976 1.21137 0.96926 0.92130 1.00825 1.19760 0.90091 0.96560 0.94109 1.68138 1.14024 1.09875 1.23369 1.23628 0.92083 0.91862 0.94274 1.98455 1.30437 1.79189 1.86905 1.24613 0.88737 1.02252 0.91995 1.68818 1.14259 1.09099 1.20550 1.19661 0.97436 0.93042 0.98530 1.20733 0.92431 0.92321 0.93241 0.95347 0.91383 0.93813 0.92563 0.74235 0.80241 0.80172 0.75692 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.42 9.29 71.98 0.67 -5.75 16 2 C 0.27 12.59 2.89 44.24 0.13 12.72 16 3 H 0.02 1.28 7.50 -2.38 -0.02 1.26 16 4 C -0.54 -27.65 8.76 25.60 0.22 -27.42 16 5 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -49.58 11.32 21.45 0.24 -49.34 16 8 Si 0.96 41.33 29.54 68.60 2.03 43.36 16 9 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 N -1.09 -40.85 5.46 -172.53 -0.94 -41.79 16 13 S 2.71 94.42 5.70 -56.49 -0.32 94.10 16 14 O -0.97 -33.58 17.23 -128.00 -2.21 -35.79 16 15 O -0.99 -41.71 16.54 -128.00 -2.12 -43.82 16 16 C -0.65 -19.81 5.04 22.04 0.11 -19.69 16 17 C -0.02 -0.43 9.42 22.04 0.21 -0.22 16 18 C -0.09 -2.06 9.98 22.34 0.22 -1.83 16 19 C 0.12 3.20 6.59 40.28 0.27 3.46 16 20 N -0.44 -10.85 10.44 -178.99 -1.87 -12.72 16 21 C 0.17 3.45 7.29 85.15 0.62 4.07 16 22 Cl 0.02 0.33 29.12 -2.72 -0.08 0.25 16 23 C 0.10 2.08 11.00 85.17 0.94 3.02 16 24 N -0.41 -11.70 10.46 -187.97 -1.97 -13.67 16 25 C 0.04 1.12 6.59 40.29 0.27 1.39 16 26 C 0.03 1.10 8.49 22.34 0.19 1.29 16 27 H 0.03 1.08 6.17 -2.39 -0.01 1.07 16 28 H 0.07 3.38 6.07 -2.39 -0.01 3.36 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.42 13.82 8.83 -96.75 -0.85 12.96 16 32 H 0.18 3.35 7.57 -2.91 -0.02 3.33 16 33 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.23 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.15 5.21 7.54 -2.91 -0.02 5.19 16 Total: -1.00 -66.44 331.83 -2.63 -69.07 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.32 Total: 17.92 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 4.29 Total: -27.57 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -4.54 Total: -117.52 kcal Atomic # 8 Polarization: -75.29 SS G_CDS: -4.32 Total: -79.61 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 94.42 SS G_CDS: -0.32 Total: 94.10 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.08 Total: 0.25 kcal Total: -66.44 -2.63 -69.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269430669.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.438 kcal (2) G-P(sol) polarization free energy of solvation -66.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds