Wall clock time and date at job start Sat Apr 11 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21637 * 120.00112 * 359.97438 * 14 13 3 16 16 C 1.47064 * 120.00029 * 179.97438 * 14 13 3 17 17 N 1.36706 * 126.89797 * 359.69016 * 16 14 13 18 18 H 0.97000 * 125.18858 * 359.97438 * 17 16 14 19 19 N 1.28441 * 109.62533 * 179.81381 * 17 16 14 20 20 C 1.30843 * 110.96589 * 0.45944 * 19 17 16 21 21 C 1.50698 * 126.06274 * 179.73504 * 20 19 17 22 22 C 1.52998 * 117.50253 * 8.60002 * 21 20 19 23 23 C 1.52992 * 117.50095 * 299.97471 * 21 20 19 24 24 C 1.38512 * 126.90029 * 179.97438 * 16 14 13 25 25 Br 1.89101 * 127.33252 * 359.97438 * 24 16 14 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 33 33 H 1.09008 * 115.54972 * 154.30491 * 21 20 19 34 34 H 1.09001 * 117.49350 * 359.97438 * 22 21 20 35 35 H 1.08996 * 117.50168 * 145.01822 * 22 21 20 36 36 H 1.09002 * 117.50279 * 214.98167 * 23 21 20 37 37 H 1.09002 * 117.49986 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3419 2.6318 -0.4316 16 6 0.0462 3.3225 -2.6233 17 7 0.8046 3.4462 -3.7539 18 1 1.7072 3.1075 -3.8615 19 7 0.1386 4.0766 -4.6533 20 6 -1.0462 4.4111 -4.2100 21 6 -2.1011 5.1637 -4.9792 22 6 -1.8521 5.4045 -6.4694 23 6 -1.7461 6.5655 -5.4787 24 6 -1.1600 3.9460 -2.8968 25 35 -2.6448 4.1286 -1.7401 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 5.8770 0.4826 2.1132 32 1 2.2718 2.1232 -1.9978 33 1 -3.1292 4.9877 -4.6624 34 1 -0.9249 5.0189 -6.8934 35 1 -2.7162 5.3867 -7.1334 36 1 -2.5406 7.3117 -5.4910 37 1 -0.7496 6.9437 -5.2506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273807041.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:44 Heat of formation + Delta-G solvation = 66.615677 kcal Electronic energy + Delta-G solvation = -21623.176721 eV Core-core repulsion = 18256.459419 eV Total energy + Delta-G solvation = -3366.717302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.74571 -39.21130 -37.30680 -35.52858 -32.78288 -32.38226 -31.93511 -30.74042 -29.44395 -27.60243 -24.48043 -23.50661 -22.57793 -22.41459 -20.72929 -20.23021 -19.52131 -19.00278 -16.79704 -16.09636 -15.98773 -15.71695 -15.44620 -14.87573 -14.55042 -14.10204 -13.66942 -13.48372 -13.09766 -12.49992 -12.28634 -12.04803 -11.88897 -11.71600 -11.57117 -11.37330 -11.18214 -11.00795 -10.93087 -10.71820 -10.54784 -10.12042 -10.01837 -9.63794 -9.38220 -9.31370 -9.17113 -8.87257 -8.77108 -8.27837 -6.30485 -4.34570 1.11789 1.65163 2.12860 2.75258 3.17407 3.30260 3.34002 3.45146 3.48402 3.76409 4.23376 4.29186 4.46484 4.71018 4.80685 4.88112 5.03171 5.21566 5.37095 5.47464 5.60997 5.87548 5.90870 5.94615 5.97573 5.98321 6.08457 6.53903 6.60276 6.70706 6.72179 6.86207 7.04861 7.16002 7.35677 7.70957 7.94826 8.30633 8.54293 8.68207 9.28914 10.81257 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.003758 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.633085 B = 7449.058801 C = 8372.978203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.245 3.755 4 H 0.055 0.945 5 C -0.540 4.540 6 H 0.080 0.920 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.258 1.258 13 N -0.693 5.693 14 C 0.568 3.432 15 O -0.504 6.504 16 C 0.017 3.983 17 N -0.369 5.369 18 H 0.452 0.548 19 N -0.266 5.266 20 C 0.089 3.911 21 C -0.081 4.081 22 C -0.164 4.164 23 C -0.162 4.162 24 C -0.142 4.142 25 Br 0.014 6.986 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.269 0.731 32 H 0.389 0.611 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 7.396 -12.782 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.073 0.927 5 C -0.578 4.578 6 H 0.098 0.902 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.183 1.183 13 N -0.341 5.341 14 C 0.350 3.650 15 O -0.378 6.378 16 C -0.116 4.116 17 N -0.085 5.085 18 H 0.298 0.702 19 N -0.099 5.099 20 C -0.071 4.071 21 C -0.101 4.101 22 C -0.201 4.201 23 C -0.200 4.200 24 C -0.233 4.233 25 Br 0.098 6.902 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.426 7.419 -12.426 21.152 hybrid contribution 0.420 -0.869 0.766 1.232 sum -15.006 6.550 -11.660 20.101 Atomic orbital electron populations 1.21892 0.96721 0.99336 1.02349 1.22300 0.94509 0.99652 1.01326 1.19251 0.95894 0.88601 0.82039 0.92748 1.20984 0.88336 1.40380 1.08116 0.90224 1.24816 0.94892 0.94991 0.97640 1.69855 1.08718 1.44112 1.29845 0.86909 0.81008 0.79999 0.80911 1.20137 1.22037 1.18292 1.46124 1.13917 1.55701 1.18395 1.16886 0.83457 0.79649 0.84969 1.90887 1.50903 1.58461 1.37514 1.22003 0.92867 1.05744 0.90948 1.43550 1.15585 1.41249 1.08083 0.70164 1.73052 1.06243 1.13144 1.17459 1.20871 0.92975 1.01803 0.91458 1.20229 0.96114 0.98037 0.95671 1.22980 1.03914 1.02199 0.91002 1.23008 1.03352 0.90602 1.03018 1.22111 0.95550 1.09319 0.96317 1.96650 1.34575 1.96906 1.62053 0.92599 0.94764 0.93022 0.92494 0.92255 0.92132 0.77840 0.85567 0.87903 0.88296 0.88083 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.51 37.16 0.32 -2.49 16 2 C -0.14 -2.93 5.11 -26.73 -0.14 -3.07 16 3 C 0.24 5.45 1.83 -69.08 -0.13 5.33 16 4 H 0.05 1.34 6.63 -51.93 -0.34 1.00 16 5 C -0.54 -13.87 9.31 -34.44 -0.32 -14.19 16 6 H 0.08 2.14 7.98 -52.49 -0.42 1.72 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 9 Si 0.88 21.00 24.41 -169.99 -4.15 16.85 16 10 H -0.27 -6.34 6.83 56.52 0.39 -5.96 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.26 -6.07 6.53 56.52 0.37 -5.70 16 13 N -0.69 -12.66 5.02 -56.12 -0.28 -12.94 16 14 C 0.57 10.24 6.37 -12.68 -0.08 10.16 16 15 O -0.50 -10.35 12.68 5.24 0.07 -10.28 16 16 C 0.02 0.27 7.16 -82.01 -0.59 -0.32 16 17 N -0.37 -4.64 6.85 33.49 0.23 -4.41 16 18 H 0.45 4.35 8.22 -190.46 -1.57 2.79 16 19 N -0.27 -3.48 11.73 33.65 0.39 -3.08 16 20 C 0.09 1.17 6.75 -82.44 -0.56 0.61 16 21 C -0.08 -0.83 6.15 -91.78 -0.56 -1.39 16 22 C -0.16 -1.39 10.14 -26.73 -0.27 -1.66 16 23 C -0.16 -1.39 10.23 -26.74 -0.27 -1.67 16 24 C -0.14 -2.11 6.73 -38.90 -0.26 -2.38 16 25 Br 0.01 0.20 32.52 -68.01 -2.21 -2.01 16 26 H 0.05 1.13 7.84 -51.93 -0.41 0.73 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.98 5.64 -51.93 -0.29 0.69 16 29 H 0.06 1.27 3.22 -51.93 -0.17 1.10 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.39 6.02 7.72 -40.82 -0.32 5.71 16 33 H 0.13 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.10 0.95 7.90 -51.93 -0.41 0.54 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -30.22 323.70 -8.90 -39.12 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.64 Total: 5.61 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -2.96 Total: -8.97 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 1.12 Total: -45.19 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.15 Total: 16.85 kcal Atomic # 35 Polarization: 0.20 SS G_CDS: -2.21 Total: -2.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.22 -8.90 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273807041.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.733 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds