Wall clock time and date at job start Sat Apr 11 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47108 * 2 1 4 4 C 1.46496 * 119.99869 * 274.99666 * 3 2 1 5 5 C 1.50700 * 109.47553 * 275.00184 * 4 3 2 6 6 H 1.07997 * 119.99967 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00188 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00303 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47047 * 60.00301 * 9 7 5 11 11 H 1.48505 * 109.47114 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47264 * 299.99942 * 9 7 5 13 13 S 1.65599 * 119.99915 * 94.99983 * 3 2 1 14 14 O 1.42101 * 106.40178 * 336.45768 * 13 3 2 15 15 O 1.42100 * 106.39810 * 203.53870 * 13 3 2 16 16 C 1.76203 * 107.22004 * 89.99999 * 13 3 2 17 17 C 1.38391 * 119.99827 * 270.00126 * 16 13 3 18 18 F 1.35094 * 120.00056 * 0.02562 * 17 16 13 19 19 C 1.38642 * 119.99745 * 179.97438 * 17 16 13 20 20 F 1.35095 * 119.99884 * 180.27133 * 19 17 16 21 21 C 1.38395 * 119.99959 * 0.02562 * 19 17 16 22 22 C 1.38386 * 119.99935 * 0.02562 * 21 19 17 23 23 F 1.35104 * 119.99673 * 179.97438 * 22 21 19 24 24 C 1.38395 * 119.99893 * 89.99597 * 16 13 3 25 25 F 1.35099 * 120.00114 * 0.04647 * 24 16 13 26 26 H 1.09005 * 109.47091 * 60.00244 * 1 2 3 27 27 H 1.08996 * 109.46785 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47422 * 300.00058 * 1 2 3 29 29 H 1.09001 * 109.47271 * 239.99931 * 2 1 3 30 30 H 1.09001 * 109.47199 * 120.00244 * 2 1 3 31 31 H 1.09000 * 109.47432 * 35.00128 * 4 3 2 32 32 H 1.09004 * 109.47516 * 154.99892 * 4 3 2 33 33 H 0.96997 * 120.00000 * 180.02562 * 8 7 5 34 34 H 1.08000 * 119.99408 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3836 7 6 3.8530 2.3613 -3.0843 8 7 3.0285 3.1870 -3.6911 9 14 5.5100 1.9653 -3.8505 10 1 5.6003 0.5055 -4.1075 11 1 5.6523 2.7036 -5.1312 12 1 6.5947 2.3726 -2.9219 13 16 2.4122 2.1202 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3057 3.5186 1.1997 16 6 4.1170 1.7941 1.7320 17 6 4.4897 0.6700 2.4481 18 9 3.5465 -0.1775 2.9141 19 6 5.8311 0.4132 2.6863 20 9 6.1953 -0.6870 3.3806 21 6 6.7974 1.2811 2.2085 22 6 6.4245 2.4057 1.4934 23 9 7.3678 3.2533 1.0274 24 6 5.0832 2.6620 1.2541 25 9 4.7193 3.7598 0.5558 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.3618 1.8097 -1.9453 32 1 2.0922 3.1803 -1.0757 33 1 3.2803 3.5895 -4.5369 34 1 7.8423 1.0812 2.3945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279303189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:03 Heat of formation + Delta-G solvation = -211.295663 kcal Electronic energy + Delta-G solvation = -29500.150904 eV Core-core repulsion = 24640.244058 eV Total energy + Delta-G solvation = -4859.906846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.85803 -49.62847 -48.91330 -48.67468 -38.70916 -36.88183 -36.21630 -35.48537 -32.80229 -31.50875 -30.05927 -30.02629 -26.75179 -24.60599 -23.31114 -23.18332 -21.84772 -19.48537 -18.73995 -18.43178 -17.98257 -17.35073 -16.70947 -16.65183 -16.62224 -16.13820 -16.02492 -15.85425 -15.38014 -15.29047 -15.03005 -14.93153 -14.55105 -14.44541 -13.98669 -13.48646 -13.43458 -13.04958 -12.75442 -12.37582 -12.18172 -12.10635 -11.86097 -11.80538 -11.68925 -11.49369 -11.12964 -11.05239 -11.00910 -10.58793 -10.48582 -10.17744 -9.92719 -9.79870 -8.79567 -8.56587 -8.25433 -6.19051 -4.26753 -0.03977 0.33034 0.69548 2.46425 3.14415 3.20558 3.25212 3.26962 3.32285 3.37793 3.61321 3.94777 4.00186 4.17627 4.29753 4.64269 4.75413 4.95031 5.07560 5.16507 5.22105 5.31138 5.59752 5.69059 5.73993 6.01001 6.22639 6.23913 6.54610 6.61293 7.19800 7.28864 7.48930 7.75286 8.03253 8.75692 9.40156 10.88986 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.007506 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.115333 B = 3729.497383 C = 5200.017458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.969 5.969 4 C 0.241 3.759 5 C -0.548 4.548 6 H 0.057 0.943 7 C 0.072 3.928 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.275 1.275 13 S 2.683 3.317 14 O -0.951 6.951 15 O -0.931 6.931 16 C -0.709 4.709 17 C 0.186 3.814 18 F -0.091 7.091 19 C 0.059 3.941 20 F -0.115 7.115 21 C -0.088 4.088 22 C 0.064 3.936 23 F -0.110 7.110 24 C 0.216 3.784 25 F -0.070 7.070 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.267 0.733 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 -5.541 10.832 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.810 5.810 4 C 0.120 3.880 5 C -0.587 4.587 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.200 1.200 13 S 2.765 3.235 14 O -0.941 6.941 15 O -0.921 6.921 16 C -0.789 4.789 17 C 0.164 3.836 18 F -0.069 7.069 19 C 0.038 3.962 20 F -0.093 7.093 21 C -0.107 4.107 22 C 0.043 3.957 23 F -0.089 7.089 24 C 0.193 3.807 25 F -0.048 7.048 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.918 -4.937 11.185 12.838 hybrid contribution 1.874 -0.553 -0.801 2.111 sum 5.792 -5.490 10.384 13.096 Atomic orbital electron populations 1.22189 0.96197 1.01759 1.02651 1.21162 0.94255 0.82145 1.02731 1.57498 1.76368 1.23693 1.23429 1.19370 0.97696 0.92559 0.78390 1.21413 1.02246 1.28529 1.06557 0.92458 1.24877 0.97063 0.94578 0.96743 1.69900 1.35918 1.29233 1.17068 0.86735 0.84297 0.78645 0.78959 1.20033 1.20850 1.20016 1.02756 0.72722 0.74462 0.73584 1.93589 1.67732 1.75698 1.57055 1.93628 1.84644 1.28747 1.85121 1.31530 1.30385 1.03254 1.13733 1.16569 0.85015 0.87694 0.94309 1.91705 1.62429 1.67526 1.85231 1.17058 0.90630 0.87815 1.00692 1.91582 1.91894 1.49509 1.76325 1.21005 1.01632 0.91823 0.96275 1.17206 0.84626 0.91861 1.02041 1.91608 1.62387 1.68423 1.86448 1.16650 0.90163 0.84199 0.89657 1.91827 1.91641 1.47616 1.73673 0.91836 0.91986 0.92383 0.89659 0.91453 0.93359 0.92541 0.92338 0.80851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 37.16 0.38 -2.12 16 2 C 0.12 2.04 6.06 -4.04 -0.02 2.02 16 3 N -0.97 -19.23 2.77 -115.66 -0.32 -19.55 16 4 C 0.24 5.70 5.43 -5.20 -0.03 5.68 16 5 C -0.55 -13.86 9.38 -34.44 -0.32 -14.19 16 6 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 7 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 8 N -0.88 -24.54 13.29 55.43 0.74 -23.81 16 9 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 S 2.68 52.45 5.54 -107.50 -0.60 51.85 16 14 O -0.95 -18.37 15.17 -57.17 -0.87 -19.24 16 15 O -0.93 -20.62 14.75 -57.17 -0.84 -21.46 16 16 C -0.71 -12.40 5.98 -39.47 -0.24 -12.63 16 17 C 0.19 2.86 7.21 -39.38 -0.28 2.58 16 18 F -0.09 -1.43 15.11 2.25 0.03 -1.39 16 19 C 0.06 0.77 7.30 -39.37 -0.29 0.48 16 20 F -0.11 -1.40 17.18 2.25 0.04 -1.36 16 21 C -0.09 -1.02 10.00 -39.47 -0.39 -1.41 16 22 C 0.06 0.94 7.30 -39.38 -0.29 0.65 16 23 F -0.11 -1.65 17.18 2.25 0.04 -1.61 16 24 C 0.22 3.83 7.21 -39.38 -0.28 3.55 16 25 F -0.07 -1.45 15.25 2.25 0.03 -1.42 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 30 H 0.07 1.01 7.46 -51.93 -0.39 0.62 16 31 H 0.05 1.17 8.11 -51.93 -0.42 0.75 16 32 H 0.06 1.47 6.92 -51.93 -0.36 1.11 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 327.87 15.07 4.94 4.94 Total: -1.00 -29.11 327.87 -6.51 -35.63 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -2.82 Total: -4.32 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.87 Total: -13.60 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.42 Total: -43.36 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.71 Total: -40.70 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.15 Total: -5.79 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 52.45 SS G_CDS: -0.60 Total: 51.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.11 -6.51 -35.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279303189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.666 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds