Wall clock time and date at job start Sat Apr 11 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47108 * 2 1 4 4 C 1.46496 * 119.99869 * 274.99666 * 3 2 1 5 5 C 1.50700 * 109.47553 * 275.00184 * 4 3 2 6 6 H 1.07997 * 119.99967 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00188 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00303 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47047 * 60.00301 * 9 7 5 11 11 H 1.48505 * 109.47114 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47264 * 299.99942 * 9 7 5 13 13 S 1.65599 * 119.99915 * 94.99983 * 3 2 1 14 14 O 1.42101 * 106.40178 * 336.45768 * 13 3 2 15 15 O 1.42100 * 106.39810 * 203.53870 * 13 3 2 16 16 C 1.76203 * 107.22004 * 89.99999 * 13 3 2 17 17 C 1.38391 * 119.99827 * 270.00126 * 16 13 3 18 18 F 1.35094 * 120.00056 * 0.02562 * 17 16 13 19 19 C 1.38642 * 119.99745 * 179.97438 * 17 16 13 20 20 F 1.35095 * 119.99884 * 180.27133 * 19 17 16 21 21 C 1.38395 * 119.99959 * 0.02562 * 19 17 16 22 22 C 1.38386 * 119.99935 * 0.02562 * 21 19 17 23 23 F 1.35104 * 119.99673 * 179.97438 * 22 21 19 24 24 C 1.38395 * 119.99893 * 89.99597 * 16 13 3 25 25 F 1.35099 * 120.00114 * 0.04647 * 24 16 13 26 26 H 1.09005 * 109.47091 * 60.00244 * 1 2 3 27 27 H 1.08996 * 109.46785 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47422 * 300.00058 * 1 2 3 29 29 H 1.09001 * 109.47271 * 239.99931 * 2 1 3 30 30 H 1.09001 * 109.47199 * 120.00244 * 2 1 3 31 31 H 1.09000 * 109.47432 * 35.00128 * 4 3 2 32 32 H 1.09004 * 109.47516 * 154.99892 * 4 3 2 33 33 H 0.96997 * 120.00000 * 180.02562 * 8 7 5 34 34 H 1.08000 * 119.99408 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3836 7 6 3.8530 2.3613 -3.0843 8 7 3.0285 3.1870 -3.6911 9 14 5.5100 1.9653 -3.8505 10 1 5.6003 0.5055 -4.1075 11 1 5.6523 2.7036 -5.1312 12 1 6.5947 2.3726 -2.9219 13 16 2.4122 2.1202 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3057 3.5186 1.1997 16 6 4.1170 1.7941 1.7320 17 6 4.4897 0.6700 2.4481 18 9 3.5465 -0.1775 2.9141 19 6 5.8311 0.4132 2.6863 20 9 6.1953 -0.6870 3.3806 21 6 6.7974 1.2811 2.2085 22 6 6.4245 2.4057 1.4934 23 9 7.3678 3.2533 1.0274 24 6 5.0832 2.6620 1.2541 25 9 4.7193 3.7598 0.5558 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.3618 1.8097 -1.9453 32 1 2.0922 3.1803 -1.0757 33 1 3.2803 3.5895 -4.5369 34 1 7.8423 1.0812 2.3945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279303189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:02 Heat of formation + Delta-G solvation = -229.092391 kcal Electronic energy + Delta-G solvation = -29500.922628 eV Core-core repulsion = 24640.244058 eV Total energy + Delta-G solvation = -4860.678570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.00805 -50.90708 -50.02326 -49.97561 -39.89558 -38.47844 -37.80759 -37.09936 -34.72532 -32.69822 -31.57739 -31.21771 -28.56798 -25.81733 -24.96469 -24.45747 -23.36896 -20.81458 -19.95363 -19.72053 -19.37598 -18.87223 -18.43497 -18.01060 -17.86273 -17.62155 -17.30804 -17.23144 -16.81018 -16.45545 -16.31044 -16.21120 -16.08030 -15.66542 -15.54990 -14.86031 -14.71767 -14.70223 -13.99606 -13.87681 -13.69071 -13.57624 -13.40496 -13.32487 -13.12929 -13.08954 -12.80930 -12.69678 -12.42430 -12.27517 -12.16941 -11.81972 -11.64464 -10.99078 -10.58239 -10.00104 -9.92067 -8.19351 -6.32839 -1.24430 -0.86256 -0.81303 1.29231 1.39792 1.40984 1.47816 1.79749 1.98456 2.17549 2.39158 2.40541 2.51061 2.74738 3.04641 3.13510 3.33588 3.61042 3.68409 3.84279 3.89644 4.25584 4.38268 4.42176 4.45611 4.69390 4.98463 5.07780 5.13071 5.24795 5.41184 5.45486 5.70287 5.84170 6.05319 6.76674 7.37241 8.88854 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.007506 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.115333 B = 3729.497383 C = 5200.017458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.975 5.975 4 C 0.257 3.743 5 C -0.547 4.547 6 H 0.065 0.935 7 C 0.020 3.980 8 N -0.922 5.922 9 Si 0.943 3.057 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.270 1.270 13 S 2.691 3.309 14 O -0.953 6.953 15 O -0.968 6.968 16 C -0.720 4.720 17 C 0.181 3.819 18 F -0.094 7.094 19 C 0.080 3.920 20 F -0.102 7.102 21 C -0.050 4.050 22 C 0.067 3.933 23 F -0.111 7.111 24 C 0.183 3.817 25 F -0.100 7.100 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.024 0.976 33 H 0.267 0.733 34 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -7.877 11.927 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.815 5.815 4 C 0.134 3.866 5 C -0.586 4.586 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.561 5.561 9 Si 0.768 3.232 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.195 1.195 13 S 2.776 3.224 14 O -0.943 6.943 15 O -0.958 6.958 16 C -0.805 4.805 17 C 0.159 3.841 18 F -0.072 7.072 19 C 0.058 3.942 20 F -0.080 7.080 21 C -0.069 4.069 22 C 0.046 3.954 23 F -0.089 7.089 24 C 0.161 3.839 25 F -0.077 7.077 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.337 -7.299 12.293 15.639 hybrid contribution 1.151 0.097 -1.006 1.532 sum 7.488 -7.202 11.288 15.341 Atomic orbital electron populations 1.22190 0.94940 1.03668 1.01820 1.21456 0.95449 0.80487 1.03743 1.57391 1.77290 1.24817 1.22037 1.18894 0.96916 0.91173 0.79613 1.21699 1.02688 1.27887 1.06301 0.91639 1.25675 1.00329 0.94578 0.97482 1.70026 1.37831 1.30654 1.17562 0.85824 0.80334 0.79041 0.78003 1.18591 1.20934 1.19483 1.02130 0.73358 0.73576 0.73292 1.93576 1.68586 1.75430 1.56703 1.93582 1.85716 1.31011 1.85511 1.31003 1.28778 1.04834 1.15861 1.16680 0.86112 0.87077 0.94260 1.91696 1.62885 1.67409 1.85213 1.16963 0.89584 0.87927 0.99712 1.91632 1.91596 1.48909 1.75894 1.21439 1.03663 0.89053 0.92765 1.17267 0.83267 0.92646 1.02264 1.91613 1.62018 1.68709 1.86558 1.17035 0.91817 0.84081 0.91012 1.91749 1.92101 1.49140 1.74743 0.92871 0.88693 0.93012 0.89364 0.89595 0.94633 0.95757 0.92439 0.75752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 10.24 71.98 0.74 -4.10 16 2 C 0.11 3.69 6.06 86.38 0.52 4.21 16 3 N -0.98 -39.45 2.77 -519.84 -1.44 -40.89 16 4 C 0.26 12.63 5.43 85.63 0.47 13.10 16 5 C -0.55 -27.97 9.38 25.60 0.24 -27.73 16 6 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.02 1.06 5.46 84.65 0.46 1.52 16 8 N -0.92 -52.56 13.29 21.45 0.28 -52.27 16 9 Si 0.94 41.38 29.54 68.60 2.03 43.41 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 S 2.69 107.51 5.54 -56.49 -0.31 107.20 16 14 O -0.95 -36.86 15.17 -128.00 -1.94 -38.80 16 15 O -0.97 -45.19 14.75 -128.00 -1.89 -47.08 16 16 C -0.72 -24.83 5.98 22.34 0.13 -24.69 16 17 C 0.18 5.16 7.21 22.40 0.16 5.32 16 18 F -0.09 -2.76 15.11 44.97 0.68 -2.08 16 19 C 0.08 1.74 7.30 22.40 0.16 1.90 16 20 F -0.10 -2.01 17.18 44.97 0.77 -1.23 16 21 C -0.05 -0.92 10.00 22.34 0.22 -0.70 16 22 C 0.07 1.80 7.30 22.40 0.16 1.96 16 23 F -0.11 -3.04 17.18 44.97 0.77 -2.27 16 24 C 0.18 6.43 7.21 22.40 0.16 6.59 16 25 F -0.10 -4.28 15.25 44.97 0.69 -3.59 16 26 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 2.81 8.11 -2.39 -0.02 2.79 16 30 H 0.09 2.46 7.46 -2.39 -0.02 2.44 16 31 H 0.04 1.81 8.11 -2.39 -0.02 1.79 16 32 H 0.02 1.35 6.92 -2.38 -0.02 1.33 16 33 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.23 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -64.87 327.87 4.25 -60.62 By element: Atomic # 1 Polarization: -1.56 SS G_CDS: 1.17 Total: -0.39 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 3.44 Total: -22.62 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -1.15 Total: -93.16 kcal Atomic # 8 Polarization: -82.05 SS G_CDS: -3.83 Total: -85.88 kcal Atomic # 9 Polarization: -12.09 SS G_CDS: 2.91 Total: -9.18 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 107.51 SS G_CDS: -0.31 Total: 107.20 kcal Total: -64.87 4.25 -60.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279303189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.474 kcal (2) G-P(sol) polarization free energy of solvation -64.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds