Wall clock time and date at job start Sat Apr 11 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47272 * 113.69299 * 3 2 1 5 5 C 1.37093 * 119.99921 * 263.92360 * 4 3 2 6 6 H 1.07995 * 120.00008 * 199.75434 * 5 4 3 7 7 C 1.38959 * 119.99848 * 19.75751 * 5 4 3 8 8 N 1.31412 * 120.00148 * 21.74514 * 7 5 4 9 9 Si 1.86799 * 119.99632 * 201.74725 * 7 5 4 10 10 H 1.48498 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47101 * 119.99770 * 9 7 5 12 12 H 1.48496 * 109.47016 * 239.99828 * 9 7 5 13 13 C 1.34779 * 119.99961 * 83.91828 * 4 3 2 14 14 O 1.21297 * 119.99942 * 179.97438 * 13 4 3 15 15 C 1.50692 * 120.00109 * 0.02562 * 13 4 3 16 16 C 1.53007 * 109.47159 * 179.97438 * 15 13 4 17 17 H 1.08996 * 109.47052 * 305.00100 * 16 15 13 18 18 O 1.42894 * 109.46674 * 65.00133 * 16 15 13 19 19 C 1.50702 * 109.47165 * 184.99835 * 16 15 13 20 20 C 1.38223 * 119.98742 * 279.73057 * 19 16 15 21 21 C 1.38361 * 120.00952 * 179.72973 * 20 19 16 22 22 Cl 1.73601 * 120.00211 * 180.27058 * 21 20 19 23 23 C 1.38322 * 119.98635 * 0.56280 * 21 20 19 24 24 C 1.38331 * 119.97672 * 359.70726 * 23 21 20 25 25 Cl 1.73598 * 120.00604 * 180.02562 * 24 23 21 26 26 C 1.38217 * 119.98533 * 100.00070 * 19 16 15 27 27 H 4.40645 * 5.51398 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.47420 * 353.68807 * 3 2 1 29 29 H 1.09010 * 109.46921 * 233.68770 * 3 2 1 30 30 H 0.96993 * 119.99691 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.47721 * 59.99674 * 15 13 4 32 32 H 1.08997 * 109.47379 * 299.99515 * 15 13 4 33 33 H 0.96703 * 114.00517 * 59.99954 * 18 16 15 34 34 H 1.08004 * 119.99275 * 359.97438 * 20 19 16 35 35 H 1.08013 * 120.01119 * 179.72983 * 23 21 20 36 36 H 1.08001 * 119.99594 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5559 -1.2648 5 6 3.4815 -0.2822 -2.2926 6 1 4.1245 0.0722 -3.0845 7 6 3.0061 -1.5877 -2.3154 8 7 1.9252 -1.9053 -1.6389 9 14 3.9035 -2.8912 -3.3078 10 1 5.0824 -2.2817 -3.9741 11 1 4.3534 -3.9795 -2.4032 12 1 2.9879 -3.4485 -4.3355 13 6 3.2416 1.8906 -1.4179 14 8 3.6462 2.3503 -2.4650 15 6 2.8602 2.8118 -0.2880 16 6 3.0753 4.2641 -0.7191 17 1 4.1031 4.3940 -1.0578 18 8 2.1786 4.5821 -1.7853 19 6 2.8117 5.1792 0.4489 20 6 1.5133 5.5131 0.7856 21 6 1.2705 6.3487 1.8612 22 17 -0.3605 6.7624 2.2883 23 6 2.3278 6.8593 2.5925 24 6 3.6272 6.5292 2.2517 25 17 4.9547 7.1690 3.1693 26 6 3.8685 5.6886 1.1795 27 1 -1.0501 0.0001 0.0002 28 1 3.0098 -1.0206 0.1130 29 1 3.0090 0.6095 0.8282 30 1 1.5936 -2.8167 -1.6546 31 1 3.4803 2.5959 0.5821 32 1 1.8113 2.6597 -0.0334 33 1 1.2442 4.4884 -1.5546 34 1 0.6881 5.1185 0.2113 35 1 2.1389 7.5151 3.4297 36 1 4.8830 5.4312 0.9130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281878763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:09 Heat of formation + Delta-G solvation = -6.376557 kcal Electronic energy + Delta-G solvation = -24293.728326 eV Core-core repulsion = 20410.856848 eV Total energy + Delta-G solvation = -3882.871478 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.037 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16698 -38.73627 -37.12341 -37.01801 -36.15182 -35.03755 -32.34071 -31.95662 -31.23324 -30.89169 -29.61609 -26.48857 -25.32830 -23.81718 -23.08837 -21.40321 -19.17905 -18.04915 -17.87809 -16.69667 -16.41369 -16.30601 -15.88705 -15.69891 -15.00962 -14.59805 -14.47645 -14.37577 -14.03949 -13.71677 -13.58759 -12.62367 -12.59354 -12.58787 -12.44447 -12.25598 -12.03275 -11.65547 -11.62985 -11.34341 -11.28920 -11.22532 -11.04131 -10.81329 -10.49572 -10.34526 -9.99839 -9.40479 -9.27238 -9.13111 -9.01480 -8.94134 -8.39426 -7.85666 -6.34150 -3.87727 0.70162 0.74851 1.52781 1.98676 3.11129 3.12734 3.25305 3.31726 3.64332 3.88638 3.99865 4.12814 4.25296 4.56313 4.63532 4.71803 4.81691 4.91658 5.01791 5.07258 5.24221 5.25074 5.41562 5.47904 5.69940 5.75340 5.81180 5.91549 5.97008 6.20995 6.28319 6.34828 6.67127 6.97612 7.55841 7.82368 8.04512 8.41269 8.76461 9.13350 9.34290 9.90183 10.66707 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.002966 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.437199 B = 9438.603293 C =10274.660570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.114 4.114 3 C 0.232 3.768 4 N -0.442 5.442 5 C -0.315 4.315 6 H 0.104 0.896 7 C 0.032 3.968 8 N -0.861 5.861 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.454 3.546 14 O -0.566 6.566 15 C -0.163 4.163 16 C 0.170 3.830 17 H 0.119 0.881 18 O -0.531 6.531 19 C -0.081 4.081 20 C -0.098 4.098 21 C -0.019 4.019 22 Cl -0.059 7.059 23 C -0.109 4.109 24 C -0.021 4.021 25 Cl -0.060 7.060 26 C -0.095 4.095 27 H 0.199 0.801 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.267 0.733 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.365 0.635 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 14.029 12.358 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.116 4.116 3 C 0.109 3.891 4 N -0.162 5.162 5 C -0.442 4.442 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.499 5.499 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.242 3.758 14 O -0.448 6.448 15 C -0.204 4.204 16 C 0.110 3.890 17 H 0.136 0.864 18 O -0.335 6.335 19 C -0.083 4.083 20 C -0.116 4.116 21 C -0.046 4.046 22 Cl -0.030 7.030 23 C -0.128 4.128 24 C -0.048 4.048 25 Cl -0.031 7.031 26 C -0.114 4.114 27 H 0.216 0.784 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.212 0.788 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.302 14.274 11.648 18.426 hybrid contribution -0.701 -0.966 0.201 1.210 sum -1.003 13.308 11.849 17.847 Atomic orbital electron populations 1.24268 0.95359 1.05003 1.03218 1.23172 0.94352 0.96575 0.97471 1.18205 0.84312 1.00736 0.85857 1.43693 1.56409 1.03968 1.12092 1.19669 1.28254 0.91647 1.04671 0.87869 1.25286 0.95003 0.98936 0.98017 1.70088 1.17993 1.19738 1.42092 0.85999 0.79814 0.80398 0.79324 1.19198 1.20661 1.20926 1.19795 0.84574 0.82667 0.88722 1.90579 1.50111 1.75056 1.29094 1.22361 1.03506 0.94811 0.99707 1.20556 0.96139 0.89364 0.82989 0.86377 1.86787 1.18718 1.90576 1.37401 1.20779 0.92205 0.97610 0.97663 1.20942 0.97530 0.97258 0.95908 1.20664 0.86084 1.00290 0.97596 1.98391 1.19328 1.92526 1.92736 1.20853 0.89662 1.01373 1.00903 1.20698 0.88659 0.99659 0.95779 1.98388 1.46172 1.85452 1.73050 1.21054 1.00538 0.96038 0.93796 0.78435 0.87634 0.92092 0.92262 0.89405 0.89586 0.78799 0.84247 0.83948 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 19.25 29.55 0.57 -4.57 16 2 C -0.11 -2.43 10.75 -37.12 -0.40 -2.83 16 3 C 0.23 4.88 4.91 -6.83 -0.03 4.84 16 4 N -0.44 -10.66 2.60 -117.93 -0.31 -10.97 16 5 C -0.32 -8.45 9.28 -14.93 -0.14 -8.59 16 6 H 0.10 2.94 7.42 -52.49 -0.39 2.55 16 7 C 0.03 0.82 4.83 -17.46 -0.08 0.73 16 8 N -0.86 -22.20 9.59 55.50 0.53 -21.67 16 9 Si 0.92 20.15 29.61 -169.99 -5.03 15.12 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.45 10.33 7.44 -10.99 -0.08 10.25 16 14 O -0.57 -14.98 15.09 -8.87 -0.13 -15.11 16 15 C -0.16 -2.67 3.97 -27.88 -0.11 -2.78 16 16 C 0.17 2.51 2.75 -27.88 -0.08 2.43 16 17 H 0.12 1.86 7.82 -51.93 -0.41 1.46 16 18 O -0.53 -8.74 12.42 -49.64 -0.62 -9.36 16 19 C -0.08 -0.96 4.97 -104.63 -0.52 -1.48 16 20 C -0.10 -1.06 9.11 -39.54 -0.36 -1.42 16 21 C -0.02 -0.20 6.32 -39.51 -0.25 -0.45 16 22 Cl -0.06 -0.57 28.96 -51.86 -1.50 -2.07 16 23 C -0.11 -1.05 9.61 -39.52 -0.38 -1.43 16 24 C -0.02 -0.21 6.32 -39.50 -0.25 -0.46 16 25 Cl -0.06 -0.56 28.96 -51.86 -1.50 -2.06 16 26 C -0.10 -1.03 9.45 -39.55 -0.37 -1.41 16 27 H 0.20 3.19 7.80 -54.09 -0.42 2.77 16 28 H 0.11 2.36 6.60 -51.93 -0.34 2.02 16 29 H 0.06 1.04 6.70 -51.92 -0.35 0.69 16 30 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 31 H 0.09 1.25 7.42 -51.93 -0.39 0.86 16 32 H 0.09 1.36 7.49 -51.93 -0.39 0.97 16 33 H 0.37 4.71 7.50 45.56 0.34 5.05 16 34 H 0.14 1.36 6.77 -52.48 -0.36 1.00 16 35 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.14 1.39 8.04 -52.49 -0.42 0.96 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -31.25 347.42 -8.49 -39.74 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -2.68 Total: 8.31 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.49 Total: -7.18 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.23 Total: -32.63 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.75 Total: -24.47 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -3.00 Total: -4.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.25 -8.49 -39.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281878763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.360 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds