Wall clock time and date at job start Sat Apr 11 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28440 * 125.18686 * 2 1 4 4 C 1.30842 * 110.96722 * 180.26091 * 3 2 1 5 5 C 1.39779 * 107.87416 * 359.75272 * 4 3 2 6 6 Br 1.89097 * 127.33311 * 180.02562 * 5 4 3 7 7 C 1.36708 * 125.18693 * 179.83656 * 2 1 3 8 8 C 1.47059 * 126.90062 * 0.02562 * 7 2 1 9 9 O 1.21636 * 120.00410 * 100.01549 * 8 7 2 10 10 N 1.34783 * 119.99683 * 280.01142 * 8 7 2 11 11 C 1.46497 * 119.99597 * 174.97028 * 10 8 7 12 12 C 1.50702 * 109.47079 * 90.00757 * 11 10 8 13 13 H 1.07998 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00148 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99937 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00211 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46858 * 89.99840 * 16 14 12 18 18 H 1.48501 * 109.47230 * 210.00246 * 16 14 12 19 19 H 1.48509 * 109.47073 * 330.00112 * 16 14 12 20 20 C 1.46500 * 119.99949 * 354.97299 * 10 8 7 21 21 C 1.52992 * 109.47120 * 274.22410 * 20 10 8 22 22 C 1.52998 * 117.50087 * 244.02824 * 21 20 10 23 23 C 1.53003 * 117.49790 * 175.36919 * 21 20 10 24 24 H 1.09002 * 109.47138 * 265.09693 * 1 2 3 25 25 H 1.09005 * 109.47023 * 25.09896 * 1 2 3 26 26 H 1.09007 * 109.46818 * 145.09704 * 1 2 3 27 27 H 1.07998 * 126.06362 * 179.78902 * 4 3 2 28 28 H 1.08993 * 109.47805 * 330.00290 * 11 10 8 29 29 H 1.09008 * 109.46877 * 210.00127 * 11 10 8 30 30 H 0.96994 * 119.99607 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.47160 * 34.23132 * 20 10 8 32 32 H 1.09005 * 109.46645 * 154.22641 * 20 10 8 33 33 H 1.08996 * 115.55141 * 29.70456 * 21 20 10 34 34 H 1.08999 * 117.49836 * 0.02562 * 22 21 20 35 35 H 1.09006 * 117.50067 * 145.02378 * 22 21 20 36 36 H 1.08998 * 117.49858 * 214.97967 * 23 21 20 37 37 H 1.09000 * 117.50159 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4734 0.7283 -0.0056 5 6 3.5626 -0.6666 -0.0038 6 35 5.1361 -1.7152 -0.0090 7 6 2.2528 -1.1173 0.0032 8 6 1.8005 -2.5166 0.0067 9 8 1.7881 -3.1544 -1.0290 10 7 1.3997 -3.0924 1.1575 11 6 0.8458 -4.4485 1.1439 12 6 1.9592 -5.4477 1.3260 13 1 2.9775 -5.1066 1.4400 14 6 1.6777 -6.7973 1.3470 15 7 0.4375 -7.2126 1.2087 16 14 3.0578 -8.0358 1.5720 17 1 3.2493 -8.3060 3.0197 18 1 2.7076 -9.2993 0.8746 19 1 4.3138 -7.4867 1.0006 20 6 1.5180 -2.3620 2.4220 21 6 2.9201 -2.5655 2.9992 22 6 3.0339 -3.3015 4.3358 23 6 3.2803 -1.7922 4.2694 24 1 -0.3633 -0.0878 1.0239 25 1 -0.3633 0.9307 -0.4359 26 1 -0.3633 -0.8429 -0.5881 27 1 4.3042 1.4184 -0.0101 28 1 0.3485 -4.6284 0.1909 29 1 0.1257 -4.5551 1.9553 30 1 0.2395 -8.1620 1.2238 31 1 1.3483 -1.2999 2.2453 32 1 0.7765 -2.7358 3.1281 33 1 3.7112 -2.7268 2.2670 34 1 2.1098 -3.6411 4.8036 35 1 3.9000 -3.9468 4.4829 36 1 4.3083 -1.4452 4.3728 37 1 2.5181 -1.1387 4.6939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295361952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:19 Heat of formation + Delta-G solvation = 80.047120 kcal Electronic energy + Delta-G solvation = -22551.149217 eV Core-core repulsion = 19185.014347 eV Total energy + Delta-G solvation = -3366.134871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.53469 -39.03673 -37.06357 -34.51971 -33.67185 -32.64268 -31.65103 -29.74690 -27.88774 -27.01973 -26.20389 -23.75351 -22.02172 -21.59455 -21.41479 -20.52853 -18.92403 -17.41919 -16.62241 -16.38893 -15.73070 -15.41537 -14.88658 -14.55041 -14.36388 -13.96867 -13.76516 -13.24365 -13.08746 -12.74346 -12.60902 -12.39666 -12.21491 -11.55638 -11.31254 -11.20148 -11.11972 -11.01706 -10.86855 -10.67333 -10.30858 -10.00612 -9.86177 -9.66530 -9.59282 -9.42014 -9.14344 -8.58904 -8.44118 -7.88564 -6.06351 -4.08864 1.60222 1.67844 2.44137 2.50906 3.08410 3.30313 3.37357 3.42934 3.66734 4.16988 4.43979 4.47732 4.63578 4.96031 5.01282 5.07681 5.20041 5.26912 5.29693 5.34028 5.39208 5.48488 5.68474 5.77812 5.85595 5.99338 6.20383 6.26856 6.42995 6.58835 6.65187 6.90340 7.25049 7.37698 7.90480 7.93754 8.12237 8.18331 8.66397 8.95998 9.55557 11.02446 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.005612 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.495488 B = 4987.734124 C = 5419.780801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.273 5.273 3 N -0.285 5.285 4 C 0.037 3.963 5 C -0.176 4.176 6 Br -0.001 7.001 7 C 0.036 3.964 8 C 0.573 3.427 9 O -0.507 6.507 10 N -0.576 5.576 11 C 0.248 3.752 12 C -0.516 4.516 13 H 0.062 0.938 14 C 0.062 3.938 15 N -0.898 5.898 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.146 3.854 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.186 4.186 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.191 0.809 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.263 0.737 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 16.137 2.685 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.060 5.060 3 N -0.115 5.115 4 C -0.143 4.143 5 C -0.266 4.266 6 Br 0.083 6.917 7 C -0.097 4.097 8 C 0.355 3.645 9 O -0.381 6.381 10 N -0.307 5.307 11 C 0.130 3.870 12 C -0.555 4.555 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.537 5.537 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.022 3.978 21 C -0.178 4.178 22 C -0.199 4.199 23 C -0.224 4.224 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.208 0.792 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.243 16.121 2.110 16.579 hybrid contribution 1.022 -1.200 0.229 1.593 sum 4.266 14.922 2.339 15.695 Atomic orbital electron populations 1.22269 0.72592 1.05841 1.04786 1.45611 1.07577 1.01763 1.51065 1.73165 1.03430 1.13447 1.21443 1.23422 0.93775 0.92619 1.04523 1.22245 0.91476 0.94863 1.18032 1.96666 1.28126 1.69022 1.97898 1.21924 0.90613 0.90360 1.06759 1.16884 0.79261 0.83260 0.85094 1.90863 1.52149 1.63024 1.32014 1.48245 1.59787 1.18244 1.04450 1.19431 0.94250 0.74674 0.98676 1.21365 0.94096 0.90632 1.49371 0.91999 1.24884 0.95594 0.98273 0.95197 1.69919 1.18011 1.15345 1.50429 0.86548 0.82506 0.80699 0.78059 1.20649 1.21174 1.19798 1.21026 0.95558 0.94887 0.86333 1.22767 0.98949 1.04490 0.91563 1.22897 1.03276 0.93378 1.00351 1.22933 1.01893 0.95093 1.02463 0.89320 0.87923 0.88525 0.79248 0.93772 0.94548 0.92775 0.92326 0.89897 0.87134 0.88752 0.89117 0.89221 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.10 59.85 0.66 1.55 16 2 N -0.27 -3.92 3.51 -63.85 -0.22 -4.14 16 3 N -0.29 -4.01 11.90 30.61 0.36 -3.65 16 4 C 0.04 0.50 12.03 -17.40 -0.21 0.29 16 5 C -0.18 -2.82 6.76 -38.90 -0.26 -3.08 16 6 Br 0.00 -0.01 33.17 -68.01 -2.26 -2.27 16 7 C 0.04 0.62 4.95 -82.01 -0.41 0.22 16 8 C 0.57 11.88 6.87 -12.68 -0.09 11.79 16 9 O -0.51 -12.68 16.74 5.25 0.09 -12.59 16 10 N -0.58 -11.67 2.46 -176.47 -0.43 -12.11 16 11 C 0.25 6.10 5.16 -5.19 -0.03 6.07 16 12 C -0.52 -14.02 9.39 -34.44 -0.32 -14.34 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 16 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.15 2.39 5.55 -4.05 -0.02 2.37 16 21 C -0.16 -2.58 5.98 -90.62 -0.54 -3.12 16 22 C -0.16 -2.46 10.18 -26.69 -0.27 -2.73 16 23 C -0.19 -2.44 10.25 -26.69 -0.27 -2.71 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.10 1.05 7.93 -51.92 -0.41 0.64 16 27 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 29 H 0.04 0.90 7.86 -51.92 -0.41 0.49 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.06 0.85 6.77 -51.93 -0.35 0.50 16 32 H 0.08 1.29 7.58 -51.93 -0.39 0.89 16 33 H 0.11 2.03 7.31 -51.93 -0.38 1.65 16 34 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -32.23 343.47 -8.26 -40.50 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.83 Total: -0.38 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.86 Total: -2.08 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.44 Total: -45.02 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.26 Total: -2.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.23 -8.26 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295361952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.543 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds