Wall clock time and date at job start Sat Apr 11 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28440 * 125.18686 * 2 1 4 4 C 1.30842 * 110.96722 * 180.26091 * 3 2 1 5 5 C 1.39779 * 107.87416 * 359.75272 * 4 3 2 6 6 Br 1.89097 * 127.33311 * 180.02562 * 5 4 3 7 7 C 1.36708 * 125.18693 * 179.83656 * 2 1 3 8 8 C 1.47059 * 126.90062 * 0.02562 * 7 2 1 9 9 O 1.21636 * 120.00410 * 100.01549 * 8 7 2 10 10 N 1.34783 * 119.99683 * 280.01142 * 8 7 2 11 11 C 1.46497 * 119.99597 * 174.97028 * 10 8 7 12 12 C 1.50702 * 109.47079 * 90.00757 * 11 10 8 13 13 H 1.07998 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00148 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99937 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00211 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46858 * 89.99840 * 16 14 12 18 18 H 1.48501 * 109.47230 * 210.00246 * 16 14 12 19 19 H 1.48509 * 109.47073 * 330.00112 * 16 14 12 20 20 C 1.46500 * 119.99949 * 354.97299 * 10 8 7 21 21 C 1.52992 * 109.47120 * 274.22410 * 20 10 8 22 22 C 1.52998 * 117.50087 * 244.02824 * 21 20 10 23 23 C 1.53003 * 117.49790 * 175.36919 * 21 20 10 24 24 H 1.09002 * 109.47138 * 265.09693 * 1 2 3 25 25 H 1.09005 * 109.47023 * 25.09896 * 1 2 3 26 26 H 1.09007 * 109.46818 * 145.09704 * 1 2 3 27 27 H 1.07998 * 126.06362 * 179.78902 * 4 3 2 28 28 H 1.08993 * 109.47805 * 330.00290 * 11 10 8 29 29 H 1.09008 * 109.46877 * 210.00127 * 11 10 8 30 30 H 0.96994 * 119.99607 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.47160 * 34.23132 * 20 10 8 32 32 H 1.09005 * 109.46645 * 154.22641 * 20 10 8 33 33 H 1.08996 * 115.55141 * 29.70456 * 21 20 10 34 34 H 1.08999 * 117.49836 * 0.02562 * 22 21 20 35 35 H 1.09006 * 117.50067 * 145.02378 * 22 21 20 36 36 H 1.08998 * 117.49858 * 214.97967 * 23 21 20 37 37 H 1.09000 * 117.50159 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4734 0.7283 -0.0056 5 6 3.5626 -0.6666 -0.0038 6 35 5.1361 -1.7152 -0.0090 7 6 2.2528 -1.1173 0.0032 8 6 1.8005 -2.5166 0.0067 9 8 1.7881 -3.1544 -1.0290 10 7 1.3997 -3.0924 1.1575 11 6 0.8458 -4.4485 1.1439 12 6 1.9592 -5.4477 1.3260 13 1 2.9775 -5.1066 1.4400 14 6 1.6777 -6.7973 1.3470 15 7 0.4375 -7.2126 1.2087 16 14 3.0578 -8.0358 1.5720 17 1 3.2493 -8.3060 3.0197 18 1 2.7076 -9.2993 0.8746 19 1 4.3138 -7.4867 1.0006 20 6 1.5180 -2.3620 2.4220 21 6 2.9201 -2.5655 2.9992 22 6 3.0339 -3.3015 4.3358 23 6 3.2803 -1.7922 4.2694 24 1 -0.3633 -0.0878 1.0239 25 1 -0.3633 0.9307 -0.4359 26 1 -0.3633 -0.8429 -0.5881 27 1 4.3042 1.4184 -0.0101 28 1 0.3485 -4.6284 0.1909 29 1 0.1257 -4.5551 1.9553 30 1 0.2395 -8.1620 1.2238 31 1 1.3483 -1.2999 2.2453 32 1 0.7765 -2.7358 3.1281 33 1 3.7112 -2.7268 2.2670 34 1 2.1098 -3.6411 4.8036 35 1 3.9000 -3.9468 4.4829 36 1 4.3083 -1.4452 4.3728 37 1 2.5181 -1.1387 4.6939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295361952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:18 Heat of formation + Delta-G solvation = 60.931505 kcal Electronic energy + Delta-G solvation = -22551.978133 eV Core-core repulsion = 19185.014347 eV Total energy + Delta-G solvation = -3366.963786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.69787 -40.64356 -38.40622 -36.19298 -34.77713 -34.60016 -32.92099 -31.08478 -29.64952 -28.02373 -27.70277 -25.58457 -23.16576 -23.08474 -22.59894 -21.79198 -20.24788 -18.83541 -18.59025 -17.84537 -17.04667 -16.85510 -16.38157 -16.11783 -15.91904 -15.16817 -14.95684 -14.66532 -14.27860 -14.20678 -14.01926 -13.70903 -13.52132 -13.34945 -13.04972 -12.76721 -12.56804 -12.34595 -12.28814 -12.23480 -12.14771 -11.64894 -11.29751 -11.18555 -11.04755 -10.76750 -10.58971 -10.29798 -9.80065 -9.62727 -8.19903 -6.29339 0.33752 0.48498 1.14711 1.36349 1.38970 1.40594 1.48318 1.66330 2.19445 2.41209 2.98815 3.11296 3.25993 3.47379 3.84228 4.00388 4.03301 4.19387 4.20208 4.27780 4.37187 4.38540 4.49121 4.54664 4.70694 4.85201 4.97419 5.10686 5.11450 5.18993 5.33508 5.34641 5.52775 5.56684 5.78883 6.08317 6.46355 6.75948 6.81229 7.06363 7.39523 8.88059 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.005612 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.495488 B = 4987.734124 C = 5419.780801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.265 5.265 3 N -0.276 5.276 4 C 0.045 3.955 5 C -0.181 4.181 6 Br -0.008 7.008 7 C 0.012 3.988 8 C 0.579 3.421 9 O -0.563 6.563 10 N -0.575 5.575 11 C 0.264 3.736 12 C -0.523 4.523 13 H 0.051 0.949 14 C 0.015 3.985 15 N -0.927 5.927 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.278 1.278 20 C 0.147 3.853 21 C -0.183 4.183 22 C -0.175 4.175 23 C -0.149 4.149 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.084 0.916 27 H 0.225 0.775 28 H 0.006 0.994 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 18.254 4.131 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.052 5.052 3 N -0.107 5.107 4 C -0.134 4.134 5 C -0.272 4.272 6 Br 0.076 6.924 7 C -0.121 4.121 8 C 0.363 3.637 9 O -0.441 6.441 10 N -0.304 5.304 11 C 0.144 3.856 12 C -0.561 4.561 13 H 0.070 0.930 14 C -0.184 4.184 15 N -0.567 5.567 16 Si 0.777 3.223 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.203 1.203 20 C 0.025 3.975 21 C -0.203 4.203 22 C -0.212 4.212 23 C -0.186 4.186 24 H 0.129 0.871 25 H 0.150 0.850 26 H 0.103 0.897 27 H 0.242 0.758 28 H 0.025 0.975 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.890 18.278 3.600 19.030 hybrid contribution 0.792 -1.793 -0.228 1.973 sum 4.682 16.485 3.371 17.465 Atomic orbital electron populations 1.22637 0.70586 1.06980 1.06338 1.45931 1.08670 1.00734 1.49902 1.73208 1.03665 1.12828 1.20970 1.23949 0.94487 0.91823 1.03168 1.22439 0.90810 0.95981 1.17979 1.96656 1.28222 1.69627 1.97887 1.21342 0.91713 0.89220 1.09854 1.17218 0.77872 0.84522 0.84089 1.90820 1.54510 1.64907 1.33867 1.48139 1.59147 1.16927 1.06192 1.18925 0.93489 0.76813 0.96384 1.21547 0.94126 0.91490 1.48972 0.93037 1.25626 0.97683 1.00048 0.95027 1.70013 1.19596 1.15810 1.51277 0.85650 0.79485 0.78425 0.78742 1.18977 1.20798 1.20268 1.21227 0.96169 0.95601 0.84533 1.22672 0.98080 1.07435 0.92096 1.22942 1.03196 0.95247 0.99788 1.23006 1.03277 0.93725 0.98583 0.87142 0.84989 0.89691 0.75818 0.97549 0.94689 0.92569 0.89999 0.89111 0.89344 0.88667 0.89791 0.87938 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 11.10 127.77 1.42 2.79 16 2 N -0.26 -7.05 3.51 -355.93 -1.25 -8.30 16 3 N -0.28 -6.92 11.90 -57.08 -0.68 -7.60 16 4 C 0.04 1.08 12.03 85.21 1.03 2.10 16 5 C -0.18 -5.56 6.76 22.71 0.15 -5.41 16 6 Br -0.01 -0.24 33.17 -20.37 -0.68 -0.91 16 7 C 0.01 0.40 4.95 40.77 0.20 0.60 16 8 C 0.58 24.49 6.87 86.56 0.59 25.08 16 9 O -0.56 -29.48 16.74 -4.15 -0.07 -29.55 16 10 N -0.57 -23.66 2.46 -830.46 -2.05 -25.70 16 11 C 0.26 13.46 5.16 85.63 0.44 13.90 16 12 C -0.52 -29.13 9.39 25.60 0.24 -28.89 16 13 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 14 C 0.02 0.85 5.46 84.65 0.46 1.31 16 15 N -0.93 -54.37 13.29 21.45 0.28 -54.08 16 16 Si 0.95 44.87 29.54 68.60 2.03 46.89 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 20 C 0.15 4.65 5.55 86.38 0.48 5.13 16 21 C -0.18 -5.75 5.98 -10.80 -0.06 -5.81 16 22 C -0.17 -5.06 10.18 30.62 0.31 -4.75 16 23 C -0.15 -3.44 10.25 30.62 0.31 -3.12 16 24 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.08 1.81 7.93 -2.38 -0.02 1.80 16 27 H 0.23 3.62 8.06 -2.91 -0.02 3.60 16 28 H 0.01 0.37 7.50 -2.39 -0.02 0.36 16 29 H 0.04 1.78 7.86 -2.38 -0.02 1.76 16 30 H 0.27 14.74 8.31 -92.71 -0.77 13.96 16 31 H 0.08 2.19 6.77 -2.39 -0.02 2.18 16 32 H 0.09 2.70 7.58 -2.38 -0.02 2.68 16 33 H 0.09 3.21 7.31 -2.39 -0.02 3.20 16 34 H 0.09 2.71 8.03 -2.39 -0.02 2.69 16 35 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -71.45 343.47 4.25 -67.20 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.08 Total: 9.13 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.58 Total: 2.93 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -3.69 Total: -95.69 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.07 Total: -29.55 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -0.68 Total: -0.91 kcal Total: -71.45 4.25 -67.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295361952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.129 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds