Wall clock time and date at job start Sat Apr 11 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46904 * 296.50864 * 3 2 1 5 5 C 1.36938 * 120.00192 * 275.30971 * 4 3 2 6 6 H 1.07998 * 120.00130 * 144.74249 * 5 4 3 7 7 C 1.38818 * 119.99749 * 324.74670 * 5 4 3 8 8 N 1.31623 * 119.99732 * 155.36018 * 7 5 4 9 9 Si 1.86796 * 120.00181 * 335.36287 * 7 5 4 10 10 H 1.48506 * 109.47247 * 91.17184 * 9 7 5 11 11 H 1.48501 * 109.47207 * 211.17033 * 9 7 5 12 12 H 1.48498 * 109.47073 * 331.17538 * 9 7 5 13 13 S 1.65600 * 120.00019 * 95.31382 * 4 3 2 14 14 O 1.42103 * 106.40150 * 344.34954 * 13 4 3 15 15 O 1.42098 * 106.40314 * 211.42757 * 13 4 3 16 16 C 1.76210 * 107.21877 * 97.88694 * 13 4 3 17 17 C 1.37974 * 119.90906 * 111.52840 * 16 13 4 18 18 C 1.39605 * 119.89908 * 180.02562 * 17 16 13 19 19 C 1.47732 * 120.13951 * 179.97438 * 18 17 16 20 20 O 1.21470 * 119.99748 * 359.97438 * 19 18 17 21 21 O 1.34712 * 119.99924 * 179.97438 * 19 18 17 22 22 C 1.39622 * 119.72444 * 0.02562 * 18 17 16 23 23 C 1.38153 * 119.81936 * 359.97438 * 22 18 17 24 24 F 1.35109 * 119.95150 * 180.02562 * 23 22 18 25 25 C 1.38308 * 119.90813 * 291.25837 * 16 13 4 26 26 C 1.50692 * 119.86239 * 359.97438 * 25 16 13 27 27 H 4.40637 * 5.51438 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.47212 * 176.50910 * 3 2 1 29 29 H 1.08995 * 109.47167 * 56.50704 * 3 2 1 30 30 H 0.96993 * 119.99901 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.04931 * 359.97438 * 17 16 13 32 32 H 0.96698 * 116.99260 * 180.02562 * 21 19 18 33 33 H 1.07995 * 120.09063 * 180.02562 * 22 18 17 34 34 H 1.09005 * 109.47011 * 84.79746 * 26 25 16 35 35 H 1.09004 * 109.47512 * 204.79803 * 26 25 16 36 36 H 1.09000 * 109.47632 * 324.80018 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.6156 1.2360 5 6 3.2590 0.1366 2.3735 6 1 3.0553 -0.3048 3.3378 7 6 3.6468 1.4667 2.2870 8 7 3.3167 2.3118 3.2406 9 14 4.6371 2.0572 0.8173 10 1 3.7133 2.5420 -0.2396 11 1 5.5337 3.1641 1.2369 12 1 5.4514 0.9348 0.2860 13 16 3.5364 -2.2220 1.2576 14 8 2.9671 -2.7938 0.0880 15 8 3.2516 -2.6893 2.5690 16 6 5.2846 -2.3250 1.0615 17 6 6.0703 -2.7564 2.1104 18 6 7.4553 -2.8374 1.9550 19 6 8.3017 -3.2980 3.0747 20 8 7.7928 -3.6068 4.1336 21 8 9.6378 -3.3756 2.9214 22 6 8.0373 -2.4802 0.7372 23 6 7.2396 -2.0497 -0.3055 24 9 7.8000 -1.7039 -1.4852 25 6 5.8647 -1.9785 -0.1452 26 6 4.9991 -1.5146 -1.2882 27 1 -1.0499 0.0001 0.0002 28 1 3.0089 1.0265 -0.0626 29 1 3.0096 -0.5662 -0.8570 30 1 3.5880 3.2411 3.1803 31 1 5.6146 -3.0302 3.0506 32 1 10.1498 -3.6829 3.6821 33 1 9.1081 -2.5410 0.6103 34 1 4.8073 -0.4462 -1.1883 35 1 5.5102 -1.7053 -2.2319 36 1 4.0535 -2.0565 -1.2711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313408520.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:22 Heat of formation + Delta-G solvation = -98.762505 kcal Electronic energy + Delta-G solvation = -28308.970221 eV Core-core repulsion = 23995.799919 eV Total energy + Delta-G solvation = -4313.170302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.90915 -40.41758 -38.63355 -36.81472 -36.26142 -36.13651 -34.76157 -33.07339 -32.88049 -31.67174 -30.69944 -28.01742 -26.84247 -24.32535 -23.58710 -23.29988 -21.14007 -18.99375 -18.66883 -18.25456 -17.92547 -17.11766 -16.77133 -16.30727 -16.03569 -16.01550 -15.79844 -15.50565 -15.41278 -15.27102 -14.42182 -13.96533 -13.62886 -13.42168 -13.35957 -13.15611 -13.08180 -12.90473 -12.42338 -12.13417 -11.95202 -11.71119 -11.57574 -11.37777 -11.24482 -10.96820 -10.90226 -10.84438 -10.66563 -10.47035 -10.09484 -9.87327 -9.64773 -9.27724 -9.17791 -8.69968 -8.57702 -6.96623 -4.36517 0.46091 0.95328 1.29625 2.34304 2.75527 2.86800 2.93572 2.95411 3.23911 3.42794 3.47640 3.72952 4.02082 4.15963 4.43959 4.58926 4.63419 4.78984 4.96191 4.98391 5.01508 5.35402 5.43962 5.53697 5.58931 5.66012 5.74298 5.86089 5.93668 6.11262 6.17718 6.29205 6.35323 6.41933 6.64229 6.75818 7.12943 7.78873 7.95808 8.18469 8.54232 8.60624 10.08691 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.005295 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.005084 B = 5286.558519 C = 5363.813945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.206 3.794 4 N -0.815 5.815 5 C -0.242 4.242 6 H 0.131 0.869 7 C 0.069 3.931 8 N -0.803 5.803 9 Si 0.862 3.138 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.248 1.248 13 S 2.523 3.477 14 O -0.992 6.992 15 O -0.962 6.962 16 C -0.643 4.643 17 C 0.035 3.965 18 C -0.136 4.136 19 C 0.532 3.468 20 O -0.503 6.503 21 O -0.514 6.514 22 C -0.062 4.062 23 C 0.057 3.943 24 F -0.135 7.135 25 C 0.020 3.980 26 C -0.190 4.190 27 H 0.215 0.785 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.287 0.713 31 H 0.160 0.840 32 H 0.414 0.586 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 -3.040 -6.780 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C 0.081 3.919 4 N -0.638 5.638 5 C -0.393 4.393 6 H 0.148 0.852 7 C -0.150 4.150 8 N -0.438 5.438 9 Si 0.688 3.312 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.172 1.172 13 S 2.626 3.374 14 O -0.981 6.981 15 O -0.951 6.951 16 C -0.719 4.719 17 C 0.015 3.985 18 C -0.138 4.138 19 C 0.376 3.624 20 O -0.392 6.392 21 O -0.326 6.326 22 C -0.081 4.081 23 C 0.037 3.963 24 F -0.114 7.114 25 C 0.018 3.982 26 C -0.246 4.246 27 H 0.232 0.768 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.178 0.822 32 H 0.273 0.727 33 H 0.168 0.832 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.970 -3.859 -6.838 10.499 hybrid contribution 1.874 0.581 -0.323 1.988 sum 8.844 -3.278 -7.161 11.842 Atomic orbital electron populations 1.24706 0.95650 1.01701 1.00577 1.23267 0.94450 0.99573 0.99825 1.18684 0.85038 1.00287 0.87872 1.54066 1.65440 1.30094 1.14163 1.19515 1.39958 0.92528 0.87283 0.85166 1.25817 0.95141 0.96414 0.97604 1.69826 1.36492 1.04802 1.32632 0.87247 0.81187 0.80329 0.82455 1.18520 1.20258 1.17183 1.12283 0.74461 0.77259 0.73446 1.93268 1.76886 1.78762 1.49181 1.93401 1.83082 1.80547 1.38117 1.32286 1.32682 1.09523 0.97380 1.21153 0.90842 0.88030 0.98439 1.18890 0.93186 1.09017 0.92699 1.20678 0.80587 0.74180 0.87001 1.90928 1.74452 1.45643 1.28132 1.84544 1.19932 1.80652 1.47484 1.21423 1.00804 0.94799 0.91103 1.17421 0.91130 1.05128 0.82634 1.91483 1.85289 1.90194 1.44390 1.19759 0.92205 0.91513 0.94756 1.22052 1.02963 1.03481 0.96076 0.76834 0.89586 0.87767 0.90252 0.82202 0.72725 0.83168 0.89134 0.89680 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.59 19.25 29.55 0.57 -3.02 16 2 C -0.17 -3.33 13.63 -37.12 -0.51 -3.84 16 3 C 0.21 4.03 3.91 -6.83 -0.03 4.01 16 4 N -0.82 -17.88 2.47 -62.78 -0.16 -18.04 16 5 C -0.24 -5.80 9.58 -15.06 -0.14 -5.95 16 6 H 0.13 3.40 7.63 -52.49 -0.40 3.00 16 7 C 0.07 1.60 5.30 -17.43 -0.09 1.51 16 8 N -0.80 -19.66 13.97 55.49 0.78 -18.88 16 9 Si 0.86 17.18 25.09 -169.99 -4.27 12.91 16 10 H -0.26 -4.79 6.45 56.52 0.36 -4.42 16 11 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 12 H -0.25 -4.69 6.11 56.52 0.35 -4.34 16 13 S 2.52 55.31 5.07 -107.50 -0.54 54.76 16 14 O -0.99 -21.79 14.06 -57.17 -0.80 -22.60 16 15 O -0.96 -23.71 16.04 -57.17 -0.92 -24.63 16 16 C -0.64 -12.60 5.91 -39.65 -0.23 -12.83 16 17 C 0.03 0.65 9.09 -39.17 -0.36 0.29 16 18 C -0.14 -2.22 5.87 -104.99 -0.62 -2.84 16 19 C 0.53 7.90 8.27 34.61 0.29 8.19 16 20 O -0.50 -8.88 17.13 -19.24 -0.33 -9.21 16 21 O -0.51 -5.40 12.68 -40.53 -0.51 -5.92 16 22 C -0.06 -0.91 9.60 -39.10 -0.38 -1.29 16 23 C 0.06 0.91 7.23 -39.48 -0.29 0.62 16 24 F -0.13 -2.02 16.38 2.25 0.04 -1.99 16 25 C 0.02 0.35 5.88 -104.46 -0.61 -0.26 16 26 C -0.19 -3.02 7.86 36.00 0.28 -2.74 16 27 H 0.21 2.71 7.80 -54.09 -0.42 2.29 16 28 H 0.09 1.65 2.81 -51.93 -0.15 1.50 16 29 H 0.10 1.78 4.10 -51.93 -0.21 1.57 16 30 H 0.29 6.41 8.31 -40.82 -0.34 6.07 16 31 H 0.16 3.12 6.91 -52.48 -0.36 2.76 16 32 H 0.41 2.32 9.11 45.56 0.42 2.74 16 33 H 0.15 1.77 7.61 -52.49 -0.40 1.37 16 34 H 0.09 1.37 5.34 -51.93 -0.28 1.10 16 35 H 0.08 1.13 7.49 -51.93 -0.39 0.74 16 36 H 0.13 2.17 4.04 -51.93 -0.21 1.96 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -30.08 325.10 -5.57 -35.64 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -1.63 Total: 11.20 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.11 Total: -18.14 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.62 Total: -36.92 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -2.56 Total: -62.36 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -4.27 Total: 12.91 kcal Atomic # 16 Polarization: 55.31 SS G_CDS: -0.54 Total: 54.76 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.08 -5.57 -35.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408520.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.121 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds