Wall clock time and date at job start Sat Apr 11 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99794 * 2 1 4 4 C 1.38305 * 110.99821 * 123.95407 * 2 1 3 5 5 N 1.32411 * 119.81325 * 302.64881 * 4 2 1 6 6 C 1.31851 * 121.78419 * 179.71499 * 5 4 2 7 7 C 1.38456 * 121.20548 * 0.56608 * 6 5 4 8 8 Br 1.89096 * 120.25907 * 179.74852 * 7 6 5 9 9 C 1.38403 * 119.48443 * 359.72374 * 7 6 5 10 10 C 1.39984 * 118.36054 * 359.97438 * 9 7 6 11 11 C 1.47427 * 120.60274 * 179.97438 * 10 9 7 12 12 O 1.21610 * 119.99531 * 136.95714 * 11 10 9 13 13 N 1.34772 * 120.00106 * 316.96315 * 11 10 9 14 14 C 1.46490 * 120.00533 * 355.12374 * 13 11 10 15 15 C 1.46504 * 119.99673 * 175.12854 * 13 11 10 16 16 C 1.50698 * 109.47508 * 89.99717 * 15 13 11 17 17 H 1.07999 * 119.99718 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00089 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99814 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00235 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47058 * 90.00112 * 20 18 16 22 22 H 1.48504 * 109.47514 * 210.00117 * 20 18 16 23 23 H 1.48504 * 109.47278 * 330.00147 * 20 18 16 24 24 H 1.09005 * 109.47447 * 60.00052 * 1 2 3 25 25 H 1.09000 * 109.47098 * 300.00149 * 1 2 3 26 26 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47453 * 59.07596 * 3 2 1 28 28 H 1.09004 * 109.46780 * 179.07907 * 3 2 1 29 29 H 1.09007 * 109.47055 * 299.06993 * 3 2 1 30 30 H 1.08002 * 119.39975 * 180.29212 * 6 5 4 31 31 H 1.08005 * 120.82342 * 180.02562 * 9 7 6 32 32 H 1.09000 * 109.47449 * 86.04409 * 14 13 11 33 33 H 1.09003 * 109.47865 * 206.04986 * 14 13 11 34 34 H 1.09007 * 109.47049 * 326.05077 * 14 13 11 35 35 H 1.09008 * 109.47065 * 209.99810 * 15 13 11 36 36 H 1.09000 * 109.47298 * 329.99393 * 15 13 11 37 37 H 0.96995 * 119.99923 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9646 -0.7212 1.0710 5 7 1.6219 -0.3861 2.3053 6 6 2.0668 -1.0499 3.3541 7 6 2.9264 -2.1257 3.2104 8 35 3.5538 -3.0543 4.7335 9 6 3.3224 -2.5167 1.9431 10 6 2.8331 -1.8019 0.8435 11 6 3.2232 -2.1754 -0.5283 12 8 2.3880 -2.2028 -1.4118 13 7 4.5054 -2.4866 -0.8031 14 6 5.5307 -2.3510 0.2343 15 6 4.8738 -2.9604 -2.1396 16 6 5.2375 -1.7833 -3.0074 17 1 5.1985 -0.7823 -2.6037 18 6 5.6209 -1.9842 -4.3164 19 7 5.9387 -0.9569 -5.0736 20 14 5.6905 -3.7156 -5.0140 21 1 4.3742 -4.0636 -5.6069 22 1 6.7396 -3.7851 -6.0628 23 1 6.0129 -4.6747 -3.9271 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6326 1.8999 0.8815 28 1 3.0849 1.3424 0.0165 29 1 1.6594 1.8896 -0.8983 30 1 1.7587 -0.7461 4.3437 31 1 3.9919 -3.3531 1.8059 32 1 5.5646 -3.2613 0.8329 33 1 6.5016 -2.1873 -0.2334 34 1 5.2889 -1.5033 0.8756 35 1 5.7279 -3.6335 -2.0638 36 1 4.0310 -3.4914 -2.5820 37 1 6.2089 -1.0983 -5.9944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330749893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:32 Heat of formation + Delta-G solvation = 37.830307 kcal Electronic energy + Delta-G solvation = -22120.324647 eV Core-core repulsion = 18752.359118 eV Total energy + Delta-G solvation = -3367.965529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99200 -38.60319 -37.05939 -34.90723 -33.19791 -32.54897 -31.88759 -29.36240 -28.45623 -27.53882 -26.24322 -24.99364 -24.49716 -22.35476 -21.52886 -19.10610 -17.32451 -17.25246 -16.87527 -16.63082 -15.63250 -15.16839 -15.05307 -14.52907 -14.15860 -13.93885 -13.80392 -13.53203 -13.33130 -12.65433 -12.36287 -12.32609 -12.23633 -12.00343 -11.96923 -11.65871 -11.50457 -11.36824 -10.94520 -10.74752 -10.53570 -10.18686 -10.07276 -9.87123 -9.52753 -9.18821 -8.90695 -8.57039 -8.50816 -7.72877 -6.06549 -4.04961 0.49233 0.78392 1.22654 3.06636 3.29875 3.35363 3.37587 3.45631 3.63298 3.84709 4.21193 4.40866 4.46374 4.62163 4.84738 5.17942 5.21648 5.29247 5.40544 5.46981 5.51579 5.55270 5.60932 5.71070 5.76076 5.92178 5.97889 6.03539 6.10883 6.66651 6.84303 6.90584 7.19173 7.29978 7.52399 7.61580 8.17198 8.48270 8.90857 8.98991 9.53380 11.06953 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.004033 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.234438 B = 6940.316814 C = 8411.886603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.482 5.482 3 C 0.033 3.967 4 C 0.354 3.646 5 N -0.506 5.506 6 C 0.156 3.844 7 C -0.160 4.160 8 Br -0.033 7.033 9 C -0.018 4.018 10 C -0.132 4.132 11 C 0.559 3.441 12 O -0.497 6.497 13 N -0.594 5.594 14 C 0.082 3.918 15 C 0.219 3.781 16 C -0.525 4.525 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.875 3.125 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.078 0.922 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.037 0.963 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -2.039 21.992 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.204 5.204 3 C -0.114 4.114 4 C 0.126 3.874 5 N -0.219 5.219 6 C -0.006 4.006 7 C -0.241 4.241 8 Br 0.051 6.949 9 C -0.046 4.046 10 C -0.140 4.140 11 C 0.343 3.657 12 O -0.371 6.371 13 N -0.327 5.327 14 C -0.062 4.062 15 C 0.098 3.902 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.702 3.298 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.182 0.818 31 H 0.173 0.827 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.301 -1.849 21.507 22.487 hybrid contribution 0.373 -0.859 -0.154 0.949 sum -5.928 -2.709 21.353 22.326 Atomic orbital electron populations 1.22330 0.84483 1.02714 1.01372 1.59845 1.09892 1.15039 1.35635 1.22414 1.00924 0.86342 1.01671 1.19939 0.89692 0.90654 0.87134 1.68012 1.24766 1.29707 0.99394 1.22704 0.90722 0.89183 0.97994 1.22776 1.05868 1.01990 0.93516 1.96741 1.87620 1.75210 1.35310 1.21932 0.95184 0.97957 0.89531 1.21073 0.99829 0.97385 0.95669 1.17492 0.83181 0.78904 0.86130 1.90800 1.50186 1.50145 1.46006 1.47750 1.05993 1.65180 1.13745 1.21790 0.93608 0.99547 0.91290 1.19697 0.95803 0.95893 0.78777 1.21299 1.45206 0.93962 0.95884 0.90679 1.24843 0.94699 0.96792 0.96619 1.69897 1.45865 1.30005 1.07823 0.86878 0.78315 0.85278 0.79362 1.19892 1.21111 1.19097 0.90304 0.94265 0.91327 0.94330 0.91249 0.89963 0.81760 0.82699 0.93653 0.90048 0.92642 0.95050 0.94531 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 9.36 60.07 0.56 1.09 16 2 N -0.48 -8.03 3.74 -188.74 -0.71 -8.74 16 3 C 0.03 0.48 9.45 60.07 0.57 1.05 16 4 C 0.35 5.68 5.29 -155.17 -0.82 4.86 16 5 N -0.51 -6.99 9.65 -12.18 -0.12 -7.11 16 6 C 0.16 1.75 10.92 -17.46 -0.19 1.56 16 7 C -0.16 -1.79 6.24 -39.44 -0.25 -2.04 16 8 Br -0.03 -0.30 33.72 -68.01 -2.29 -2.60 16 9 C -0.02 -0.24 7.80 -38.87 -0.30 -0.54 16 10 C -0.13 -2.18 4.93 -104.65 -0.52 -2.69 16 11 C 0.56 11.61 7.04 -12.52 -0.09 11.52 16 12 O -0.50 -12.30 15.84 5.27 0.08 -12.22 16 13 N -0.59 -12.16 2.86 -184.23 -0.53 -12.69 16 14 C 0.08 1.26 9.00 59.84 0.54 1.80 16 15 C 0.22 5.26 4.17 -5.19 -0.02 5.24 16 16 C -0.52 -14.95 9.94 -34.44 -0.34 -15.29 16 17 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 20 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.49 7.90 -51.93 -0.41 0.08 16 26 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 27 H 0.04 0.49 8.07 -51.93 -0.42 0.07 16 28 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 29 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.16 1.79 6.14 -52.48 -0.32 1.47 16 32 H 0.05 0.55 6.75 -51.93 -0.35 0.20 16 33 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 34 H 0.05 0.79 6.64 -51.93 -0.34 0.44 16 35 H 0.03 0.71 7.13 -51.92 -0.37 0.34 16 36 H 0.04 0.93 6.92 -51.93 -0.36 0.58 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -33.59 332.15 -8.10 -41.69 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.69 Total: -1.82 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.96 Total: 8.56 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.58 Total: -55.30 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.29 Total: -2.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.59 -8.10 -41.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330749893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.523 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds