Wall clock time and date at job start Sat Apr 11 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99794 * 2 1 4 4 C 1.38305 * 110.99821 * 123.95407 * 2 1 3 5 5 N 1.32411 * 119.81325 * 302.64881 * 4 2 1 6 6 C 1.31851 * 121.78419 * 179.71499 * 5 4 2 7 7 C 1.38456 * 121.20548 * 0.56608 * 6 5 4 8 8 Br 1.89096 * 120.25907 * 179.74852 * 7 6 5 9 9 C 1.38403 * 119.48443 * 359.72374 * 7 6 5 10 10 C 1.39984 * 118.36054 * 359.97438 * 9 7 6 11 11 C 1.47427 * 120.60274 * 179.97438 * 10 9 7 12 12 O 1.21610 * 119.99531 * 136.95714 * 11 10 9 13 13 N 1.34772 * 120.00106 * 316.96315 * 11 10 9 14 14 C 1.46490 * 120.00533 * 355.12374 * 13 11 10 15 15 C 1.46504 * 119.99673 * 175.12854 * 13 11 10 16 16 C 1.50698 * 109.47508 * 89.99717 * 15 13 11 17 17 H 1.07999 * 119.99718 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00089 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99814 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00235 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47058 * 90.00112 * 20 18 16 22 22 H 1.48504 * 109.47514 * 210.00117 * 20 18 16 23 23 H 1.48504 * 109.47278 * 330.00147 * 20 18 16 24 24 H 1.09005 * 109.47447 * 60.00052 * 1 2 3 25 25 H 1.09000 * 109.47098 * 300.00149 * 1 2 3 26 26 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47453 * 59.07596 * 3 2 1 28 28 H 1.09004 * 109.46780 * 179.07907 * 3 2 1 29 29 H 1.09007 * 109.47055 * 299.06993 * 3 2 1 30 30 H 1.08002 * 119.39975 * 180.29212 * 6 5 4 31 31 H 1.08005 * 120.82342 * 180.02562 * 9 7 6 32 32 H 1.09000 * 109.47449 * 86.04409 * 14 13 11 33 33 H 1.09003 * 109.47865 * 206.04986 * 14 13 11 34 34 H 1.09007 * 109.47049 * 326.05077 * 14 13 11 35 35 H 1.09008 * 109.47065 * 209.99810 * 15 13 11 36 36 H 1.09000 * 109.47298 * 329.99393 * 15 13 11 37 37 H 0.96995 * 119.99923 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9646 -0.7212 1.0710 5 7 1.6219 -0.3861 2.3053 6 6 2.0668 -1.0499 3.3541 7 6 2.9264 -2.1257 3.2104 8 35 3.5538 -3.0543 4.7335 9 6 3.3224 -2.5167 1.9431 10 6 2.8331 -1.8019 0.8435 11 6 3.2232 -2.1754 -0.5283 12 8 2.3880 -2.2028 -1.4118 13 7 4.5054 -2.4866 -0.8031 14 6 5.5307 -2.3510 0.2343 15 6 4.8738 -2.9604 -2.1396 16 6 5.2375 -1.7833 -3.0074 17 1 5.1985 -0.7823 -2.6037 18 6 5.6209 -1.9842 -4.3164 19 7 5.9387 -0.9569 -5.0736 20 14 5.6905 -3.7156 -5.0140 21 1 4.3742 -4.0636 -5.6069 22 1 6.7396 -3.7851 -6.0628 23 1 6.0129 -4.6747 -3.9271 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6326 1.8999 0.8815 28 1 3.0849 1.3424 0.0165 29 1 1.6594 1.8896 -0.8983 30 1 1.7587 -0.7461 4.3437 31 1 3.9919 -3.3531 1.8059 32 1 5.5646 -3.2613 0.8329 33 1 6.5016 -2.1873 -0.2334 34 1 5.2889 -1.5033 0.8756 35 1 5.7279 -3.6335 -2.0638 36 1 4.0310 -3.4914 -2.5820 37 1 6.2089 -1.0983 -5.9944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330749893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:32 Heat of formation + Delta-G solvation = 14.824450 kcal Electronic energy + Delta-G solvation = -22121.322256 eV Core-core repulsion = 18752.359118 eV Total energy + Delta-G solvation = -3368.963138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14204 -40.12511 -38.17635 -36.58941 -34.83061 -34.00212 -33.11026 -30.42176 -30.22804 -28.67528 -27.64607 -26.15783 -25.85119 -24.04014 -22.72510 -20.60088 -19.11643 -18.43144 -18.33915 -18.02854 -17.18217 -16.48989 -16.23140 -16.08030 -15.66024 -15.17378 -15.10382 -14.79704 -14.59879 -14.37325 -13.83327 -13.68710 -13.61432 -13.31495 -13.15687 -13.10097 -12.84569 -12.82060 -12.42801 -12.26749 -12.02586 -11.71909 -11.57896 -11.20601 -10.97805 -10.79272 -10.65279 -9.95129 -9.65053 -9.40777 -8.29900 -6.34657 -0.57588 -0.25459 0.34038 1.35509 1.40122 1.47861 1.74476 2.13116 2.34287 2.46940 2.50228 3.04444 3.18236 3.45949 3.52404 3.75119 4.04799 4.12441 4.28664 4.28923 4.39439 4.45773 4.49230 4.57626 4.69316 4.79127 4.81217 4.85572 4.88816 4.94567 5.01442 5.47706 5.59753 5.72895 6.07577 6.27108 6.46119 6.62952 6.66630 7.23421 7.37976 8.87351 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.004033 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.234438 B = 6940.316814 C = 8411.886603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.517 5.517 3 C 0.039 3.961 4 C 0.345 3.655 5 N -0.512 5.512 6 C 0.167 3.833 7 C -0.155 4.155 8 Br -0.002 7.002 9 C -0.006 4.006 10 C -0.158 4.158 11 C 0.556 3.444 12 O -0.553 6.553 13 N -0.602 5.602 14 C 0.077 3.923 15 C 0.227 3.773 16 C -0.531 4.531 17 H 0.025 0.975 18 C 0.011 3.989 19 N -0.947 5.947 20 Si 0.947 3.053 21 H -0.277 1.277 22 H -0.277 1.277 23 H -0.234 1.234 24 H 0.083 0.917 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.201 0.799 31 H 0.172 0.828 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.022 0.978 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 -3.963 24.956 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.240 5.240 3 C -0.107 4.107 4 C 0.117 3.883 5 N -0.224 5.224 6 C 0.005 3.995 7 C -0.236 4.236 8 Br 0.083 6.917 9 C -0.034 4.034 10 C -0.166 4.166 11 C 0.343 3.657 12 O -0.431 6.431 13 N -0.334 5.334 14 C -0.065 4.065 15 C 0.105 3.895 16 C -0.570 4.570 17 H 0.043 0.957 18 C -0.187 4.187 19 N -0.587 5.587 20 Si 0.770 3.230 21 H -0.203 1.203 22 H -0.202 1.202 23 H -0.157 1.157 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.218 0.782 31 H 0.189 0.811 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.969 -3.772 24.534 25.530 hybrid contribution 0.281 -0.182 -0.897 0.957 sum -5.688 -3.953 23.637 24.631 Atomic orbital electron populations 1.22294 0.83365 1.02255 1.02353 1.59793 1.11215 1.15877 1.37102 1.22347 0.99698 0.86062 1.02610 1.19912 0.89860 0.90714 0.87836 1.68061 1.25161 1.30232 0.98972 1.23352 0.89272 0.88218 0.98626 1.22882 1.05091 1.01781 0.93860 1.96796 1.87233 1.74536 1.33137 1.22030 0.94650 0.97505 0.89174 1.20710 1.02289 0.99485 0.94132 1.18100 0.82604 0.77477 0.87514 1.90750 1.51630 1.52428 1.48243 1.47819 1.07217 1.64902 1.13423 1.22062 0.91795 1.02175 0.90484 1.19397 0.95802 0.94221 0.80099 1.21507 1.45056 0.93426 0.96972 0.95684 1.25843 0.94109 1.01809 0.96909 1.70060 1.47336 1.32921 1.08406 0.85727 0.78179 0.79726 0.79380 1.20269 1.20214 1.15677 0.89796 0.92700 0.92445 0.92487 0.93096 0.89801 0.78236 0.81118 0.89395 0.90614 0.91562 0.92500 0.96042 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 9.36 127.69 1.20 2.43 16 2 N -0.52 -17.71 3.74 -751.04 -2.81 -20.52 16 3 C 0.04 1.17 9.45 127.69 1.21 2.38 16 4 C 0.34 10.97 5.29 133.63 0.71 11.68 16 5 N -0.51 -13.20 9.65 -192.44 -1.86 -15.06 16 6 C 0.17 3.22 10.92 84.74 0.93 4.15 16 7 C -0.15 -2.94 6.24 22.36 0.14 -2.81 16 8 Br 0.00 -0.02 33.72 -20.37 -0.69 -0.71 16 9 C -0.01 -0.14 7.80 22.73 0.18 0.04 16 10 C -0.16 -5.17 4.93 -19.88 -0.10 -5.27 16 11 C 0.56 23.62 7.04 86.66 0.61 24.23 16 12 O -0.55 -28.63 15.84 -4.06 -0.06 -28.69 16 13 N -0.60 -24.68 2.86 -855.04 -2.44 -27.12 16 14 C 0.08 2.24 9.00 127.77 1.15 3.39 16 15 C 0.23 10.94 4.17 85.63 0.36 11.29 16 16 C -0.53 -31.35 9.94 25.60 0.25 -31.10 16 17 H 0.02 1.67 8.06 -2.91 -0.02 1.65 16 18 C 0.01 0.65 5.47 84.65 0.46 1.11 16 19 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 20 Si 0.95 44.14 27.47 68.60 1.88 46.02 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.23 -9.60 6.54 99.48 0.65 -8.95 16 24 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.05 1.34 7.90 -2.39 -0.02 1.32 16 26 H 0.06 1.71 8.12 -2.39 -0.02 1.69 16 27 H 0.06 1.45 8.07 -2.39 -0.02 1.43 16 28 H 0.05 1.66 8.11 -2.38 -0.02 1.64 16 29 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.20 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.17 3.36 6.14 -2.91 -0.02 3.35 16 32 H 0.09 1.83 6.75 -2.39 -0.02 1.81 16 33 H 0.08 2.30 8.04 -2.39 -0.02 2.28 16 34 H 0.07 1.79 6.64 -2.38 -0.02 1.77 16 35 H 0.06 2.46 7.13 -2.38 -0.02 2.44 16 36 H 0.02 1.11 6.92 -2.39 -0.02 1.09 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -77.49 332.15 2.44 -75.05 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.03 Total: 9.42 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 7.09 Total: 21.52 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.81 Total: -122.60 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.06 Total: -28.69 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -77.49 2.44 -75.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330749893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.874 kcal (2) G-P(sol) polarization free energy of solvation -77.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds