Wall clock time and date at job start Sat Apr 11 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35617 * 124.93238 * 2 1 4 4 C 1.35449 * 107.13029 * 179.97438 * 3 2 1 5 5 Br 1.89099 * 127.23094 * 179.97438 * 4 3 2 6 6 C 1.41528 * 105.52725 * 359.97438 * 4 3 2 7 7 C 1.47684 * 126.45862 * 179.97438 * 6 4 3 8 8 O 1.21571 * 120.00097 * 354.34799 * 7 6 4 9 9 N 1.34776 * 119.99761 * 174.34204 * 7 6 4 10 10 C 1.46505 * 119.99904 * 4.30672 * 9 7 6 11 11 C 1.50703 * 109.46881 * 83.61489 * 10 9 7 12 12 H 1.07997 * 120.00026 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99689 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00348 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99690 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47075 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46799 * 120.00199 * 15 13 11 18 18 H 1.48498 * 109.47454 * 239.99894 * 15 13 11 19 19 C 1.46496 * 120.00161 * 184.30614 * 9 7 6 20 20 C 1.52998 * 109.47138 * 94.92912 * 19 9 7 21 21 C 1.53004 * 117.49744 * 243.74874 * 20 19 9 22 22 C 1.53005 * 117.49730 * 175.09199 * 20 19 9 23 23 N 1.28473 * 124.93611 * 179.69332 * 2 1 3 24 24 H 1.08998 * 109.46809 * 90.00057 * 1 2 3 25 25 H 1.09002 * 109.47106 * 210.00276 * 1 2 3 26 26 H 1.08997 * 109.47370 * 329.99621 * 1 2 3 27 27 H 1.07999 * 126.43294 * 359.94209 * 3 2 1 28 28 H 1.09004 * 109.46829 * 203.60434 * 10 9 7 29 29 H 1.08996 * 109.47527 * 323.61160 * 10 9 7 30 30 H 0.96998 * 120.00339 * 179.97438 * 14 13 11 31 31 H 1.08999 * 109.47219 * 214.93079 * 19 9 7 32 32 H 1.09011 * 109.46947 * 334.93110 * 19 9 7 33 33 H 1.08990 * 115.54985 * 29.42140 * 20 19 9 34 34 H 1.09000 * 117.49896 * 0.02562 * 21 20 19 35 35 H 1.09001 * 117.49574 * 145.02754 * 21 20 19 36 36 H 1.09000 * 117.49770 * 214.97969 * 22 20 19 37 37 H 1.08998 * 117.50148 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.1118 0.0000 4 6 3.5312 0.6977 0.0006 5 35 5.0809 1.7815 0.0002 6 6 3.4751 -0.7164 0.0015 7 6 4.6271 -1.6405 0.0019 8 8 5.7568 -1.2036 -0.1023 9 7 4.4260 -2.9681 0.1179 10 6 3.0622 -3.5024 0.1486 11 6 2.5544 -3.6647 -1.2610 12 1 3.1843 -3.3963 -2.0961 13 6 1.2856 -4.1559 -1.4843 14 7 0.5187 -4.4833 -0.4674 15 14 0.6559 -4.3564 -3.2316 16 1 1.7045 -3.9209 -4.1887 17 1 0.3236 -5.7827 -3.4773 18 1 -0.5607 -3.5256 -3.4177 19 6 5.5710 -3.8769 0.2132 20 6 5.8746 -4.1621 1.6854 21 6 7.2253 -3.6948 2.2316 22 6 6.9689 -5.1854 1.9957 23 7 2.2008 -1.0532 0.0056 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.8965 2.1352 -0.0009 28 1 3.0628 -4.4712 0.6483 29 1 2.4143 -2.8141 0.6912 30 1 -0.3740 -4.8285 -0.6246 31 1 5.3369 -4.8111 -0.2971 32 1 6.4410 -3.4155 -0.2544 33 1 5.0183 -4.1213 2.3584 34 1 7.8974 -3.1839 1.5422 35 1 7.2575 -3.3471 3.2642 36 1 6.8326 -5.8176 2.8731 37 1 7.4723 -5.6557 1.1510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339930112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:53 Heat of formation + Delta-G solvation = 90.605070 kcal Electronic energy + Delta-G solvation = -22270.152224 eV Core-core repulsion = 18904.475180 eV Total energy + Delta-G solvation = -3365.677044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.15977 -38.82164 -36.79137 -34.60604 -33.18913 -32.33652 -31.36571 -29.17345 -27.99621 -27.11120 -25.69840 -23.02864 -22.09851 -21.84456 -20.87101 -20.14507 -18.62231 -16.87600 -16.35591 -16.09094 -15.80840 -15.49281 -14.50389 -14.36712 -14.22174 -13.54875 -13.47135 -13.27285 -12.71176 -12.53683 -12.33387 -12.20595 -11.87943 -11.56382 -11.23552 -11.19799 -10.92555 -10.81261 -10.72395 -10.24273 -10.13318 -9.93834 -9.70305 -9.56772 -9.45294 -8.93251 -8.79769 -8.37517 -8.33555 -7.57721 -6.03421 -4.04548 2.00132 2.19700 2.30800 3.02449 3.23459 3.32611 3.38977 3.90345 4.13915 4.23855 4.43529 4.80327 4.94558 5.14684 5.25587 5.30538 5.31470 5.35057 5.42259 5.62247 5.74473 5.78852 5.86546 5.90695 6.17440 6.20268 6.30533 6.41956 6.50797 6.67236 6.93043 7.00331 7.52033 7.77756 7.90163 8.26478 8.33673 8.46125 8.97169 9.12298 9.57993 11.04279 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.008817 B = 0.006501 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.802782 B = 4306.108848 C = 6682.391676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.289 5.289 3 C -0.001 4.001 4 C -0.162 4.162 5 Br -0.007 7.007 6 C 0.011 3.989 7 C 0.597 3.403 8 O -0.549 6.549 9 N -0.582 5.582 10 C 0.229 3.771 11 C -0.507 4.507 12 H 0.053 0.947 13 C 0.069 3.931 14 N -0.892 5.892 15 Si 0.884 3.116 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.286 1.286 19 C 0.150 3.850 20 C -0.160 4.160 21 C -0.176 4.176 22 C -0.180 4.180 23 N -0.174 5.174 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.181 0.819 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.259 0.741 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 10.272 4.224 11.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.077 5.077 3 C -0.146 4.146 4 C -0.253 4.253 5 Br 0.076 6.924 6 C -0.151 4.151 7 C 0.383 3.617 8 O -0.427 6.427 9 N -0.312 5.312 10 C 0.109 3.891 11 C -0.546 4.546 12 H 0.072 0.928 13 C -0.133 4.133 14 N -0.532 5.532 15 Si 0.713 3.287 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.212 1.212 19 C 0.026 3.974 20 C -0.179 4.179 21 C -0.213 4.213 22 C -0.218 4.218 23 N -0.008 5.008 24 H 0.101 0.899 25 H 0.122 0.878 26 H 0.107 0.893 27 H 0.198 0.802 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.908 9.869 4.205 11.115 hybrid contribution -0.655 0.254 -1.054 1.267 sum 2.252 10.123 3.151 10.839 Atomic orbital electron populations 1.22135 0.73055 1.05211 1.04495 1.45943 1.08073 1.03123 1.50536 1.22653 0.89528 0.94107 1.08297 1.21814 0.92490 0.93860 1.17117 1.96540 1.33659 1.64140 1.98039 1.21864 0.91958 0.91552 1.09731 1.16825 0.86008 0.81854 0.77028 1.90725 1.22527 1.77194 1.52244 1.48063 1.09438 1.04638 1.69027 1.19833 0.75877 0.95375 0.98012 1.21379 0.99291 1.41832 0.92088 0.92841 1.24759 0.96514 0.95592 0.96386 1.69940 1.09155 1.44532 1.29584 0.86661 0.78729 0.77700 0.85643 1.19946 1.21044 1.21231 1.20880 0.89759 0.93934 0.92815 1.22791 0.92916 1.03474 0.98713 1.22982 1.00002 0.96567 1.01748 1.22906 1.03618 0.92225 1.03018 1.74708 1.01788 1.10187 1.14157 0.89856 0.87756 0.89282 0.80183 0.95122 0.91372 0.93167 0.90160 0.90320 0.87822 0.88658 0.89531 0.89216 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.10 11.32 59.85 0.68 1.78 16 2 N -0.29 -4.84 3.72 -67.95 -0.25 -5.09 16 3 C 0.00 -0.01 11.48 -16.87 -0.19 -0.21 16 4 C -0.16 -2.98 6.68 -39.32 -0.26 -3.24 16 5 Br -0.01 -0.12 32.72 -68.01 -2.23 -2.35 16 6 C 0.01 0.24 6.81 -82.77 -0.56 -0.32 16 7 C 0.60 13.66 7.62 -12.40 -0.09 13.57 16 8 O -0.55 -12.83 15.11 5.30 0.08 -12.75 16 9 N -0.58 -13.02 2.47 -176.23 -0.44 -13.46 16 10 C 0.23 5.64 4.79 -5.19 -0.02 5.61 16 11 C -0.51 -13.50 8.49 -34.44 -0.29 -13.79 16 12 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -24.23 13.29 55.43 0.74 -23.49 16 15 Si 0.88 20.88 29.54 -169.99 -5.02 15.86 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.15 2.88 5.74 -4.04 -0.02 2.86 16 20 C -0.16 -2.69 6.01 -90.62 -0.54 -3.23 16 21 C -0.18 -2.61 10.18 -26.69 -0.27 -2.88 16 22 C -0.18 -2.47 10.25 -26.69 -0.27 -2.74 16 23 N -0.17 -3.71 7.83 33.42 0.26 -3.45 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.03 0.79 8.02 -51.93 -0.42 0.37 16 29 H 0.07 1.76 5.30 -51.93 -0.28 1.48 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.36 16 31 H 0.08 1.53 8.11 -51.93 -0.42 1.10 16 32 H 0.08 1.52 6.96 -51.92 -0.36 1.15 16 33 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -31.23 338.41 -8.54 -39.77 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.82 Total: 0.72 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.96 Total: -0.86 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.31 Total: -45.49 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -2.23 Total: -2.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.23 -8.54 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339930112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.376 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds