Wall clock time and date at job start Sat Apr 11 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35922 * 117.00008 * 2 1 4 4 C 1.38743 * 120.03968 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94783 * 180.02562 * 4 3 2 6 6 C 1.38369 * 120.04742 * 0.02562 * 5 4 3 7 7 Br 1.89099 * 119.95047 * 179.97438 * 6 5 4 8 8 C 1.38320 * 120.08920 * 0.02562 * 6 5 4 9 9 C 1.50698 * 119.97180 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47294 * 279.99614 * 9 8 6 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99544 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47059 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47353 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00290 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99814 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00437 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00014 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 59.99980 * 19 17 15 21 21 H 1.48490 * 109.47405 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47399 * 300.00490 * 19 17 15 23 23 C 1.38160 * 120.04920 * 0.25156 * 8 6 5 24 24 H 1.08996 * 109.47279 * 299.99753 * 1 2 3 25 25 H 1.08999 * 109.47236 * 60.00439 * 1 2 3 26 26 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.02894 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.97142 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46665 * 159.99995 * 9 8 6 30 30 H 1.09000 * 109.47722 * 40.00327 * 9 8 6 31 31 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 32 32 H 1.08996 * 109.47366 * 299.99598 * 13 12 10 33 33 H 1.08992 * 109.47635 * 60.00246 * 13 12 10 34 34 H 1.09004 * 109.46832 * 299.99894 * 14 13 12 35 35 H 1.09001 * 109.47420 * 59.99456 * 14 13 12 36 36 H 0.96999 * 120.00397 * 179.97438 * 18 17 15 37 37 H 1.07992 * 120.02244 * 179.70734 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9202 3.6049 0.0000 6 6 3.3021 3.6762 -0.0016 7 35 4.1604 5.3612 -0.0031 8 6 4.0563 2.5168 -0.0032 9 6 5.5611 2.5976 -0.0055 10 6 6.0474 2.8713 -1.4055 11 8 5.2503 2.9896 -2.3119 12 7 7.3679 2.9846 -1.6501 13 6 7.8404 3.2512 -3.0109 14 6 9.3683 3.3318 -3.0136 15 6 9.8545 3.6068 -4.4132 16 1 9.1447 3.7129 -5.2203 17 6 11.2054 3.7228 -4.6635 18 7 12.0698 3.5930 -3.6808 19 14 11.8080 4.0628 -6.3986 20 1 11.2429 5.3507 -6.8753 21 1 13.2909 4.1412 -6.4011 22 1 11.3692 2.9664 -7.2989 23 6 3.4311 1.2847 -0.0085 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2126 2.3200 0.0005 28 1 1.3330 4.5113 0.0000 29 1 5.9762 1.6526 0.3450 30 1 5.8829 3.4028 0.6548 31 1 8.0053 2.8896 -0.9252 32 1 7.5184 2.4464 -3.6716 33 1 7.4258 4.1965 -3.3609 34 1 9.6908 4.1365 -2.3527 35 1 9.7828 2.3863 -2.6637 36 1 13.0202 3.6743 -3.8569 37 1 4.0204 0.3798 -0.0145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342651515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:01 Heat of formation + Delta-G solvation = -59.124786 kcal Electronic energy + Delta-G solvation = -20607.960882 eV Core-core repulsion = 17203.498314 eV Total energy + Delta-G solvation = -3404.462569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55001 -39.25521 -37.69983 -34.81101 -32.99103 -32.73169 -31.99985 -30.02923 -29.37480 -27.52529 -27.25127 -24.59250 -22.80779 -21.78592 -20.87801 -20.00685 -18.05410 -16.87278 -16.74166 -16.24698 -16.02927 -16.01116 -15.23266 -15.04542 -14.46120 -14.35464 -14.07502 -13.53834 -13.41858 -13.18038 -12.77554 -12.38071 -12.25853 -12.00388 -11.85742 -11.68955 -11.22680 -11.18490 -10.99378 -10.64295 -10.42030 -10.27930 -10.17401 -9.79235 -9.49952 -9.27566 -8.99435 -8.50459 -8.31279 -8.29717 -6.07587 -4.10292 0.96391 1.05091 1.65324 2.91892 3.06508 3.30790 3.32480 3.36189 3.39734 3.85480 4.39137 4.44062 4.46955 4.72136 4.80481 4.82275 4.95467 5.12560 5.13503 5.23544 5.29357 5.33558 5.47938 5.66660 5.80855 5.98929 6.10241 6.31722 6.39226 6.39634 6.77861 6.96695 7.04971 7.54118 7.64565 7.90736 8.05352 8.30189 8.70218 8.95597 9.54362 11.03978 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.002781 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.537017 B =10067.075163 C =11129.306034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.142 3.858 4 C -0.207 4.207 5 C -0.050 4.050 6 C -0.110 4.110 7 Br -0.045 7.045 8 C 0.009 3.991 9 C -0.118 4.118 10 C 0.512 3.488 11 O -0.537 6.537 12 N -0.722 5.722 13 C 0.123 3.877 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.136 4.136 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.397 0.603 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.902 -2.486 14.387 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.096 3.904 4 C -0.226 4.226 5 C -0.070 4.070 6 C -0.189 4.189 7 Br 0.041 6.959 8 C 0.006 3.994 9 C -0.158 4.158 10 C 0.296 3.704 11 O -0.415 6.415 12 N -0.372 5.372 13 C 0.001 3.999 14 C -0.024 4.024 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.155 4.155 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.152 0.848 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.231 0.769 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.867 -1.951 13.741 26.749 hybrid contribution 0.301 -0.086 -0.598 0.675 sum -22.565 -2.037 13.143 26.193 Atomic orbital electron populations 1.23092 0.78200 1.04115 1.01484 1.86094 1.21549 1.26685 1.88406 1.18992 0.92173 0.84256 0.95002 1.21166 1.00164 0.91760 1.09545 1.20819 0.92268 0.97925 0.96001 1.21526 0.94766 0.91405 1.11235 1.96713 1.79762 1.21819 1.97644 1.18950 0.94379 0.91109 0.94937 1.20900 0.91753 1.05628 0.97489 1.20100 0.83052 0.77497 0.89701 1.90702 1.54448 1.50136 1.46179 1.46263 1.06286 1.71931 1.12702 1.21697 0.98052 0.99935 0.80184 1.19316 0.87262 0.97777 0.98078 1.21022 0.91943 1.49354 0.93716 0.92335 1.24990 0.96853 0.95129 0.97286 1.69943 1.02047 1.49880 1.31478 0.86580 0.77473 0.79001 0.84529 1.20115 1.21248 1.20119 1.20214 0.91479 0.97681 1.06147 0.92538 0.92436 0.88097 0.84778 0.84779 0.87455 0.87142 0.76923 0.92664 0.92591 0.95943 0.95959 0.92805 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.25 10.50 -19.50 -0.20 -3.45 16 3 C 0.14 1.61 6.69 -39.22 -0.26 1.35 16 4 C -0.21 -2.08 9.04 -39.44 -0.36 -2.43 16 5 C -0.05 -0.55 9.78 -39.57 -0.39 -0.94 16 6 C -0.11 -1.42 6.10 -39.50 -0.24 -1.66 16 7 Br -0.04 -0.59 31.67 -68.01 -2.15 -2.74 16 8 C 0.01 0.11 4.43 -104.62 -0.46 -0.35 16 9 C -0.12 -1.46 5.25 -29.03 -0.15 -1.61 16 10 C 0.51 8.62 7.42 -10.98 -0.08 8.54 16 11 O -0.54 -11.08 15.95 5.56 0.09 -11.00 16 12 N -0.72 -12.54 5.56 -60.30 -0.33 -12.88 16 13 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 14 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 15 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 19 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.14 -1.66 9.61 -39.44 -0.38 -2.04 16 24 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 25 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 28 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 29 H 0.11 1.03 8.01 -51.93 -0.42 0.62 16 30 H 0.11 1.22 7.14 -51.93 -0.37 0.85 16 31 H 0.40 5.88 8.47 -40.82 -0.35 5.54 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.14 1.51 8.04 -52.49 -0.42 1.09 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -33.29 339.29 -8.44 -41.73 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.76 Total: 0.71 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.91 Total: -8.51 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.40 Total: -38.38 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.12 Total: -14.44 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.15 Total: -2.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.29 -8.44 -41.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342651515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.395 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds