Wall clock time and date at job start Sat Apr 11 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 116.99520 * 2 1 4 4 C 1.38765 * 120.04552 * 180.02562 * 3 2 1 5 5 C 1.38130 * 119.96384 * 179.97438 * 4 3 2 6 6 C 1.38278 * 120.06216 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94419 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47323 * 255.11849 * 7 6 5 9 9 C 1.47962 * 111.00061 * 175.45224 * 8 7 6 10 10 C 1.53934 * 86.17459 * 222.41760 * 9 8 7 11 11 O 1.42909 * 113.73467 * 269.35787 * 10 9 8 12 12 C 1.50704 * 113.73235 * 138.08314 * 10 9 8 13 13 H 1.08003 * 119.99941 * 5.44908 * 12 10 9 14 14 C 1.37875 * 120.00153 * 185.45541 * 12 10 9 15 15 N 1.31524 * 119.99921 * 10.14372 * 14 12 10 16 16 Si 1.86798 * 120.00149 * 190.14648 * 14 12 10 17 17 H 1.48510 * 109.47101 * 94.99126 * 16 14 12 18 18 H 1.48495 * 109.47294 * 214.98924 * 16 14 12 19 19 H 1.48502 * 109.47057 * 334.99349 * 16 14 12 20 20 C 1.47954 * 111.00004 * 76.09043 * 8 7 6 21 21 C 1.38335 * 120.10441 * 0.27707 * 6 5 4 22 22 Br 1.89097 * 119.98352 * 179.72485 * 21 6 5 23 23 C 1.38257 * 120.02919 * 359.49070 * 21 6 5 24 24 H 1.09003 * 109.47156 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47227 * 299.99522 * 1 2 3 26 26 H 1.09000 * 109.47632 * 60.00029 * 1 2 3 27 27 H 1.07993 * 120.01978 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.96988 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47366 * 135.12041 * 7 6 5 30 30 H 1.08997 * 109.47806 * 15.12150 * 7 6 5 31 31 H 1.09001 * 113.75791 * 108.10440 * 9 8 7 32 32 H 1.08992 * 113.75928 * 336.73536 * 9 8 7 33 33 H 0.96695 * 114.00260 * 183.93213 * 11 10 9 34 34 H 0.96993 * 119.99832 * 180.02562 * 15 14 12 35 35 H 1.09004 * 113.76084 * 23.26383 * 20 8 7 36 36 H 1.09000 * 113.85935 * 251.92085 * 20 8 7 37 37 H 1.08001 * 120.02670 * 180.25680 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4315 1.2847 -0.0005 5 6 4.0568 2.5164 -0.0011 6 6 3.3032 3.6758 -0.0016 7 6 3.9880 5.0181 -0.0028 8 7 3.8942 5.6170 1.3354 9 6 4.6496 6.8875 1.4019 10 6 5.1451 6.4014 2.7759 11 8 4.3146 6.8105 3.8646 12 6 6.6087 6.6642 3.0205 13 1 7.1833 7.2300 2.3019 14 6 7.2144 6.1823 4.1615 15 7 6.5768 5.3307 4.9349 16 14 8.9405 6.7389 4.6089 17 1 8.8627 7.8784 5.5581 18 1 9.6740 5.6148 5.2442 19 1 9.6570 7.1661 3.3803 20 6 4.8472 4.9785 2.2700 21 6 1.9216 3.6053 0.0042 22 35 0.8944 5.1930 0.0113 23 6 1.2916 2.3747 -0.0001 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 4.0208 0.3797 -0.0014 28 1 5.1352 2.5740 -0.0011 29 1 3.5043 5.6723 -0.7282 30 1 5.0368 4.8908 -0.2711 31 1 4.0159 7.7730 1.4517 32 1 5.4384 6.9691 0.6542 33 1 4.6540 6.5587 4.7343 34 1 7.0028 4.9920 5.7377 35 1 5.6939 4.5017 1.7761 36 1 4.3732 4.3381 3.0138 37 1 0.2129 2.3197 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348192547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:05 Heat of formation + Delta-G solvation = -17.905094 kcal Electronic energy + Delta-G solvation = -21684.018176 eV Core-core repulsion = 18281.343027 eV Total energy + Delta-G solvation = -3402.675149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25630 -39.01273 -37.47831 -34.31237 -32.27305 -32.14062 -31.30394 -29.34585 -28.23340 -27.01091 -25.38698 -24.93797 -22.63219 -22.37657 -20.67932 -18.56733 -18.08987 -17.21090 -16.46440 -15.87297 -15.51721 -15.06381 -14.92449 -14.39165 -14.27205 -14.00760 -13.66744 -13.42966 -12.91562 -12.75161 -12.32677 -12.03862 -11.94869 -11.62387 -11.58818 -11.33419 -11.03662 -10.91724 -10.66381 -10.58557 -10.37913 -10.30972 -10.01171 -9.78819 -9.16270 -8.75818 -8.73280 -8.22746 -7.98476 -7.71220 -6.23926 -4.32952 1.17013 1.37037 1.86783 3.15092 3.20564 3.29002 3.31356 3.64203 4.27666 4.73275 4.83222 4.87434 4.96358 4.97979 5.07068 5.10732 5.26053 5.32936 5.58742 5.62682 5.73155 5.93568 5.97539 6.09078 6.12291 6.25378 6.38413 6.45187 6.60781 6.65146 6.74013 7.18244 7.24400 7.27625 7.40162 7.75316 7.99976 8.05899 8.68585 9.36298 9.48404 10.80963 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.016053 B = 0.003921 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.789572 B = 7139.813410 C = 8232.141107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.123 3.877 4 C -0.137 4.137 5 C -0.068 4.068 6 C -0.072 4.072 7 C 0.053 3.947 8 N -0.464 5.464 9 C 0.010 3.990 10 C 0.244 3.756 11 O -0.567 6.567 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.073 3.927 15 N -0.887 5.887 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.000 4.000 21 C -0.031 4.031 22 Br -0.036 7.036 23 C -0.186 4.186 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.380 0.620 34 H 0.268 0.732 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.146 -7.728 -11.504 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.077 3.923 4 C -0.156 4.156 5 C -0.087 4.087 6 C -0.075 4.075 7 C -0.076 4.076 8 N -0.187 5.187 9 C -0.118 4.118 10 C 0.202 3.798 11 O -0.374 6.374 12 C -0.582 4.582 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.525 5.525 16 Si 0.723 3.277 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.129 4.129 21 C -0.111 4.111 22 Br 0.050 6.950 23 C -0.206 4.206 24 H 0.117 0.883 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.518 -7.187 -11.699 18.580 hybrid contribution 2.112 -0.420 0.490 2.208 sum -10.406 -7.607 -11.209 17.082 Atomic orbital electron populations 1.23062 0.78478 1.03842 1.01526 1.86065 1.21335 1.26590 1.88968 1.18851 0.92219 0.83747 0.97501 1.20481 0.91254 0.98744 1.05115 1.20938 1.00173 0.90496 0.97139 1.19699 0.91603 0.96116 1.00071 1.21656 0.98131 0.91930 0.95856 1.68707 1.42285 1.03791 1.03876 1.24121 0.95508 0.93711 0.98476 1.19732 0.88240 0.88304 0.83494 1.86098 1.51557 1.81608 1.18137 1.21599 0.94379 1.35494 1.06735 0.91708 1.25053 0.98325 0.93506 0.96143 1.69821 1.38804 1.28895 1.15025 0.86524 0.83830 0.78518 0.78822 1.20367 1.21126 1.19755 1.24562 0.92372 1.00988 0.95002 1.21381 0.93900 0.91679 1.04146 1.96684 1.69108 1.31945 1.97268 1.21071 1.00138 0.90839 1.08587 0.88265 0.92497 0.92663 0.84812 0.84568 0.90197 0.93492 0.90715 0.91786 0.77000 0.92231 0.92511 0.91084 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.86 10.50 -19.41 -0.20 -4.06 16 3 C 0.12 1.67 6.69 -39.22 -0.26 1.41 16 4 C -0.14 -1.86 9.99 -39.43 -0.39 -2.25 16 5 C -0.07 -0.99 9.66 -39.61 -0.38 -1.38 16 6 C -0.07 -1.17 5.10 -104.57 -0.53 -1.70 16 7 C 0.05 0.90 4.14 -4.97 -0.02 0.88 16 8 N -0.46 -9.54 5.95 -239.74 -1.43 -10.97 16 9 C 0.01 0.22 7.37 -2.77 -0.02 0.20 16 10 C 0.24 6.08 1.30 -90.84 -0.12 5.96 16 11 O -0.57 -15.04 13.52 -35.23 -0.48 -15.52 16 12 C -0.54 -14.32 8.58 -34.44 -0.30 -14.62 16 13 H 0.06 1.68 7.84 -52.48 -0.41 1.27 16 14 C 0.07 1.90 5.21 -17.82 -0.09 1.81 16 15 N -0.89 -23.66 11.79 55.43 0.65 -23.01 16 16 Si 0.90 20.23 29.55 -169.99 -5.02 15.20 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.00 -0.01 6.91 -2.78 -0.02 -0.03 16 21 C -0.03 -0.48 6.22 -39.54 -0.25 -0.72 16 22 Br -0.04 -0.55 31.90 -68.01 -2.17 -2.72 16 23 C -0.19 -2.55 8.78 -39.41 -0.35 -2.90 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.45 7.66 -51.92 -0.40 0.06 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.14 1.82 8.00 -52.49 -0.42 1.40 16 29 H 0.08 1.30 7.41 -51.93 -0.38 0.92 16 30 H 0.05 0.78 7.49 -51.93 -0.39 0.39 16 31 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.06 1.29 7.83 -51.93 -0.41 0.88 16 33 H 0.38 10.18 7.19 45.56 0.33 10.51 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.06 1.30 7.64 -51.93 -0.40 0.91 16 36 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.13 1.55 6.30 -52.49 -0.33 1.22 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -28.52 330.08 -9.44 -37.97 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.03 Total: 10.26 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.74 Total: -12.12 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: -0.77 Total: -33.98 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.68 Total: -19.58 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.17 Total: -2.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.52 -9.44 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348192547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.061 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds