Wall clock time and date at job start Sat Apr 11 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 116.99520 * 2 1 4 4 C 1.38765 * 120.04552 * 180.02562 * 3 2 1 5 5 C 1.38130 * 119.96384 * 179.97438 * 4 3 2 6 6 C 1.38278 * 120.06216 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94419 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47323 * 255.11849 * 7 6 5 9 9 C 1.47962 * 111.00061 * 175.45224 * 8 7 6 10 10 C 1.53934 * 86.17459 * 222.41760 * 9 8 7 11 11 O 1.42909 * 113.73467 * 269.35787 * 10 9 8 12 12 C 1.50704 * 113.73235 * 138.08314 * 10 9 8 13 13 H 1.08003 * 119.99941 * 5.44908 * 12 10 9 14 14 C 1.37875 * 120.00153 * 185.45541 * 12 10 9 15 15 N 1.31524 * 119.99921 * 10.14372 * 14 12 10 16 16 Si 1.86798 * 120.00149 * 190.14648 * 14 12 10 17 17 H 1.48510 * 109.47101 * 94.99126 * 16 14 12 18 18 H 1.48495 * 109.47294 * 214.98924 * 16 14 12 19 19 H 1.48502 * 109.47057 * 334.99349 * 16 14 12 20 20 C 1.47954 * 111.00004 * 76.09043 * 8 7 6 21 21 C 1.38335 * 120.10441 * 0.27707 * 6 5 4 22 22 Br 1.89097 * 119.98352 * 179.72485 * 21 6 5 23 23 C 1.38257 * 120.02919 * 359.49070 * 21 6 5 24 24 H 1.09003 * 109.47156 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47227 * 299.99522 * 1 2 3 26 26 H 1.09000 * 109.47632 * 60.00029 * 1 2 3 27 27 H 1.07993 * 120.01978 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.96988 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47366 * 135.12041 * 7 6 5 30 30 H 1.08997 * 109.47806 * 15.12150 * 7 6 5 31 31 H 1.09001 * 113.75791 * 108.10440 * 9 8 7 32 32 H 1.08992 * 113.75928 * 336.73536 * 9 8 7 33 33 H 0.96695 * 114.00260 * 183.93213 * 11 10 9 34 34 H 0.96993 * 119.99832 * 180.02562 * 15 14 12 35 35 H 1.09004 * 113.76084 * 23.26383 * 20 8 7 36 36 H 1.09000 * 113.85935 * 251.92085 * 20 8 7 37 37 H 1.08001 * 120.02670 * 180.25680 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4315 1.2847 -0.0005 5 6 4.0568 2.5164 -0.0011 6 6 3.3032 3.6758 -0.0016 7 6 3.9880 5.0181 -0.0028 8 7 3.8942 5.6170 1.3354 9 6 4.6496 6.8875 1.4019 10 6 5.1451 6.4014 2.7759 11 8 4.3146 6.8105 3.8646 12 6 6.6087 6.6642 3.0205 13 1 7.1833 7.2300 2.3019 14 6 7.2144 6.1823 4.1615 15 7 6.5768 5.3307 4.9349 16 14 8.9405 6.7389 4.6089 17 1 8.8627 7.8784 5.5581 18 1 9.6740 5.6148 5.2442 19 1 9.6570 7.1661 3.3803 20 6 4.8472 4.9785 2.2700 21 6 1.9216 3.6053 0.0042 22 35 0.8944 5.1930 0.0113 23 6 1.2916 2.3747 -0.0001 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 4.0208 0.3797 -0.0014 28 1 5.1352 2.5740 -0.0011 29 1 3.5043 5.6723 -0.7282 30 1 5.0368 4.8908 -0.2711 31 1 4.0159 7.7730 1.4517 32 1 5.4384 6.9691 0.6542 33 1 4.6540 6.5587 4.7343 34 1 7.0028 4.9920 5.7377 35 1 5.6939 4.5017 1.7761 36 1 4.3732 4.3381 3.0138 37 1 0.2129 2.3197 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348192547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:04 Heat of formation + Delta-G solvation = -37.863827 kcal Electronic energy + Delta-G solvation = -21684.883652 eV Core-core repulsion = 18281.343027 eV Total energy + Delta-G solvation = -3403.540624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36882 -40.58646 -38.61501 -36.15790 -34.16556 -33.40894 -32.60564 -30.47183 -29.52086 -28.24988 -26.98580 -26.68986 -24.09588 -23.49699 -21.95298 -20.42194 -19.19466 -19.02310 -17.51844 -17.16197 -16.80176 -16.65934 -16.53514 -15.94015 -15.70719 -15.36146 -14.91454 -14.55876 -14.27576 -14.10619 -13.92139 -13.65317 -13.47643 -13.03997 -12.90660 -12.77681 -12.53364 -12.34066 -12.26726 -12.09913 -11.96411 -11.78418 -11.45918 -11.01076 -10.99202 -10.72172 -10.07156 -9.85671 -9.47628 -9.13505 -8.21378 -6.37818 0.06316 0.25452 0.70609 1.42110 1.45908 1.54523 2.29036 2.39113 2.52359 2.99648 3.27978 3.70519 3.74956 3.91754 4.00622 4.20135 4.29879 4.33798 4.37491 4.41805 4.48942 4.56695 4.57348 4.71415 4.73302 4.78309 4.96515 5.05400 5.11807 5.26064 5.35755 5.46700 5.56642 5.62116 5.74790 6.01625 6.31280 6.38396 6.66686 7.34271 7.41223 8.82539 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.016053 B = 0.003921 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.789572 B = 7139.813410 C = 8232.141107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.125 3.875 4 C -0.141 4.141 5 C -0.073 4.073 6 C -0.096 4.096 7 C 0.057 3.943 8 N -0.463 5.463 9 C 0.019 3.981 10 C 0.218 3.782 11 O -0.577 6.577 12 C -0.564 4.564 13 H 0.063 0.937 14 C 0.033 3.967 15 N -0.909 5.909 16 Si 0.958 3.042 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.017 3.983 21 C -0.044 4.044 22 Br -0.039 7.039 23 C -0.187 4.187 24 H 0.125 0.875 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.153 0.847 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.374 0.626 34 H 0.270 0.730 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 -8.552 -12.367 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.078 3.922 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.098 4.098 7 C -0.071 4.071 8 N -0.185 5.185 9 C -0.109 4.109 10 C 0.178 3.822 11 O -0.384 6.384 12 C -0.602 4.602 13 H 0.081 0.919 14 C -0.168 4.168 15 N -0.548 5.548 16 Si 0.784 3.216 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.112 4.112 21 C -0.124 4.124 22 Br 0.047 6.953 23 C -0.207 4.207 24 H 0.143 0.857 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.171 0.829 28 H 0.162 0.838 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.223 0.777 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.564 -8.014 -12.581 19.503 hybrid contribution 2.026 -0.256 0.732 2.169 sum -10.538 -8.270 -11.849 17.884 Atomic orbital electron populations 1.23394 0.76379 1.05901 1.02212 1.86067 1.23503 1.25735 1.88555 1.18988 0.92437 0.84290 0.96458 1.20730 0.91737 0.99063 1.04440 1.21079 1.00651 0.90545 0.96962 1.19679 0.92080 0.95879 1.02167 1.21633 0.98859 0.92792 0.93864 1.68604 1.41199 1.03085 1.05648 1.24052 0.95884 0.94180 0.96802 1.20099 0.87932 0.89937 0.84255 1.86087 1.52113 1.81929 1.18311 1.21842 0.95240 1.35835 1.07296 0.91869 1.25728 1.01782 0.93333 0.95967 1.69907 1.40200 1.29413 1.15258 0.85552 0.79658 0.77959 0.78481 1.20250 1.20804 1.19266 1.24217 0.92493 0.99478 0.95052 1.21527 0.93853 0.92276 1.04789 1.96667 1.69044 1.32297 1.97327 1.21270 1.01217 0.90253 1.07964 0.85667 0.92232 0.91499 0.82932 0.83773 0.89246 0.92912 0.90663 0.90330 0.77677 0.92078 0.92701 0.93786 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.21 10.50 -92.36 -0.97 -8.18 16 3 C 0.12 3.18 6.69 22.50 0.15 3.33 16 4 C -0.14 -3.61 9.99 22.37 0.22 -3.39 16 5 C -0.07 -2.07 9.66 22.25 0.21 -1.85 16 6 C -0.10 -3.01 5.10 -19.83 -0.10 -3.11 16 7 C 0.06 1.90 4.14 85.56 0.35 2.25 16 8 N -0.46 -18.89 5.95 -915.64 -5.45 -24.34 16 9 C 0.02 0.83 7.37 86.40 0.64 1.46 16 10 C 0.22 10.97 1.30 -10.90 -0.01 10.96 16 11 O -0.58 -31.19 13.52 -148.98 -2.01 -33.21 16 12 C -0.56 -29.71 8.58 25.60 0.22 -29.49 16 13 H 0.06 3.26 7.84 -2.91 -0.02 3.24 16 14 C 0.03 1.72 5.21 84.65 0.44 2.16 16 15 N -0.91 -48.80 11.79 21.45 0.25 -48.55 16 16 Si 0.96 41.22 29.55 68.60 2.03 43.24 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 C 0.02 0.80 6.91 86.40 0.60 1.39 16 21 C -0.04 -1.33 6.22 22.30 0.14 -1.19 16 22 Br -0.04 -1.16 31.90 -20.37 -0.65 -1.81 16 23 C -0.19 -4.84 8.78 22.38 0.20 -4.64 16 24 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 0.81 7.66 -2.38 -0.02 0.80 16 26 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 27 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 28 H 0.14 3.72 8.00 -2.91 -0.02 3.69 16 29 H 0.09 2.81 7.41 -2.39 -0.02 2.79 16 30 H 0.05 1.71 7.49 -2.39 -0.02 1.69 16 31 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.08 3.08 7.83 -2.39 -0.02 3.07 16 33 H 0.37 20.59 7.19 -74.06 -0.53 20.05 16 34 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 35 H 0.05 2.54 7.64 -2.39 -0.02 2.52 16 36 H 0.04 2.26 8.14 -2.39 -0.02 2.25 16 37 H 0.15 3.23 6.30 -2.91 -0.02 3.21 16 Total: -1.00 -59.91 330.08 -2.07 -61.98 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.56 Total: 31.64 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.17 Total: -20.78 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -5.19 Total: -72.89 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -2.98 Total: -41.38 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -0.65 Total: -1.81 kcal Total: -59.91 -2.07 -61.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348192547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.113 kcal (2) G-P(sol) polarization free energy of solvation -59.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds