Wall clock time and date at job start Sat Apr 11 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35916 * 117.00226 * 2 1 4 4 C 1.38715 * 120.06021 * 359.73125 * 3 2 1 5 5 C 1.38141 * 119.95369 * 180.27544 * 4 3 2 6 6 C 1.38282 * 120.07490 * 359.96910 * 5 4 3 7 7 C 1.50698 * 119.94354 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47169 * 270.02156 * 7 6 5 9 9 C 1.50698 * 109.47550 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99468 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00479 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00277 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47113 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00116 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99747 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00074 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99965 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47183 * 89.99882 * 17 15 13 19 19 H 1.48506 * 109.46792 * 209.99512 * 17 15 13 20 20 H 1.48496 * 109.47366 * 329.99807 * 17 15 13 21 21 C 1.38247 * 120.11551 * 0.04735 * 6 5 4 22 22 C 1.38235 * 120.04531 * 359.95795 * 21 6 5 23 23 Br 1.89099 * 120.03561 * 179.97438 * 22 21 6 24 24 H 1.09001 * 109.46624 * 300.00353 * 1 2 3 25 25 H 1.09001 * 109.46710 * 59.99412 * 1 2 3 26 26 H 1.08993 * 109.47502 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.02260 * 0.24235 * 4 3 2 28 28 H 1.08001 * 119.96418 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.46989 * 30.02065 * 7 6 5 30 30 H 1.08999 * 109.47416 * 150.02566 * 7 6 5 31 31 H 1.08999 * 109.47545 * 300.00469 * 8 7 6 32 32 H 1.09004 * 109.47057 * 59.99764 * 8 7 6 33 33 H 0.97004 * 120.00151 * 359.97438 * 11 9 8 34 34 H 1.09000 * 109.46898 * 299.99716 * 12 11 9 35 35 H 1.08990 * 109.47220 * 59.99868 * 12 11 9 36 36 H 0.97000 * 120.00359 * 179.97438 * 16 15 13 37 37 H 1.07993 * 119.97543 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2919 2.3752 -0.0056 5 6 1.9214 3.6048 -0.0114 6 6 3.3024 3.6764 -0.0109 7 6 3.9860 5.0193 -0.0166 8 6 4.2178 5.4675 -1.4609 9 6 4.9020 6.8102 -1.4667 10 8 5.1767 7.3553 -0.4186 11 7 5.2076 7.4058 -2.6364 12 6 5.8733 8.7109 -2.6419 13 6 6.1014 9.1524 -4.0647 14 1 5.7821 8.5239 -4.8829 15 6 6.7168 10.3591 -4.3217 16 7 6.9164 10.7442 -5.5633 17 14 7.2685 11.4463 -2.9064 18 1 8.6620 11.0987 -2.5292 19 1 7.2092 12.8703 -3.3240 20 1 6.3728 11.2345 -1.7411 21 6 4.0570 2.5180 -0.0056 22 6 3.4321 1.2849 0.0000 23 35 4.4645 -0.2993 0.0065 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2133 2.3203 -0.0061 28 1 1.3344 4.5113 -0.0162 29 1 3.3576 5.7491 0.4939 30 1 4.9439 4.9417 0.4978 31 1 4.8461 4.7378 -1.9715 32 1 3.2599 5.5452 -1.9754 33 1 4.9875 6.9701 -3.4746 34 1 5.2457 9.4410 -2.1308 35 1 6.8313 8.6323 -2.1283 36 1 7.3490 11.5933 -5.7442 37 1 5.1353 2.5765 -0.0056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352693712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:18 Heat of formation + Delta-G solvation = -81.960874 kcal Electronic energy + Delta-G solvation = -20251.959827 eV Core-core repulsion = 16846.507011 eV Total energy + Delta-G solvation = -3405.452816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28048 -40.52869 -38.77941 -36.18025 -34.67877 -34.37362 -33.16122 -30.99895 -30.30402 -29.54350 -28.09673 -25.56934 -23.74019 -23.49334 -21.93370 -21.24104 -19.17300 -19.12187 -17.73975 -17.53808 -17.03245 -16.73484 -16.51355 -16.13152 -15.85394 -15.38597 -15.01289 -14.77558 -14.67097 -14.38835 -14.26544 -14.02244 -13.59832 -13.25993 -12.95632 -12.87020 -12.69036 -12.50542 -12.07400 -12.00633 -11.92796 -11.73788 -11.68226 -11.64381 -11.16468 -10.91646 -10.78299 -9.89706 -9.86283 -9.11326 -8.39632 -6.46608 0.08508 0.27239 0.69841 1.33198 1.35422 1.47818 1.78229 2.26780 2.28373 2.43971 2.65281 2.95805 3.68210 3.77993 3.92972 4.08492 4.14251 4.28063 4.35556 4.40504 4.41932 4.48613 4.68681 4.72815 4.76877 4.85240 4.96594 5.02834 5.06069 5.19405 5.23300 5.28047 5.55319 5.56792 5.65793 6.09439 6.28147 6.54951 6.88115 7.16472 7.45230 8.75111 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.002131 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.408302 B =13138.102896 C =13667.252813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.140 3.860 4 C -0.197 4.197 5 C -0.058 4.058 6 C -0.112 4.112 7 C -0.053 4.053 8 C -0.122 4.122 9 C 0.498 3.502 10 O -0.598 6.598 11 N -0.709 5.709 12 C 0.230 3.770 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.025 3.975 16 N -0.932 5.932 17 Si 0.938 3.062 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.055 4.055 22 C -0.143 4.143 23 Br -0.048 7.048 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.409 0.591 34 H 0.013 0.987 35 H 0.010 0.990 36 H 0.272 0.728 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 -25.725 12.962 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.092 3.908 4 C -0.217 4.217 5 C -0.076 4.076 6 C -0.114 4.114 7 C -0.091 4.091 8 C -0.162 4.162 9 C 0.286 3.714 10 O -0.481 6.481 11 N -0.358 5.358 12 C 0.106 3.894 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.176 4.176 16 N -0.571 5.571 17 Si 0.762 3.238 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.184 1.184 21 C -0.075 4.075 22 C -0.223 4.223 23 Br 0.037 6.963 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.180 0.820 28 H 0.171 0.829 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.244 0.756 34 H 0.031 0.969 35 H 0.028 0.972 36 H 0.081 0.919 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.850 -25.989 13.561 32.422 hybrid contribution 0.099 1.034 -0.239 1.066 sum -13.751 -24.956 13.323 31.454 Atomic orbital electron populations 1.23415 0.75994 1.05781 1.02631 1.86162 1.23716 1.25882 1.87947 1.18807 0.90677 0.85919 0.95373 1.21491 1.01493 0.90885 1.07781 1.21305 0.93672 0.98384 0.94213 1.19751 0.94018 0.94109 1.03484 1.20160 1.01099 0.92584 0.95236 1.21667 1.02880 0.92017 0.99623 1.21504 0.78584 0.88386 0.82898 1.90634 1.56683 1.67788 1.32961 1.46104 1.59557 1.21177 1.08991 1.19082 0.92117 0.82303 0.95865 1.21317 1.40264 1.05410 0.91457 0.92300 1.25627 0.94977 0.98857 0.98102 1.69985 1.43515 1.23048 1.20526 0.85843 0.79710 0.78412 0.79836 1.19078 1.19854 1.18365 1.21001 1.00831 0.89479 0.96200 1.21168 0.91821 0.93108 1.16156 1.96669 1.69547 1.32180 1.97917 0.91258 0.91279 0.86420 0.82010 0.82919 0.90316 0.91146 0.87148 0.86509 0.75552 0.96948 0.97214 0.91873 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.49 9.83 -92.61 -0.91 -6.40 16 3 C 0.14 2.56 6.68 22.52 0.15 2.71 16 4 C -0.20 -2.79 9.04 22.36 0.20 -2.58 16 5 C -0.06 -0.86 9.69 22.26 0.22 -0.65 16 6 C -0.11 -2.05 5.13 -19.85 -0.10 -2.15 16 7 C -0.05 -1.13 4.63 29.85 0.14 -0.99 16 8 C -0.12 -2.74 5.68 29.85 0.17 -2.57 16 9 C 0.50 17.36 7.83 87.66 0.69 18.05 16 10 O -0.60 -25.73 15.98 -3.05 -0.05 -25.78 16 11 N -0.71 -27.44 5.55 -466.80 -2.59 -30.03 16 12 C 0.23 11.19 4.50 85.63 0.38 11.58 16 13 C -0.55 -30.05 9.83 25.60 0.25 -29.80 16 14 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 15 C 0.02 1.39 5.47 84.65 0.46 1.85 16 16 N -0.93 -55.61 13.96 21.45 0.30 -55.32 16 17 Si 0.94 43.96 27.47 68.60 1.88 45.84 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 21 C -0.06 -1.08 9.44 22.27 0.21 -0.87 16 22 C -0.14 -2.92 6.24 22.40 0.14 -2.78 16 23 Br -0.05 -0.98 33.16 -20.37 -0.68 -1.66 16 24 H 0.07 0.38 7.67 -2.39 -0.02 0.36 16 25 H 0.07 0.40 7.65 -2.39 -0.02 0.38 16 26 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.16 1.33 6.30 -2.91 -0.02 1.31 16 28 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 29 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 30 H 0.07 1.67 8.04 -2.39 -0.02 1.65 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.12 2.07 8.14 -2.39 -0.02 2.06 16 33 H 0.41 13.76 8.32 -92.71 -0.77 12.99 16 34 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 35 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -70.73 338.16 2.25 -68.49 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.27 Total: 11.81 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.02 Total: -6.96 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.29 Total: -85.35 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.96 Total: -32.18 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -0.68 Total: -1.66 kcal Total: -70.73 2.25 -68.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352693712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.475 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds