Wall clock time and date at job start Sat Apr 11 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 N 1.46506 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99320 * 263.43579 * 4 3 2 6 6 H 1.07998 * 119.99240 * 188.07206 * 5 4 3 7 7 C 1.38946 * 120.00660 * 8.07855 * 5 4 3 8 8 N 1.31422 * 119.99590 * 26.01672 * 7 5 4 9 9 Si 1.86790 * 120.00290 * 206.02289 * 7 5 4 10 10 H 1.48502 * 109.47414 * 84.97972 * 9 7 5 11 11 H 1.48495 * 109.47362 * 204.98463 * 9 7 5 12 12 H 1.48500 * 109.47056 * 324.98514 * 9 7 5 13 13 C 1.34773 * 120.00043 * 83.43879 * 4 3 2 14 14 O 1.21291 * 119.99494 * 179.97438 * 13 4 3 15 15 C 1.50693 * 120.00253 * 359.97438 * 13 4 3 16 16 C 1.50698 * 109.47208 * 179.97438 * 15 13 4 17 17 C 1.38175 * 120.02131 * 264.72405 * 16 15 13 18 18 C 1.38223 * 120.06610 * 179.71629 * 17 16 15 19 19 C 1.38384 * 120.10184 * 0.56559 * 18 17 16 20 20 Br 1.89105 * 119.98299 * 179.74241 * 19 18 17 21 21 C 1.38212 * 120.03165 * 359.71403 * 19 18 17 22 22 C 1.38719 * 120.01858 * 85.00605 * 16 15 13 23 23 O 1.35907 * 120.04850 * 0.02562 * 22 16 15 24 24 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47072 * 300.00327 * 1 2 3 26 26 H 1.08999 * 109.46617 * 60.00616 * 1 2 3 27 27 H 1.09001 * 109.47072 * 239.99673 * 2 1 3 28 28 H 1.09004 * 109.46995 * 119.99623 * 2 1 3 29 29 H 1.08994 * 109.47684 * 59.99636 * 3 2 1 30 30 H 1.09004 * 109.46837 * 299.99719 * 3 2 1 31 31 H 0.96995 * 119.99693 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47400 * 300.00468 * 15 13 4 33 33 H 1.09004 * 109.47320 * 59.99973 * 15 13 4 34 34 H 1.08001 * 119.96316 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.95096 * 180.27585 * 18 17 16 36 36 H 1.08007 * 120.02756 * 180.02562 * 21 19 18 37 37 H 0.96696 * 113.99756 * 90.00203 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5780 1.1787 6 1 5.2629 1.7090 1.1679 7 6 3.5071 1.5467 2.3878 8 7 2.3628 0.9068 2.4791 9 14 4.2139 2.4143 3.8834 10 1 3.8177 3.8453 3.8589 11 1 3.6910 1.7770 5.1185 12 1 5.6951 2.3105 3.8618 13 6 4.1785 1.3092 -1.1604 14 8 5.3914 1.3097 -1.1609 15 6 3.4245 1.1597 -2.4566 16 6 4.4034 1.0297 -3.5950 17 6 4.7678 2.1454 -4.3242 18 6 5.6700 2.0282 -5.3648 19 6 6.2016 0.7918 -5.6866 20 35 7.4301 0.6342 -7.1155 21 6 5.8356 -0.3279 -4.9636 22 6 4.9346 -0.2110 -3.9153 23 8 4.5726 -1.3106 -3.2032 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.8852 0.8852 3.3231 32 1 2.7982 0.2688 -2.4120 33 1 2.7975 2.0370 -2.6155 34 1 4.3505 3.1106 -4.0781 35 1 5.9570 2.9022 -5.9306 36 1 6.2509 -1.2929 -5.2146 37 1 3.7990 -1.7708 -3.5566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357566627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:22 Heat of formation + Delta-G solvation = -43.780000 kcal Electronic energy + Delta-G solvation = -21900.806131 eV Core-core repulsion = 18497.008962 eV Total energy + Delta-G solvation = -3403.797169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -39.97438 -38.34459 -36.58212 -35.30451 -33.06633 -32.28240 -31.29297 -30.38314 -29.95894 -27.03233 -25.61251 -24.15333 -22.69282 -21.53383 -20.73735 -18.92610 -18.02524 -16.89041 -16.18636 -16.05071 -15.90429 -14.95784 -14.51390 -14.15251 -13.91067 -13.78606 -13.66720 -13.04180 -12.87381 -12.66709 -12.23065 -12.02468 -12.01371 -11.58486 -11.46482 -11.18325 -10.99575 -10.84975 -10.61165 -10.41778 -10.36363 -10.31494 -10.27211 -10.06234 -9.64808 -8.84771 -8.78107 -8.51012 -8.19246 -7.72065 -6.34266 -3.74186 1.15586 1.32541 1.59842 3.17162 3.27428 3.32250 3.57703 3.90499 4.16376 4.30963 4.84425 4.87832 5.03660 5.10269 5.12563 5.41687 5.61052 5.73123 5.79713 5.84897 5.92658 5.99096 6.09162 6.15980 6.23638 6.27997 6.39246 6.59408 6.63497 6.76248 6.80508 6.85604 7.29029 7.49586 7.73940 7.81214 8.11782 8.53782 9.21771 9.46986 10.03053 10.66433 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.002949 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.126102 B = 9493.875691 C =10212.710738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.125 3.875 4 N -0.443 5.443 5 C -0.306 4.306 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.916 3.084 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.451 3.549 14 O -0.583 6.583 15 C -0.094 4.094 16 C -0.051 4.051 17 C -0.091 4.091 18 C -0.100 4.100 19 C -0.083 4.083 20 Br -0.060 7.060 21 C -0.119 4.119 22 C 0.128 3.872 23 O -0.481 6.481 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -0.873 -17.048 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.002 3.998 4 N -0.162 5.162 5 C -0.433 4.433 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.504 5.504 9 Si 0.743 3.257 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.196 1.196 13 C 0.239 3.761 14 O -0.467 6.467 15 C -0.134 4.134 16 C -0.052 4.052 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.163 4.163 20 Br 0.025 6.975 21 C -0.139 4.139 22 C 0.082 3.918 23 O -0.290 6.290 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.433 -0.821 -17.047 17.072 hybrid contribution -0.542 0.182 0.899 1.065 sum -0.109 -0.639 -16.148 16.161 Atomic orbital electron populations 1.21614 0.97334 1.00064 1.00561 1.21901 0.93874 0.98316 1.02284 1.21518 0.80801 0.96843 1.00682 1.43776 1.05183 1.61775 1.05432 1.19699 0.94216 1.47261 0.82162 0.87918 1.25136 0.96524 0.96794 0.98700 1.70113 1.16843 1.36898 1.26542 0.86105 0.79581 0.79710 0.80352 1.20461 1.21185 1.19564 1.19556 0.87863 0.84249 0.84404 1.90543 1.13826 1.55689 1.86650 1.20597 0.96893 1.03560 0.92396 1.20021 0.96982 0.92884 0.95317 1.20921 0.97273 0.98254 0.94590 1.21000 0.97101 0.95784 0.98059 1.21432 1.00765 0.96250 0.97829 1.96653 1.58505 1.98646 1.43736 1.21242 0.99280 0.98405 0.94991 1.18102 0.96036 0.86811 0.90853 1.84984 1.51095 1.39719 1.53231 0.94066 0.92690 0.94492 0.95059 0.88128 0.88012 0.95207 0.92366 0.88968 0.89607 0.84872 0.85065 0.84759 0.76011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.91 37.16 0.37 -1.84 16 2 C -0.13 -2.46 5.67 -26.73 -0.15 -2.62 16 3 C 0.13 2.66 4.35 -4.04 -0.02 2.65 16 4 N -0.44 -11.03 2.64 -114.81 -0.30 -11.34 16 5 C -0.31 -8.41 9.42 -14.93 -0.14 -8.55 16 6 H 0.10 3.04 7.31 -52.49 -0.38 2.66 16 7 C 0.03 0.80 4.88 -17.46 -0.09 0.71 16 8 N -0.86 -21.52 8.70 55.50 0.48 -21.04 16 9 Si 0.92 20.37 29.62 -169.99 -5.04 15.33 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.45 10.87 7.57 -10.99 -0.08 10.78 16 14 O -0.58 -16.40 15.63 5.55 0.09 -16.32 16 15 C -0.09 -1.69 4.16 -29.04 -0.12 -1.81 16 16 C -0.05 -0.85 4.39 -104.47 -0.46 -1.31 16 17 C -0.09 -1.36 9.67 -39.61 -0.38 -1.74 16 18 C -0.10 -1.35 9.78 -39.53 -0.39 -1.73 16 19 C -0.08 -1.16 6.22 -39.54 -0.25 -1.40 16 20 Br -0.06 -0.71 33.70 -68.01 -2.29 -3.00 16 21 C -0.12 -1.74 9.73 -39.41 -0.38 -2.12 16 22 C 0.13 2.09 6.68 -39.22 -0.26 1.83 16 23 O -0.48 -7.67 12.64 -19.45 -0.25 -7.92 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.03 0.58 6.44 -51.93 -0.33 0.25 16 28 H 0.10 2.35 6.40 -51.93 -0.33 2.01 16 29 H 0.10 2.36 5.83 -51.93 -0.30 2.06 16 30 H 0.03 0.55 6.72 -51.93 -0.35 0.20 16 31 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 32 H 0.09 1.52 5.94 -51.93 -0.31 1.21 16 33 H 0.09 1.33 7.33 -51.93 -0.38 0.95 16 34 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.38 3.85 9.06 45.56 0.41 4.27 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -31.49 328.62 -8.35 -39.85 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.65 Total: 6.62 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -2.35 Total: -7.15 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.18 Total: -32.37 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.16 Total: -24.23 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.04 Total: 15.33 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.29 Total: -3.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.49 -8.35 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357566627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.932 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds