Wall clock time and date at job start Sat Apr 11 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 N 1.46506 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99320 * 263.43579 * 4 3 2 6 6 H 1.07998 * 119.99240 * 188.07206 * 5 4 3 7 7 C 1.38946 * 120.00660 * 8.07855 * 5 4 3 8 8 N 1.31422 * 119.99590 * 26.01672 * 7 5 4 9 9 Si 1.86790 * 120.00290 * 206.02289 * 7 5 4 10 10 H 1.48502 * 109.47414 * 84.97972 * 9 7 5 11 11 H 1.48495 * 109.47362 * 204.98463 * 9 7 5 12 12 H 1.48500 * 109.47056 * 324.98514 * 9 7 5 13 13 C 1.34773 * 120.00043 * 83.43879 * 4 3 2 14 14 O 1.21291 * 119.99494 * 179.97438 * 13 4 3 15 15 C 1.50693 * 120.00253 * 359.97438 * 13 4 3 16 16 C 1.50698 * 109.47208 * 179.97438 * 15 13 4 17 17 C 1.38175 * 120.02131 * 264.72405 * 16 15 13 18 18 C 1.38223 * 120.06610 * 179.71629 * 17 16 15 19 19 C 1.38384 * 120.10184 * 0.56559 * 18 17 16 20 20 Br 1.89105 * 119.98299 * 179.74241 * 19 18 17 21 21 C 1.38212 * 120.03165 * 359.71403 * 19 18 17 22 22 C 1.38719 * 120.01858 * 85.00605 * 16 15 13 23 23 O 1.35907 * 120.04850 * 0.02562 * 22 16 15 24 24 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47072 * 300.00327 * 1 2 3 26 26 H 1.08999 * 109.46617 * 60.00616 * 1 2 3 27 27 H 1.09001 * 109.47072 * 239.99673 * 2 1 3 28 28 H 1.09004 * 109.46995 * 119.99623 * 2 1 3 29 29 H 1.08994 * 109.47684 * 59.99636 * 3 2 1 30 30 H 1.09004 * 109.46837 * 299.99719 * 3 2 1 31 31 H 0.96995 * 119.99693 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47400 * 300.00468 * 15 13 4 33 33 H 1.09004 * 109.47320 * 59.99973 * 15 13 4 34 34 H 1.08001 * 119.96316 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.95096 * 180.27585 * 18 17 16 36 36 H 1.08007 * 120.02756 * 180.02562 * 21 19 18 37 37 H 0.96696 * 113.99756 * 90.00203 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5780 1.1787 6 1 5.2629 1.7090 1.1679 7 6 3.5071 1.5467 2.3878 8 7 2.3628 0.9068 2.4791 9 14 4.2139 2.4143 3.8834 10 1 3.8177 3.8453 3.8589 11 1 3.6910 1.7770 5.1185 12 1 5.6951 2.3105 3.8618 13 6 4.1785 1.3092 -1.1604 14 8 5.3914 1.3097 -1.1609 15 6 3.4245 1.1597 -2.4566 16 6 4.4034 1.0297 -3.5950 17 6 4.7678 2.1454 -4.3242 18 6 5.6700 2.0282 -5.3648 19 6 6.2016 0.7918 -5.6866 20 35 7.4301 0.6342 -7.1155 21 6 5.8356 -0.3279 -4.9636 22 6 4.9346 -0.2110 -3.9153 23 8 4.5726 -1.3106 -3.2032 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.8852 0.8852 3.3231 32 1 2.7982 0.2688 -2.4120 33 1 2.7975 2.0370 -2.6155 34 1 4.3505 3.1106 -4.0781 35 1 5.9570 2.9022 -5.9306 36 1 6.2509 -1.2929 -5.2146 37 1 3.7990 -1.7708 -3.5566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357566627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:21 Heat of formation + Delta-G solvation = -63.405384 kcal Electronic energy + Delta-G solvation = -21901.657151 eV Core-core repulsion = 18497.008962 eV Total energy + Delta-G solvation = -3404.648189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25272 -40.02648 -37.73000 -37.14241 -34.49256 -33.84978 -33.08113 -31.55953 -31.08170 -28.48859 -27.19339 -25.89987 -23.81634 -22.82946 -22.27213 -20.61245 -19.20417 -18.79920 -17.95018 -17.24438 -17.10473 -16.41899 -16.11247 -15.83613 -15.58661 -15.25727 -14.95736 -14.46588 -14.21471 -13.87900 -13.71821 -13.69376 -13.23274 -13.12061 -13.01662 -12.67081 -12.52665 -12.43381 -12.13441 -12.03179 -11.89820 -11.66466 -11.47093 -11.30926 -11.28459 -10.71280 -10.31737 -9.84811 -9.62546 -9.47138 -8.29702 -5.78048 0.01087 0.22385 0.54810 1.36848 1.43259 1.52859 2.08868 2.29000 2.47000 3.08879 3.22519 3.24270 3.75778 3.77931 4.04226 4.15598 4.27354 4.36440 4.49865 4.52459 4.61734 4.73821 4.80722 4.86875 4.93377 5.06670 5.13186 5.17439 5.28227 5.42550 5.46407 5.51467 5.67359 5.68788 5.99836 6.13605 6.60085 6.84142 7.25675 7.57922 8.15299 8.67645 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.002949 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.126102 B = 9493.875691 C =10212.710738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.118 4.118 3 C 0.127 3.873 4 N -0.455 5.455 5 C -0.351 4.351 6 H 0.065 0.935 7 C 0.009 3.991 8 N -0.861 5.861 9 Si 0.973 3.027 10 H -0.269 1.269 11 H -0.273 1.273 12 H -0.284 1.284 13 C 0.439 3.561 14 O -0.636 6.636 15 C -0.078 4.078 16 C -0.079 4.079 17 C -0.095 4.095 18 C -0.100 4.100 19 C -0.088 4.088 20 Br -0.039 7.039 21 C -0.127 4.127 22 C 0.115 3.885 23 O -0.503 6.503 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.272 0.728 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -0.416 -18.269 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C 0.004 3.996 4 N -0.173 5.173 5 C -0.479 4.479 6 H 0.083 0.917 7 C -0.194 4.194 8 N -0.499 5.499 9 Si 0.797 3.203 10 H -0.194 1.194 11 H -0.198 1.198 12 H -0.210 1.210 13 C 0.229 3.771 14 O -0.524 6.524 15 C -0.118 4.118 16 C -0.080 4.080 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.167 4.167 20 Br 0.046 6.954 21 C -0.147 4.147 22 C 0.069 3.931 23 O -0.316 6.316 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.008 -0.381 -18.275 18.307 hybrid contribution -0.077 -0.011 1.250 1.253 sum -1.085 -0.391 -17.025 17.064 Atomic orbital electron populations 1.21524 0.94209 1.01405 1.01453 1.21745 0.96485 0.96748 1.00674 1.21607 0.78797 0.98027 1.01195 1.44015 1.06611 1.61581 1.05087 1.19470 0.93187 1.50885 0.84338 0.91711 1.25719 0.97002 0.96425 1.00291 1.70199 1.16836 1.35572 1.27312 0.85276 0.78090 0.79122 0.77765 1.19439 1.19798 1.20974 1.20608 0.87721 0.82724 0.86058 1.90493 1.16374 1.57776 1.87719 1.20456 0.96837 1.05324 0.89188 1.20100 0.98193 0.93878 0.95859 1.21191 0.97296 0.98402 0.94522 1.21303 0.96320 0.96577 0.97720 1.21677 1.00703 0.96216 0.98109 1.96670 1.57631 1.98638 1.42424 1.21391 0.99068 0.99362 0.94866 1.18311 0.96577 0.86855 0.91320 1.84916 1.52568 1.39986 1.54113 0.92548 0.93617 0.91728 0.94214 0.92200 0.90159 0.91808 0.91771 0.87577 0.86914 0.83216 0.82528 0.83634 0.73472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.91 71.98 0.71 -3.05 16 2 C -0.12 -4.52 5.67 30.59 0.17 -4.35 16 3 C 0.13 5.29 4.35 86.38 0.38 5.66 16 4 N -0.46 -23.12 2.64 -635.55 -1.68 -24.80 16 5 C -0.35 -20.08 9.42 84.04 0.79 -19.29 16 6 H 0.06 4.11 7.31 -2.91 -0.02 4.09 16 7 C 0.01 0.47 4.88 84.92 0.41 0.89 16 8 N -0.86 -43.01 8.70 21.66 0.19 -42.82 16 9 Si 0.97 42.24 29.62 68.60 2.03 44.28 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.44 21.53 7.57 87.66 0.66 22.19 16 14 O -0.64 -37.26 15.63 -3.07 -0.05 -37.31 16 15 C -0.08 -2.72 4.16 29.10 0.12 -2.60 16 16 C -0.08 -2.60 4.39 -19.76 -0.09 -2.69 16 17 C -0.10 -2.69 9.67 22.25 0.22 -2.47 16 18 C -0.10 -2.51 9.78 22.30 0.22 -2.29 16 19 C -0.09 -2.30 6.22 22.30 0.14 -2.16 16 20 Br -0.04 -0.84 33.70 -20.37 -0.69 -1.53 16 21 C -0.13 -3.60 9.73 22.38 0.22 -3.38 16 22 C 0.11 3.71 6.68 22.50 0.15 3.86 16 23 O -0.50 -16.00 12.64 -92.51 -1.17 -17.17 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.04 1.43 6.44 -2.39 -0.02 1.41 16 28 H 0.06 2.80 6.40 -2.38 -0.02 2.79 16 29 H 0.08 3.69 5.83 -2.39 -0.01 3.68 16 30 H 0.06 2.20 6.72 -2.38 -0.02 2.18 16 31 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 32 H 0.11 3.32 5.94 -2.39 -0.01 3.30 16 33 H 0.11 3.22 7.33 -2.39 -0.02 3.20 16 34 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.41 7.89 9.06 -74.06 -0.67 7.22 16 Total: -1.00 -70.98 328.62 3.18 -67.80 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.44 Total: 21.23 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 4.11 Total: -9.68 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -1.49 Total: -67.62 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -1.22 Total: -54.48 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -0.69 Total: -1.53 kcal Total: -70.98 3.18 -67.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357566627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.391 kcal (2) G-P(sol) polarization free energy of solvation -70.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds