Wall clock time and date at job start Sat Apr 11 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39927 * 125.74918 * 2 1 4 4 C 1.30418 * 108.94343 * 179.69555 * 3 2 1 5 5 C 1.41323 * 108.04538 * 0.44709 * 4 3 2 6 6 C 1.47331 * 126.43107 * 179.81497 * 5 4 3 7 7 O 1.21615 * 119.99949 * 230.19001 * 6 5 4 8 8 N 1.34774 * 120.00088 * 50.19080 * 6 5 4 9 9 C 1.46927 * 120.63116 * 355.65089 * 8 6 5 10 10 C 1.53191 * 108.89502 * 126.34065 * 9 8 6 11 11 C 1.53356 * 109.14588 * 54.58127 * 10 9 8 12 12 C 1.53039 * 109.60646 * 298.70858 * 11 10 9 13 13 H 1.09005 * 109.49979 * 301.42770 * 12 11 10 14 14 C 1.50694 * 109.49857 * 181.32761 * 12 11 10 15 15 H 1.08004 * 119.99789 * 0.15970 * 14 12 11 16 16 C 1.37873 * 120.00300 * 180.16361 * 14 12 11 17 17 N 1.31511 * 119.99911 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 120.00114 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46713 * 90.00438 * 18 16 14 20 20 H 1.48497 * 109.47163 * 209.99872 * 18 16 14 21 21 H 1.48490 * 109.47010 * 330.00225 * 18 16 14 22 22 C 1.46930 * 120.63194 * 175.67255 * 8 6 5 23 23 C 1.34328 * 125.75319 * 179.97438 * 2 1 3 24 24 Br 1.89101 * 126.31586 * 0.03385 * 23 2 1 25 25 H 1.09000 * 109.47034 * 270.01240 * 1 2 3 26 26 H 1.09001 * 109.47640 * 30.02157 * 1 2 3 27 27 H 1.09008 * 109.46882 * 150.02083 * 1 2 3 28 28 H 1.08005 * 125.97864 * 180.26899 * 4 3 2 29 29 H 1.08999 * 109.58892 * 246.20235 * 9 8 6 30 30 H 1.09007 * 109.58453 * 6.48179 * 9 8 6 31 31 H 1.09001 * 109.49678 * 174.65926 * 10 9 8 32 32 H 1.09005 * 109.49925 * 294.75885 * 10 9 8 33 33 H 1.09006 * 109.41524 * 178.67538 * 11 10 9 34 34 H 1.08997 * 109.42405 * 58.75212 * 11 10 9 35 35 H 0.97002 * 120.00023 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.58596 * 353.37653 * 22 8 6 37 37 H 1.09001 * 109.58450 * 113.80162 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5310 0.7586 0.0066 5 6 3.5616 -0.6543 0.0006 6 6 4.7656 -1.5034 0.0010 7 8 4.8767 -2.4014 -0.8116 8 7 5.7440 -1.2849 0.9018 9 6 5.6688 -0.1462 1.8273 10 6 5.8298 -0.6609 3.2611 11 6 7.1275 -1.4718 3.3617 12 6 7.0555 -2.6752 2.4189 13 1 6.1969 -3.2929 2.6823 14 6 8.3182 -3.4882 2.5437 15 1 9.0937 -3.1794 3.2290 16 6 8.4835 -4.6261 1.7830 17 7 7.5394 -5.0017 0.9480 18 14 10.0490 -5.6335 1.9372 19 1 9.8725 -6.6641 2.9918 20 1 10.3406 -6.2967 0.6409 21 1 11.1782 -4.7407 2.3015 22 6 6.9063 -2.1806 0.9767 23 6 2.2499 -1.0901 0.0005 24 35 1.6677 -2.8893 0.0004 25 1 -0.3633 0.0002 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 4.3911 1.4118 0.0123 29 1 6.4664 0.5616 1.6014 30 1 4.7023 0.3468 1.7223 31 1 5.8706 0.1841 3.9485 32 1 4.9827 -1.2976 3.5164 33 1 7.2584 -1.8205 4.3862 34 1 7.9715 -0.8414 3.0821 35 1 7.6558 -5.8021 0.4125 36 1 6.7554 -3.0314 0.3123 37 1 7.8048 -1.6387 0.6815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397595908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:51 Heat of formation + Delta-G solvation = 49.027277 kcal Electronic energy + Delta-G solvation = -22176.393052 eV Core-core repulsion = 18808.913060 eV Total energy + Delta-G solvation = -3367.479992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49134 -38.98610 -36.52660 -33.91396 -33.16430 -32.07335 -31.63828 -29.88668 -29.23046 -27.35826 -25.00382 -24.69025 -22.03138 -21.85873 -20.97159 -19.66231 -18.44399 -17.23711 -16.27125 -16.12823 -15.64707 -15.15415 -14.59101 -14.51205 -14.17938 -13.61846 -13.38046 -13.31078 -13.00053 -12.76390 -12.62114 -12.50066 -12.02216 -11.81227 -11.34874 -11.27770 -10.95456 -10.87722 -10.46172 -10.43646 -10.34387 -10.18559 -9.84873 -9.47949 -9.31299 -9.09233 -8.86750 -8.59134 -8.38628 -7.66399 -5.95869 -4.04585 0.97980 1.29934 2.24620 2.29914 3.32489 3.40063 3.41411 3.43211 3.88696 4.28129 4.46295 4.79355 4.83440 5.08297 5.09082 5.20365 5.34050 5.39496 5.43635 5.58798 5.76197 6.03815 6.19120 6.25247 6.35371 6.39350 6.64940 6.73367 6.91006 7.02216 7.21125 7.28340 7.35068 7.68816 7.92356 8.04412 8.31782 8.43053 8.92889 9.00683 9.60926 11.09339 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.004244 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.365425 B = 6596.525682 C = 7585.212594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.349 5.349 3 N -0.277 5.277 4 C 0.080 3.920 5 C -0.228 4.228 6 C 0.578 3.422 7 O -0.523 6.523 8 N -0.596 5.596 9 C 0.104 3.896 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.879 5.879 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.115 3.885 23 C 0.110 3.890 24 Br 0.046 6.954 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.198 0.802 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.566 10.867 -0.810 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.132 5.132 3 N -0.099 5.099 4 C -0.107 4.107 5 C -0.245 4.245 6 C 0.363 3.637 7 O -0.399 6.399 8 N -0.328 5.328 9 C -0.020 4.020 10 C -0.171 4.171 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.517 5.517 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.005 4.005 23 C -0.099 4.099 24 Br 0.128 6.872 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.215 0.785 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.709 10.572 -1.398 19.822 hybrid contribution 1.396 -0.770 0.167 1.603 sum -15.313 9.802 -1.231 18.223 Atomic orbital electron populations 1.22067 0.73310 1.05244 1.04277 1.48371 1.07041 1.02201 1.55580 1.77183 1.01984 1.06332 1.24421 1.24063 0.95262 0.93368 0.97960 1.20424 0.92743 0.94248 1.17118 1.17135 0.81566 0.83231 0.81770 1.90816 1.78897 1.32118 1.38054 1.48342 1.22592 1.28683 1.33230 1.21791 1.01186 0.88810 0.90220 1.21991 1.00248 0.99676 0.95228 1.21683 0.94640 0.98016 1.00430 1.18966 0.97667 0.91488 0.89761 0.95308 1.21071 1.02760 1.08461 1.23661 0.92398 1.25039 0.96395 0.97320 0.95175 1.69884 1.32539 1.24592 1.24650 0.86616 0.83730 0.80387 0.77402 1.20745 1.21197 1.19922 1.22311 0.82806 0.92786 1.02613 1.23194 0.92268 0.88608 1.05833 1.96897 1.89007 1.03933 1.97350 0.89802 0.88348 0.89003 0.78506 0.91925 0.90858 0.92306 0.92291 0.93119 0.93160 0.92662 0.85847 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.25 59.85 0.67 1.38 16 2 N -0.35 -4.44 3.98 -65.77 -0.26 -4.70 16 3 N -0.28 -3.74 12.49 30.86 0.39 -3.35 16 4 C 0.08 1.10 9.65 -16.98 -0.16 0.93 16 5 C -0.23 -3.83 5.12 -105.03 -0.54 -4.37 16 6 C 0.58 11.98 7.34 -12.56 -0.09 11.89 16 7 O -0.52 -12.89 16.42 5.26 0.09 -12.80 16 8 N -0.60 -12.08 2.97 -174.07 -0.52 -12.60 16 9 C 0.10 1.64 5.90 -3.71 -0.02 1.62 16 10 C -0.13 -2.18 6.11 -26.45 -0.16 -2.35 16 11 C -0.11 -2.18 5.11 -26.53 -0.14 -2.32 16 12 C 0.04 0.99 2.25 -91.66 -0.21 0.79 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 14 C -0.52 -14.05 8.56 -34.44 -0.29 -14.35 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -25.55 11.39 55.43 0.63 -24.92 16 18 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.11 2.77 5.39 -3.71 -0.02 2.75 16 23 C 0.11 1.68 7.42 -16.47 -0.12 1.56 16 24 Br 0.05 0.67 32.99 -68.01 -2.24 -1.58 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.60 7.63 -51.92 -0.40 0.21 16 28 H 0.20 2.10 7.65 -52.48 -0.40 1.70 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.02 4.56 -51.92 -0.24 0.78 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 3.48 5.14 -51.93 -0.27 3.22 16 37 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -32.61 324.83 -7.87 -40.49 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.65 Total: -0.84 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.18 Total: -0.80 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.24 Total: -45.56 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 35 Polarization: 0.67 SS G_CDS: -2.24 Total: -1.58 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.61 -7.87 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397595908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.513 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds