Wall clock time and date at job start Sat Apr 11 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39927 * 125.74918 * 2 1 4 4 C 1.30418 * 108.94343 * 179.69555 * 3 2 1 5 5 C 1.41323 * 108.04538 * 0.44709 * 4 3 2 6 6 C 1.47331 * 126.43107 * 179.81497 * 5 4 3 7 7 O 1.21615 * 119.99949 * 230.19001 * 6 5 4 8 8 N 1.34774 * 120.00088 * 50.19080 * 6 5 4 9 9 C 1.46927 * 120.63116 * 355.65089 * 8 6 5 10 10 C 1.53191 * 108.89502 * 126.34065 * 9 8 6 11 11 C 1.53356 * 109.14588 * 54.58127 * 10 9 8 12 12 C 1.53039 * 109.60646 * 298.70858 * 11 10 9 13 13 H 1.09005 * 109.49979 * 301.42770 * 12 11 10 14 14 C 1.50694 * 109.49857 * 181.32761 * 12 11 10 15 15 H 1.08004 * 119.99789 * 0.15970 * 14 12 11 16 16 C 1.37873 * 120.00300 * 180.16361 * 14 12 11 17 17 N 1.31511 * 119.99911 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 120.00114 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46713 * 90.00438 * 18 16 14 20 20 H 1.48497 * 109.47163 * 209.99872 * 18 16 14 21 21 H 1.48490 * 109.47010 * 330.00225 * 18 16 14 22 22 C 1.46930 * 120.63194 * 175.67255 * 8 6 5 23 23 C 1.34328 * 125.75319 * 179.97438 * 2 1 3 24 24 Br 1.89101 * 126.31586 * 0.03385 * 23 2 1 25 25 H 1.09000 * 109.47034 * 270.01240 * 1 2 3 26 26 H 1.09001 * 109.47640 * 30.02157 * 1 2 3 27 27 H 1.09008 * 109.46882 * 150.02083 * 1 2 3 28 28 H 1.08005 * 125.97864 * 180.26899 * 4 3 2 29 29 H 1.08999 * 109.58892 * 246.20235 * 9 8 6 30 30 H 1.09007 * 109.58453 * 6.48179 * 9 8 6 31 31 H 1.09001 * 109.49678 * 174.65926 * 10 9 8 32 32 H 1.09005 * 109.49925 * 294.75885 * 10 9 8 33 33 H 1.09006 * 109.41524 * 178.67538 * 11 10 9 34 34 H 1.08997 * 109.42405 * 58.75212 * 11 10 9 35 35 H 0.97002 * 120.00023 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.58596 * 353.37653 * 22 8 6 37 37 H 1.09001 * 109.58450 * 113.80162 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5310 0.7586 0.0066 5 6 3.5616 -0.6543 0.0006 6 6 4.7656 -1.5034 0.0010 7 8 4.8767 -2.4014 -0.8116 8 7 5.7440 -1.2849 0.9018 9 6 5.6688 -0.1462 1.8273 10 6 5.8298 -0.6609 3.2611 11 6 7.1275 -1.4718 3.3617 12 6 7.0555 -2.6752 2.4189 13 1 6.1969 -3.2929 2.6823 14 6 8.3182 -3.4882 2.5437 15 1 9.0937 -3.1794 3.2290 16 6 8.4835 -4.6261 1.7830 17 7 7.5394 -5.0017 0.9480 18 14 10.0490 -5.6335 1.9372 19 1 9.8725 -6.6641 2.9918 20 1 10.3406 -6.2967 0.6409 21 1 11.1782 -4.7407 2.3015 22 6 6.9063 -2.1806 0.9767 23 6 2.2499 -1.0901 0.0005 24 35 1.6677 -2.8893 0.0004 25 1 -0.3633 0.0002 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 4.3911 1.4118 0.0123 29 1 6.4664 0.5616 1.6014 30 1 4.7023 0.3468 1.7223 31 1 5.8706 0.1841 3.9485 32 1 4.9827 -1.2976 3.5164 33 1 7.2584 -1.8205 4.3862 34 1 7.9715 -0.8414 3.0821 35 1 7.6558 -5.8021 0.4125 36 1 6.7554 -3.0314 0.3123 37 1 7.8048 -1.6387 0.6815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397595908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:51 Heat of formation + Delta-G solvation = 27.694736 kcal Electronic energy + Delta-G solvation = -22177.318101 eV Core-core repulsion = 18808.913060 eV Total energy + Delta-G solvation = -3368.405041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.61296 -40.55489 -38.20101 -35.37283 -34.61649 -33.40873 -33.12540 -31.56946 -30.48252 -28.34577 -26.89691 -26.20372 -23.46644 -23.33473 -22.07498 -21.21304 -19.91710 -18.72813 -18.05667 -17.40802 -16.79273 -16.75673 -16.37810 -15.81943 -15.51440 -15.12615 -14.85303 -14.62683 -14.25869 -14.20482 -13.81946 -13.61949 -13.57680 -13.43056 -12.85897 -12.66755 -12.47611 -12.42245 -12.22567 -12.18842 -11.78192 -11.61150 -11.55314 -11.10343 -10.91718 -10.70997 -10.48869 -10.44360 -9.80436 -9.32389 -8.06639 -6.23472 -0.16356 0.14432 1.09279 1.36979 1.43074 1.44302 1.54705 1.90047 2.37824 2.46868 3.21051 3.31547 3.80472 3.83300 4.11248 4.19078 4.25602 4.29919 4.35538 4.43535 4.57740 4.64917 4.79462 4.84586 4.91567 5.13190 5.14060 5.29617 5.31869 5.41840 5.43880 5.59910 5.69315 5.95183 6.04952 6.22384 6.37673 6.70600 6.89163 7.35401 7.46760 8.96697 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.004244 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.365425 B = 6596.525682 C = 7585.212594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.336 5.336 3 N -0.275 5.275 4 C 0.090 3.910 5 C -0.258 4.258 6 C 0.575 3.425 7 O -0.576 6.576 8 N -0.599 5.599 9 C 0.100 3.900 10 C -0.126 4.126 11 C -0.104 4.104 12 C 0.039 3.961 13 H -0.015 1.015 14 C -0.535 4.535 15 H 0.062 0.938 16 C 0.012 3.988 17 N -0.913 5.913 18 Si 0.955 3.045 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.262 1.262 22 C 0.128 3.872 23 C 0.106 3.894 24 Br 0.043 6.957 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.228 0.772 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.147 13.523 0.266 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.118 5.118 3 N -0.097 5.097 4 C -0.096 4.096 5 C -0.276 4.276 6 C 0.363 3.637 7 O -0.456 6.456 8 N -0.330 5.330 9 C -0.022 4.022 10 C -0.164 4.164 11 C -0.142 4.142 12 C 0.020 3.980 13 H 0.003 0.997 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.188 4.188 17 N -0.552 5.552 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.186 1.186 22 C 0.006 3.994 23 C -0.106 4.106 24 Br 0.125 6.875 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.120 0.880 28 H 0.244 0.756 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.320 13.288 -0.282 21.832 hybrid contribution 1.471 -1.583 -0.158 2.166 sum -15.849 11.706 -0.440 19.708 Atomic orbital electron populations 1.22553 0.70454 1.06922 1.06189 1.48775 1.08517 1.01116 1.53426 1.77189 1.01867 1.06407 1.24277 1.24427 0.96257 0.91979 0.96946 1.20110 0.91563 0.95329 1.20558 1.17662 0.82402 0.82869 0.80777 1.90777 1.80029 1.34660 1.40169 1.48332 1.21427 1.29220 1.34040 1.22133 1.03766 0.87591 0.88708 1.21956 0.97431 1.00375 0.96627 1.21569 0.97203 0.96536 0.98893 1.18891 0.94928 0.92854 0.91309 0.99673 1.21506 1.03658 1.08919 1.23287 0.91971 1.25856 0.99374 0.98651 0.94872 1.70084 1.34606 1.24872 1.25646 0.85599 0.80259 0.78919 0.77153 1.20247 1.21437 1.18579 1.21733 0.84253 0.92196 1.01199 1.23232 0.92499 0.89208 1.05621 1.96891 1.88791 1.04496 1.97327 0.87720 0.86143 0.87952 0.75615 0.89212 0.88195 0.87865 0.93756 0.93112 0.92105 0.93175 0.90370 0.94168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 11.25 127.77 1.44 2.40 16 2 N -0.34 -7.71 3.98 -361.99 -1.44 -9.15 16 3 N -0.28 -6.55 12.49 -56.26 -0.70 -7.26 16 4 C 0.09 2.21 9.65 85.66 0.83 3.04 16 5 C -0.26 -8.43 5.12 -20.13 -0.10 -8.53 16 6 C 0.58 24.32 7.34 86.64 0.64 24.96 16 7 O -0.58 -29.91 16.42 -4.08 -0.07 -29.98 16 8 N -0.60 -24.37 2.97 -822.88 -2.45 -26.82 16 9 C 0.10 2.90 5.90 86.36 0.51 3.41 16 10 C -0.13 -3.80 6.11 30.78 0.19 -3.61 16 11 C -0.10 -4.02 5.11 30.73 0.16 -3.86 16 12 C 0.04 1.99 2.25 -11.46 -0.03 1.97 16 13 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 14 C -0.54 -29.47 8.56 25.60 0.22 -29.25 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.01 0.68 5.30 84.65 0.45 1.13 16 17 N -0.91 -55.66 11.39 21.45 0.24 -55.42 16 18 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 22 C 0.13 6.41 5.39 86.36 0.47 6.88 16 23 C 0.11 3.12 7.42 84.31 0.63 3.74 16 24 Br 0.04 1.25 32.99 -20.37 -0.67 0.58 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.09 7.63 -2.38 -0.02 1.07 16 28 H 0.23 3.94 7.65 -2.91 -0.02 3.92 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.10 2.42 4.56 -2.38 -0.01 2.40 16 31 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.08 4.69 5.14 -2.39 -0.01 4.68 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -75.40 324.83 3.41 -71.98 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.09 Total: 7.43 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.38 Total: 2.26 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -4.35 Total: -98.65 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.07 Total: -29.98 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 35 Polarization: 1.25 SS G_CDS: -0.67 Total: 0.58 kcal Total: -75.40 3.41 -71.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397595908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.678 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds