Wall clock time and date at job start Sat Apr 11 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00125 * 2 1 4 4 H 1.48491 * 109.47302 * 270.00005 * 3 2 1 5 5 H 1.48500 * 109.46889 * 30.00326 * 3 2 1 6 6 H 1.48503 * 109.47040 * 149.99770 * 3 2 1 7 7 C 1.37879 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99858 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00046 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99991 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99733 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00156 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00274 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47246 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47246 * 180.02562 * 15 14 13 17 17 C 1.39673 * 120.00107 * 180.02562 * 16 15 14 18 18 C 1.38935 * 120.06913 * 359.97429 * 17 16 15 19 19 C 1.38094 * 119.94359 * 180.02562 * 18 17 16 20 20 C 1.38288 * 120.08492 * 359.97438 * 19 18 17 21 21 C 1.38359 * 120.13771 * 0.04136 * 20 19 18 22 22 Br 1.89108 * 119.96929 * 179.97438 * 21 20 19 23 23 C 1.38214 * 120.05821 * 359.96004 * 21 20 19 24 24 H 0.97005 * 119.99780 * 359.97438 * 1 2 3 25 25 H 1.09010 * 109.46473 * 60.00021 * 9 7 2 26 26 H 1.09002 * 109.47450 * 300.00725 * 9 7 2 27 27 H 0.96994 * 119.99755 * 0.02562 * 10 9 7 28 28 H 0.97003 * 119.99878 * 359.97438 * 13 11 10 29 29 H 1.09002 * 109.47120 * 59.99716 * 14 13 11 30 30 H 1.09004 * 109.46633 * 299.99995 * 14 13 11 31 31 H 1.09002 * 109.47211 * 59.99872 * 15 14 13 32 32 H 1.09004 * 109.47382 * 299.99637 * 15 14 13 33 33 H 0.97003 * 119.99848 * 359.97438 * 16 15 14 34 34 H 1.07996 * 120.02918 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.95800 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.92847 * 180.02562 * 20 19 18 37 37 H 1.07995 * 120.04378 * 180.29889 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0009 12 8 6.1150 -1.8975 -0.0005 13 7 5.7742 -4.0923 -0.0013 14 6 7.2145 -4.3600 -0.0007 15 6 7.4523 -5.8714 -0.0007 16 7 8.8926 -6.1392 0.0005 17 6 9.3581 -7.4560 0.0002 18 6 8.4565 -8.5131 -0.0007 19 6 8.9197 -9.8141 -0.0005 20 6 10.2795 -10.0658 0.0001 21 6 11.1804 -9.0157 0.0014 22 35 13.0388 -9.3655 0.0030 23 6 10.7232 -7.7114 0.0012 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8890 26 1 3.8746 -0.6800 -0.8911 27 1 3.3695 -3.3125 -0.0010 28 1 5.1438 -4.8296 -0.0013 29 1 7.6652 -3.9217 0.8897 30 1 7.6660 -3.9208 -0.8903 31 1 7.0016 -6.3101 -0.8909 32 1 7.0008 -6.3103 0.8891 33 1 9.5230 -5.4019 0.0008 34 1 7.3944 -8.3176 -0.0017 35 1 8.2191 -10.6360 -0.0008 36 1 10.6389 -11.0843 -0.0001 37 1 11.4266 -6.8919 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426443568.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:58 Heat of formation + Delta-G solvation = -2.388215 kcal Electronic energy + Delta-G solvation = -19778.982415 eV Core-core repulsion = 16409.272880 eV Total energy + Delta-G solvation = -3369.709535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94705 -39.40012 -36.72491 -34.59972 -34.10293 -32.48213 -32.36642 -30.92629 -29.44125 -28.30928 -27.02178 -23.77394 -22.81909 -21.92342 -21.48986 -20.37722 -18.37567 -17.90782 -16.70410 -16.36608 -16.02912 -15.95382 -15.66050 -14.68876 -14.58091 -14.41887 -14.15001 -13.84157 -13.75090 -13.73135 -13.18322 -12.70112 -12.38345 -12.03499 -12.03065 -11.98488 -11.44033 -11.31638 -11.01218 -10.78379 -10.64569 -10.36353 -9.99388 -9.71648 -9.49214 -9.14293 -9.01811 -8.78364 -8.09006 -7.88511 -6.23084 -4.25303 0.79473 1.12402 1.26661 2.66306 3.26006 3.32592 3.35469 3.41516 3.47992 3.70518 4.32236 4.38980 4.46570 4.71365 4.77103 4.81868 4.89926 5.04332 5.07057 5.10435 5.12499 5.37960 5.63738 5.65934 5.75370 5.90020 6.06857 6.23118 6.57013 6.68063 6.83989 7.07775 7.17428 7.24738 7.34133 7.48727 8.24207 8.62612 8.77097 9.11602 9.37692 10.88786 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.044106 B = 0.001515 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.681750 B =18472.601295 C =19081.533443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.721 5.721 11 C 0.696 3.304 12 O -0.602 6.602 13 N -0.753 5.753 14 C 0.132 3.868 15 C 0.114 3.886 16 N -0.740 5.740 17 C 0.227 3.773 18 C -0.183 4.183 19 C -0.065 4.065 20 C -0.154 4.154 21 C -0.040 4.040 22 Br -0.056 7.056 23 C -0.170 4.170 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.019 0.981 27 H 0.393 0.607 28 H 0.395 0.605 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.405 0.595 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.265 -24.113 0.024 34.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.373 5.373 11 C 0.396 3.604 12 O -0.481 6.481 13 N -0.412 5.412 14 C 0.007 3.993 15 C -0.012 4.012 16 N -0.369 5.369 17 C 0.122 3.878 18 C -0.206 4.206 19 C -0.084 4.084 20 C -0.176 4.176 21 C -0.120 4.120 22 Br 0.029 6.971 23 C -0.195 4.195 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.226 0.774 28 H 0.229 0.771 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.240 0.760 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 25.282 -23.174 0.028 34.296 hybrid contribution -0.476 0.564 -0.026 0.738 sum 24.806 -22.610 0.002 33.564 Atomic orbital electron populations 1.69881 1.06208 1.27446 1.49430 1.24785 0.94795 0.99178 0.93865 0.86809 0.80586 0.83180 0.79071 1.19838 1.20905 1.18458 1.21087 0.88517 0.95217 1.53341 0.90270 1.19382 0.94877 0.77508 0.96704 1.45390 1.03587 1.11176 1.77122 1.16051 0.83661 0.82427 0.78280 1.90876 1.55409 1.43107 1.58747 1.44855 1.06745 1.06966 1.82597 1.21048 0.82024 0.93303 1.02962 1.21474 0.81688 0.95879 1.02110 1.44447 1.06396 1.04161 1.81944 1.17656 0.91885 0.84988 0.93302 1.20833 0.99416 0.91846 1.08532 1.20919 0.94824 0.96340 0.96345 1.20863 0.92732 0.98123 1.05904 1.21448 0.90089 0.95416 1.05074 1.96723 1.06778 1.95966 1.97624 1.20473 0.93931 0.95686 1.09385 0.92245 0.95856 0.96306 0.77371 0.77149 0.91254 0.91243 0.91289 0.91290 0.75999 0.85364 0.85156 0.85439 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.54 -14.76 9.83 -34.44 -0.34 -15.10 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.81 16 9 C 0.24 5.82 4.50 -5.19 -0.02 5.80 16 10 N -0.72 -14.33 5.55 -66.41 -0.37 -14.69 16 11 C 0.70 13.09 8.57 -86.92 -0.74 12.34 16 12 O -0.60 -13.83 16.34 5.29 0.09 -13.75 16 13 N -0.75 -9.58 5.56 -65.23 -0.36 -9.95 16 14 C 0.13 1.38 5.79 -4.04 -0.02 1.36 16 15 C 0.11 0.83 5.03 -4.04 -0.02 0.81 16 16 N -0.74 -5.47 5.73 -58.64 -0.34 -5.81 16 17 C 0.23 1.86 6.65 -83.79 -0.56 1.30 16 18 C -0.18 -1.39 9.31 -39.38 -0.37 -1.76 16 19 C -0.06 -0.45 10.04 -39.62 -0.40 -0.85 16 20 C -0.15 -1.18 9.78 -39.52 -0.39 -1.57 16 21 C -0.04 -0.34 6.22 -39.55 -0.25 -0.59 16 22 Br -0.06 -0.45 33.70 -68.01 -2.29 -2.74 16 23 C -0.17 -1.42 9.64 -39.35 -0.38 -1.80 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.61 7.20 -51.92 -0.37 0.23 16 26 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 27 H 0.39 6.74 8.33 -40.82 -0.34 6.40 16 28 H 0.40 3.78 8.49 -40.82 -0.35 3.43 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 32 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 33 H 0.40 2.65 8.49 -40.82 -0.35 2.30 16 34 H 0.13 0.81 6.73 -52.49 -0.35 0.45 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -33.03 339.20 -10.31 -43.34 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.67 Total: 5.30 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.58 Total: 2.03 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.29 Total: -55.94 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.29 Total: -2.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.03 -10.31 -43.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426443568.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.956 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds