Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99969 * 2 1 4 4 H 1.48504 * 109.46836 * 269.99915 * 3 2 1 5 5 H 1.48499 * 109.47140 * 29.99830 * 3 2 1 6 6 H 1.48498 * 109.46948 * 149.99781 * 3 2 1 7 7 C 1.38729 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99367 * 180.02562 * 7 2 1 9 9 S 1.76193 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.76199 * 100.00043 * 185.11764 * 9 7 2 11 11 C 1.39222 * 120.02223 * 265.49096 * 10 9 7 12 12 C 1.38132 * 120.20489 * 180.02562 * 11 10 9 13 13 C 1.38082 * 120.24562 * 0.02562 * 12 11 10 14 14 C 1.39635 * 120.03440 * 0.02562 * 13 12 11 15 15 C 1.47861 * 120.09771 * 180.27640 * 14 13 12 16 16 O 1.21554 * 120.00291 * 179.72053 * 15 14 13 17 17 N 1.34775 * 120.00192 * 359.71686 * 15 14 13 18 18 C 1.46500 * 120.00370 * 180.02562 * 17 15 14 19 19 H 1.09004 * 109.63892 * 325.43314 * 18 17 15 20 20 C 1.53874 * 109.65242 * 205.00077 * 18 17 15 21 21 C 1.55040 * 106.62648 * 192.96575 * 20 18 17 22 22 S 1.83287 * 102.56576 * 42.43528 * 21 20 18 23 23 O 1.42103 * 109.35806 * 90.18711 * 22 21 20 24 24 O 1.42101 * 109.35587 * 223.38490 * 22 21 20 25 25 C 1.54170 * 109.64459 * 85.72379 * 18 17 15 26 26 C 1.38840 * 120.02186 * 85.50914 * 10 9 7 27 27 H 0.96999 * 120.00035 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.90020 * 0.04203 * 11 10 9 29 29 H 1.08003 * 119.88035 * 179.97438 * 12 11 10 30 30 H 1.08000 * 119.98178 * 179.97438 * 13 12 11 31 31 H 0.96997 * 120.00326 * 0.02562 * 17 15 14 32 32 H 1.09005 * 110.02371 * 312.26061 * 20 18 17 33 33 H 1.08997 * 110.02599 * 73.62397 * 20 18 17 34 34 H 1.09001 * 110.79101 * 160.70155 * 21 20 18 35 35 H 1.08996 * 110.79297 * 283.97528 * 21 20 18 36 36 H 1.08998 * 110.31900 * 266.66228 * 25 18 17 37 37 H 1.08996 * 110.31905 * 28.86519 * 25 18 17 38 38 H 1.07998 * 120.11821 * 359.95899 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0099 -1.2014 0.0005 8 1 3.0899 -1.2013 0.0010 9 16 1.1289 -2.7273 0.0005 10 6 2.4726 -3.8564 0.1561 11 6 3.0362 -4.4293 -0.9807 12 6 4.0894 -5.3153 -0.8631 13 6 4.5899 -5.6394 0.3823 14 6 4.0316 -5.0716 1.5293 15 6 4.5705 -5.4128 2.8632 16 8 4.0865 -4.9137 3.8603 17 7 5.5984 -6.2775 2.9738 18 6 6.1320 -6.6161 4.2954 19 1 6.0753 -5.7446 4.9477 20 6 7.5969 -7.0679 4.1619 21 6 7.9861 -7.7168 5.5151 22 16 6.5048 -8.7183 5.9178 23 8 6.6549 -10.0217 5.3719 24 8 6.1871 -8.5572 7.2934 25 6 5.3122 -7.7706 4.9052 26 6 2.9697 -4.1757 1.4125 27 1 -0.4850 0.8400 0.0004 28 1 2.6490 -4.1800 -1.9577 29 1 4.5224 -5.7570 -1.7485 30 1 5.4132 -6.3329 0.4693 31 1 5.9850 -6.6757 2.1782 32 1 7.6906 -7.7973 3.3573 33 1 8.2360 -6.2079 3.9619 34 1 8.8638 -8.3529 5.4009 35 1 8.1591 -6.9541 6.2744 36 1 4.5123 -7.3769 5.5322 37 1 4.9009 -8.4005 4.1164 38 1 2.5347 -3.7326 2.2961 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429940921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -79.999451 kcal Electronic energy + Delta-G solvation = -23896.148639 eV Core-core repulsion = 20150.005140 eV Total energy + Delta-G solvation = -3746.143499 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.32417 -38.27057 -37.46583 -36.96966 -36.39341 -33.47989 -32.55350 -31.08588 -30.63309 -29.68239 -25.83781 -25.61722 -23.71839 -22.48920 -21.66781 -20.63523 -19.26834 -18.50522 -17.58847 -17.37906 -17.07446 -16.25997 -16.08190 -15.67273 -15.19366 -15.15003 -14.89343 -14.57677 -14.53133 -14.23166 -13.92668 -13.50806 -13.18235 -13.01657 -12.87407 -12.68214 -12.56806 -12.42421 -12.34127 -11.83940 -11.66377 -11.28253 -11.23065 -11.19948 -11.12629 -10.90245 -10.76202 -10.08588 -9.91271 -9.51827 -9.21350 -9.09036 -8.70266 -8.10597 -6.76901 -6.33134 -4.07691 -0.43939 1.03249 1.57059 2.03048 2.75716 2.86011 3.13919 3.16002 3.18588 3.24624 3.40303 3.58798 3.79659 3.94041 4.00304 4.09963 4.20663 4.29265 4.42912 4.67252 4.88709 4.96538 5.02991 5.03677 5.10801 5.13278 5.30408 5.40854 5.42102 5.63960 5.77516 5.87279 6.03537 6.15297 6.46487 6.53946 6.83919 7.08178 7.23654 7.52784 8.06248 8.27758 9.12676 10.73629 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.002310 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.708850 B =12116.508874 C =12580.977336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.521 4.521 8 H 0.076 0.924 9 S -0.034 6.034 10 C -0.106 4.106 11 C -0.053 4.053 12 C -0.141 4.141 13 C -0.090 4.090 14 C -0.157 4.157 15 C 0.567 3.433 16 O -0.527 6.527 17 N -0.724 5.724 18 C 0.155 3.845 19 H 0.113 0.887 20 C -0.130 4.130 21 C -0.586 4.586 22 S 2.394 3.606 23 O -0.935 6.935 24 O -0.935 6.935 25 C -0.611 4.611 26 C -0.017 4.017 27 H 0.270 0.730 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.403 0.597 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.090 -16.224 4.986 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.668 4.668 8 H 0.094 0.906 9 S 0.201 5.799 10 C -0.217 4.217 11 C -0.074 4.074 12 C -0.160 4.160 13 C -0.109 4.109 14 C -0.162 4.162 15 C 0.356 3.644 16 O -0.403 6.403 17 N -0.378 5.378 18 C 0.048 3.952 19 H 0.131 0.869 20 C -0.169 4.169 21 C -0.716 4.716 22 S 2.576 3.424 23 O -0.932 6.932 24 O -0.932 6.932 25 C -0.741 4.741 26 C -0.039 4.039 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.240 0.760 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.253 -16.688 6.218 23.448 hybrid contribution 2.149 1.667 -0.823 2.841 sum 17.401 -15.021 5.395 23.612 Atomic orbital electron populations 1.69982 1.05918 1.27750 1.46828 1.25009 0.95131 0.99145 0.94287 0.86114 0.79509 0.81205 0.78448 1.20143 1.20616 1.19571 1.22824 0.94847 0.90142 1.58989 0.90619 1.83644 1.04165 0.97160 1.94980 1.22880 1.02933 1.02048 0.93807 1.21995 0.93186 0.93299 0.98934 1.21069 0.98182 0.99830 0.96953 1.21130 0.98756 0.98707 0.92313 1.19788 1.01000 1.03594 0.91822 1.18474 0.78863 0.77643 0.89386 1.90789 1.58719 1.52277 1.38525 1.45843 1.36238 1.47652 1.08070 1.21245 0.89969 0.97195 0.86787 0.86908 1.22465 0.95077 1.03592 0.95723 1.30598 1.19660 1.15146 1.06185 1.08968 0.79875 0.77176 0.76396 1.93634 1.85065 1.34046 1.80446 1.93636 1.82475 1.87099 1.29946 1.31098 1.15425 1.11771 1.15842 1.21969 0.91836 0.91853 0.98259 0.91994 0.84982 0.85761 0.86464 0.76048 0.88735 0.87429 0.83957 0.83934 0.83447 0.83894 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.10 13.22 55.49 0.73 -24.36 16 2 C 0.07 2.03 5.49 -17.46 -0.10 1.93 16 3 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.52 -14.38 9.46 30.91 0.29 -14.09 16 8 H 0.08 2.07 7.79 -52.49 -0.41 1.66 16 9 S -0.03 -0.86 21.41 -107.50 -2.30 -3.16 16 10 C -0.11 -2.17 5.45 -38.99 -0.21 -2.38 16 11 C -0.05 -0.90 9.79 -39.25 -0.38 -1.28 16 12 C -0.14 -1.84 10.02 -39.68 -0.40 -2.24 16 13 C -0.09 -1.09 9.54 -39.12 -0.37 -1.46 16 14 C -0.16 -2.40 5.87 -105.00 -0.62 -3.02 16 15 C 0.57 7.97 7.75 -12.32 -0.10 7.87 16 16 O -0.53 -9.33 16.00 5.32 0.09 -9.25 16 17 N -0.72 -6.38 5.00 -53.71 -0.27 -6.65 16 18 C 0.16 1.08 2.88 -66.86 -0.19 0.89 16 19 H 0.11 0.90 7.57 -51.93 -0.39 0.51 16 20 C -0.13 -0.46 5.98 -25.20 -0.15 -0.61 16 21 C -0.59 -1.92 7.31 38.24 0.28 -1.64 16 22 S 2.39 15.92 6.11 -107.50 -0.66 15.27 16 23 O -0.93 -9.28 18.15 -57.71 -1.05 -10.33 16 24 O -0.93 -10.03 18.15 -57.71 -1.05 -11.08 16 25 C -0.61 -4.17 6.91 37.77 0.26 -3.91 16 26 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.13 2.13 8.06 -52.48 -0.42 1.71 16 29 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.12 0.89 6.40 -52.49 -0.34 0.56 16 31 H 0.40 2.34 6.62 -40.82 -0.27 2.06 16 32 H 0.09 0.18 8.12 -51.93 -0.42 -0.24 16 33 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.14 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.15 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.14 0.87 8.07 -51.93 -0.42 0.46 16 38 H 0.14 2.93 7.65 -52.49 -0.40 2.52 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -38.38 353.92 -10.56 -48.94 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.32 Total: -0.11 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.05 Total: -20.65 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.46 Total: -31.01 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -2.01 Total: -30.66 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 15.07 SS G_CDS: -2.96 Total: 12.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.38 -10.56 -48.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429940921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.058 kcal (2) G-P(sol) polarization free energy of solvation -38.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds