Wall clock time and date at job start Sat Apr 11 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47427 * 2 1 4 4 C 1.36940 * 119.99477 * 275.96644 * 3 2 1 5 5 H 1.08001 * 119.99310 * 146.59499 * 4 3 2 6 6 C 1.38813 * 120.00226 * 326.58820 * 4 3 2 7 7 N 1.31615 * 120.00059 * 336.12047 * 6 4 3 8 8 Si 1.86803 * 119.99751 * 156.11645 * 6 4 3 9 9 H 1.48503 * 109.46914 * 60.00106 * 8 6 4 10 10 H 1.48502 * 109.46842 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46947 * 300.00082 * 8 6 4 12 12 S 1.65602 * 120.00044 * 95.96639 * 3 2 1 13 13 O 1.42098 * 106.39943 * 156.46233 * 12 3 2 14 14 O 1.42092 * 106.40069 * 23.53975 * 12 3 2 15 15 C 1.76196 * 107.21522 * 269.99937 * 12 3 2 16 16 C 1.38266 * 119.98705 * 90.00175 * 15 12 3 17 17 C 1.38228 * 120.05349 * 180.29305 * 16 15 12 18 18 C 1.38223 * 120.02165 * 359.45145 * 17 16 15 19 19 C 1.50695 * 120.01161 * 180.27274 * 18 17 16 20 20 F 1.39906 * 109.47559 * 0.27556 * 19 18 17 21 21 F 1.39901 * 109.47432 * 120.28022 * 19 18 17 22 22 F 1.39905 * 109.47211 * 240.27696 * 19 18 17 23 23 C 1.38435 * 119.97504 * 0.54869 * 18 17 16 24 24 F 1.35103 * 120.02928 * 179.70042 * 23 18 17 25 25 C 1.38174 * 119.98928 * 270.02391 * 15 12 3 26 26 H 1.08999 * 109.46986 * 300.00463 * 1 2 3 27 27 H 1.08999 * 109.46554 * 59.99931 * 1 2 3 28 28 H 1.08994 * 109.47429 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47497 * 239.99618 * 2 1 3 30 30 H 1.09003 * 109.46955 * 119.99786 * 2 1 3 31 31 H 0.96996 * 119.99720 * 179.97438 * 7 6 4 32 32 H 1.08000 * 119.97279 * 0.02562 * 16 15 12 33 33 H 1.07997 * 119.99149 * 179.70517 * 17 16 15 34 34 H 1.08006 * 120.01363 * 359.95722 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1304 2.0678 -1.1796 5 1 1.9554 3.1332 -1.2028 6 6 2.4690 1.3943 -2.3452 7 7 3.1248 0.2550 -2.2802 8 14 1.9937 2.1050 -4.0061 9 1 2.6190 3.4420 -4.1697 10 1 2.4672 1.2011 -5.0850 11 1 0.5165 2.2364 -4.0838 12 16 2.4350 2.1122 1.4264 13 8 3.3460 3.1508 1.0938 14 8 2.7468 1.0668 2.3368 15 6 0.9880 2.9004 2.0505 16 6 0.1335 2.2111 2.8908 17 6 -1.0052 2.8261 3.3764 18 6 -1.2849 4.1350 3.0313 19 6 -2.5232 4.8073 3.5657 20 9 -3.2210 3.9149 4.3867 21 9 -2.1579 5.9356 4.3079 22 9 -3.3404 5.1957 2.4987 23 6 -0.4300 4.8263 2.1900 24 9 -0.7055 6.1037 1.8471 25 6 0.7075 4.2071 1.6996 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.3611 -0.2157 -3.0947 32 1 0.3536 1.1898 3.1646 33 1 -1.6745 2.2852 4.0289 34 1 1.3754 4.7455 1.0434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447822348.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:14 Heat of formation + Delta-G solvation = -229.889497 kcal Electronic energy + Delta-G solvation = -28548.953942 eV Core-core repulsion = 23688.240807 eV Total energy + Delta-G solvation = -4860.713135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.44123 -49.20256 -47.89187 -47.83580 -39.26210 -36.36042 -36.02482 -34.88449 -32.50530 -31.81192 -30.92336 -29.35843 -26.51708 -24.75430 -23.32750 -22.68220 -21.74338 -19.18008 -18.73404 -18.72250 -18.66595 -18.04537 -16.90475 -16.62365 -16.33253 -16.04917 -15.88721 -14.86686 -14.83313 -14.69311 -14.58697 -14.48839 -14.28011 -14.06106 -14.00138 -13.79448 -13.57575 -13.32844 -12.97538 -12.82125 -12.48776 -12.12838 -12.00527 -11.94949 -11.40318 -11.19296 -11.10878 -11.05300 -10.94026 -10.55191 -10.50932 -10.29325 -10.02082 -9.75273 -9.19894 -9.07173 -7.87984 -6.40767 -4.08353 0.20324 0.87246 1.21423 2.33010 2.90895 3.15294 3.20759 3.23526 3.36785 3.63222 3.86151 3.98342 4.13201 4.28884 4.39011 4.55577 4.78470 4.89525 5.02806 5.13493 5.32630 5.47093 5.64753 5.73972 5.92720 5.99247 6.15985 6.24762 6.42776 6.46085 6.81709 7.16948 7.28488 7.65467 8.27777 8.84433 9.22225 10.60098 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.004201 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.176928 B = 6663.197862 C = 7140.745718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.836 5.836 4 C -0.281 4.281 5 H 0.094 0.906 6 C 0.041 3.959 7 N -0.849 5.849 8 Si 0.917 3.083 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.273 1.273 12 S 2.613 3.387 13 O -0.963 6.963 14 O -0.988 6.988 15 C -0.593 4.593 16 C -0.038 4.038 17 C -0.069 4.069 18 C -0.188 4.188 19 C 0.513 3.487 20 F -0.173 7.173 21 F -0.172 7.172 22 F -0.170 7.170 23 C 0.128 3.872 24 F -0.123 7.123 25 C -0.053 4.053 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.271 0.729 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 3.354 7.944 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.668 5.668 4 C -0.418 4.418 5 H 0.111 0.889 6 C -0.168 4.168 7 N -0.489 5.489 8 Si 0.743 3.257 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.198 1.198 12 S 2.709 3.291 13 O -0.953 6.953 14 O -0.977 6.977 15 C -0.673 4.673 16 C -0.057 4.057 17 C -0.087 4.087 18 C -0.191 4.191 19 C 0.459 3.541 20 F -0.154 7.154 21 F -0.153 7.153 22 F -0.152 7.152 23 C 0.107 3.893 24 F -0.101 7.101 25 C -0.072 4.072 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.175 0.825 33 H 0.171 0.829 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.467 3.357 8.435 13.117 hybrid contribution -1.234 0.942 -0.704 1.704 sum -10.701 4.299 7.732 13.884 Atomic orbital electron populations 1.22212 0.98545 1.00260 1.01328 1.21439 0.91728 0.83535 1.05012 1.52675 1.76205 1.20843 1.17114 1.19137 1.44941 0.94246 0.83516 0.88873 1.25369 0.94823 0.96820 0.99789 1.69951 1.33004 1.16487 1.29410 0.86150 0.79229 0.79167 0.81121 1.19525 1.20795 1.19809 1.06038 0.73616 0.74226 0.75243 1.93459 1.58686 1.59712 1.83412 1.93428 1.82092 1.55261 1.66964 1.32035 1.23535 1.04361 1.07392 1.21035 0.91444 1.00473 0.92736 1.21030 0.97531 0.91778 0.98399 1.20248 0.96511 0.97713 1.04606 1.18043 0.83482 0.76757 0.75861 1.93177 1.80805 1.67961 1.73442 1.93240 1.91558 1.52962 1.77545 1.93251 1.74600 1.91348 1.55962 1.17306 0.95264 0.79750 0.96936 1.91576 1.93372 1.34770 1.90406 1.20985 0.94770 0.93872 0.97596 0.94523 0.92086 0.93134 0.86523 0.92004 0.91901 0.82542 0.82908 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 10.20 37.16 0.38 -2.39 16 2 C 0.11 2.25 6.01 -4.04 -0.02 2.22 16 3 N -0.84 -18.64 2.85 -59.90 -0.17 -18.81 16 4 C -0.28 -6.71 8.87 -15.06 -0.13 -6.85 16 5 H 0.09 2.14 7.94 -52.49 -0.42 1.73 16 6 C 0.04 0.98 4.98 -17.43 -0.09 0.89 16 7 N -0.85 -21.24 11.27 55.49 0.63 -20.61 16 8 Si 0.92 18.79 29.62 -169.99 -5.03 13.76 16 9 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 12 S 2.61 54.98 5.65 -107.50 -0.61 54.37 16 13 O -0.96 -22.94 16.50 -57.17 -0.94 -23.88 16 14 O -0.99 -21.75 15.83 -57.17 -0.90 -22.66 16 15 C -0.59 -10.07 5.97 -39.59 -0.24 -10.31 16 16 C -0.04 -0.54 8.52 -39.57 -0.34 -0.88 16 17 C -0.07 -0.84 9.43 -39.59 -0.37 -1.22 16 18 C -0.19 -2.55 5.38 -104.56 -0.56 -3.11 16 19 C 0.51 6.47 3.03 36.00 0.11 6.58 16 20 F -0.17 -1.96 15.97 2.25 0.04 -1.92 16 21 F -0.17 -2.23 17.06 2.25 0.04 -2.19 16 22 F -0.17 -2.26 17.05 2.25 0.04 -2.22 16 23 C 0.13 1.92 7.13 -39.42 -0.28 1.64 16 24 F -0.12 -1.84 16.47 2.25 0.04 -1.80 16 25 C -0.05 -0.86 9.50 -39.51 -0.38 -1.23 16 26 H 0.04 0.55 7.11 -51.93 -0.37 0.18 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.12 2.64 5.31 -51.93 -0.28 2.36 16 30 H 0.06 1.22 6.90 -51.93 -0.36 0.86 16 31 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 32 H 0.16 1.98 7.62 -52.49 -0.40 1.58 16 33 H 0.15 1.40 7.16 -52.49 -0.38 1.02 16 34 H 0.16 2.60 7.62 -52.48 -0.40 2.20 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -27.90 322.85 -6.52 -34.42 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -2.57 Total: 1.36 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -1.92 Total: -14.66 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.45 Total: -39.42 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.85 Total: -46.54 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 0.15 Total: -8.14 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.61 Total: 54.37 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.90 -6.52 -34.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447822348.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.467 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds