Wall clock time and date at job start Sat Apr 11 2020 06:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46993 * 2 1 4 4 C 1.50702 * 109.47361 * 240.00581 * 2 1 3 5 5 H 1.08001 * 119.99582 * 240.00127 * 4 2 1 6 6 C 1.37876 * 120.00240 * 59.99433 * 4 2 1 7 7 N 1.31509 * 119.99888 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00012 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47269 * 89.99846 * 8 6 4 10 10 H 1.48497 * 109.47214 * 210.00034 * 8 6 4 11 11 H 1.48500 * 109.47116 * 330.00219 * 8 6 4 12 12 N 1.46504 * 109.47444 * 119.99953 * 2 1 3 13 13 S 1.65596 * 120.00079 * 265.00041 * 12 2 1 14 14 O 1.42092 * 106.40438 * 311.46241 * 13 12 2 15 15 O 1.42093 * 106.40240 * 178.53737 * 13 12 2 16 16 C 1.76203 * 107.21680 * 64.99981 * 13 12 2 17 17 C 1.38262 * 119.98756 * 270.02507 * 16 13 12 18 18 C 1.38229 * 120.05298 * 179.97438 * 17 16 13 19 19 C 1.38228 * 120.02156 * 359.71232 * 18 17 16 20 20 C 1.50699 * 120.00852 * 180.29817 * 19 18 17 21 21 F 1.39897 * 109.47806 * 0.26056 * 20 19 18 22 22 F 1.39900 * 109.46688 * 120.26341 * 20 19 18 23 23 F 1.39902 * 109.47011 * 240.25901 * 20 19 18 24 24 C 1.38437 * 119.97183 * 0.56083 * 19 18 17 25 25 F 1.35104 * 120.02166 * 179.71603 * 24 19 18 26 26 C 1.38177 * 119.98565 * 89.99613 * 16 13 12 27 27 H 1.09008 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47036 * 299.99693 * 1 2 3 29 29 H 1.09005 * 109.47354 * 60.00200 * 1 2 3 30 30 H 0.96995 * 119.99950 * 180.02562 * 7 6 4 31 31 H 0.96998 * 119.99533 * 84.99976 * 12 2 1 32 32 H 1.08001 * 119.97715 * 359.97438 * 17 16 13 33 33 H 1.07993 * 119.98967 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.01639 * 0.02562 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1616 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1962 13 16 2.4122 0.1772 2.5505 14 8 3.2436 1.2443 2.1156 15 8 2.8124 -0.7697 3.5314 16 6 0.9275 0.9147 3.1474 17 6 0.5515 2.1687 2.7028 18 6 -0.6133 2.7483 3.1698 19 6 -1.4065 2.0720 4.0776 20 6 -2.6798 2.7014 4.5814 21 9 -2.8464 3.9569 3.9873 22 9 -3.7659 1.8826 4.2540 23 9 -2.6090 2.8487 5.9709 24 6 -1.0281 0.8188 4.5278 25 9 -1.7998 0.1594 5.4194 26 6 0.1391 0.2393 4.0593 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7088 1.1614 -3.4843 31 1 2.1110 -1.6562 1.1948 32 1 1.1683 2.6958 1.9900 33 1 -0.9062 3.7276 2.8215 34 1 0.4329 -0.7402 4.4065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447822830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:16 Heat of formation + Delta-G solvation = -242.620567 kcal Electronic energy + Delta-G solvation = -28157.984431 eV Core-core repulsion = 23296.719235 eV Total energy + Delta-G solvation = -4861.265196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.49567 -49.34013 -47.93704 -47.89091 -39.44703 -36.98589 -35.63469 -35.56947 -32.69417 -32.31607 -31.07648 -28.48388 -26.67369 -25.35506 -23.49842 -22.82422 -21.11971 -19.55344 -18.90786 -18.78792 -18.75345 -18.07222 -17.46640 -16.76285 -16.31503 -16.10516 -15.98121 -15.34771 -14.92605 -14.83481 -14.74446 -14.67262 -14.32263 -14.15632 -14.04538 -13.90617 -13.64082 -13.52819 -13.04310 -12.83729 -12.34854 -12.24378 -12.16223 -11.92160 -11.81030 -11.70338 -11.30857 -11.07851 -10.93348 -10.72526 -10.48746 -10.21376 -10.00702 -9.37268 -9.20024 -8.78642 -8.45128 -6.23493 -4.30877 0.01044 0.69696 0.72905 2.25387 2.72900 3.20545 3.28105 3.28961 3.30894 3.44493 3.54714 3.74883 3.99881 4.07281 4.21620 4.28407 4.64888 4.75423 4.88679 5.09056 5.11079 5.26405 5.50048 5.61250 5.71036 6.13381 6.26949 6.59634 6.64173 6.83698 7.41102 7.52318 7.68769 7.86619 8.11875 8.71447 9.35841 10.82786 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.003777 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.913845 B = 7412.143538 C = 8390.788660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.266 3.734 3 H 0.053 0.947 4 C -0.523 4.523 5 H 0.066 0.934 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 N -1.092 6.092 13 S 2.687 3.313 14 O -0.947 6.947 15 O -0.971 6.971 16 C -0.614 4.614 17 C -0.022 4.022 18 C -0.064 4.064 19 C -0.179 4.179 20 C 0.512 3.488 21 F -0.170 7.170 22 F -0.169 7.169 23 F -0.171 7.171 24 C 0.126 3.874 25 F -0.122 7.122 26 C -0.054 4.054 27 H 0.036 0.964 28 H 0.010 0.990 29 H 0.096 0.904 30 H 0.266 0.734 31 H 0.413 0.587 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 3.246 12.360 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.562 4.562 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.855 5.855 13 S 2.771 3.229 14 O -0.937 6.937 15 O -0.961 6.961 16 C -0.696 4.696 17 C -0.041 4.041 18 C -0.082 4.082 19 C -0.181 4.181 20 C 0.458 3.542 21 F -0.151 7.151 22 F -0.150 7.150 23 F -0.153 7.153 24 C 0.106 3.894 25 F -0.100 7.100 26 C -0.074 4.074 27 H 0.055 0.945 28 H 0.029 0.971 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.248 0.752 32 H 0.181 0.819 33 H 0.176 0.824 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.177 3.682 12.663 14.167 hybrid contribution -1.037 -0.675 -0.607 1.379 sum -6.214 3.006 12.056 13.893 Atomic orbital electron populations 1.22344 0.98497 1.00295 1.00951 1.18711 0.90778 0.93231 0.81107 0.92888 1.21179 1.32143 1.13298 0.89612 0.91573 1.24900 0.94776 0.94970 0.99127 1.69835 1.36118 1.22520 1.24134 0.86420 0.79303 0.79269 0.81989 1.20578 1.21044 1.19717 1.55542 1.83549 1.19392 1.27009 1.02262 0.73631 0.73901 0.73074 1.93608 1.62148 1.56667 1.81308 1.93553 1.80749 1.61483 1.60321 1.31736 1.24074 1.06131 1.07643 1.21142 0.94858 0.92441 0.95673 1.21112 0.93157 1.00463 0.93507 1.20343 0.97126 0.96440 1.04201 1.18024 0.84050 0.76480 0.75670 1.93193 1.95958 1.42347 1.83625 1.93257 1.57159 1.72332 1.92283 1.93244 1.96466 1.95639 1.29915 1.17234 0.91085 0.90055 0.91057 1.91585 1.73635 1.80004 1.64814 1.20871 0.91285 1.00687 0.94549 0.94475 0.97072 0.88512 0.92454 0.75227 0.81882 0.82440 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.29 37.15 0.35 -2.98 16 2 C 0.27 5.76 2.89 -69.08 -0.20 5.56 16 3 H 0.05 1.24 7.50 -51.92 -0.39 0.85 16 4 C -0.52 -12.83 8.76 -34.44 -0.30 -13.13 16 5 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.07 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -22.90 11.32 55.43 0.63 -22.27 16 8 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 12 N -1.09 -19.52 5.46 -5.88 -0.03 -19.55 16 13 S 2.69 44.34 5.72 -107.50 -0.61 43.72 16 14 O -0.95 -18.22 16.62 -57.18 -0.95 -19.17 16 15 O -0.97 -16.82 17.28 -57.18 -0.99 -17.81 16 16 C -0.61 -8.78 5.06 -39.59 -0.20 -8.98 16 17 C -0.02 -0.29 8.58 -39.58 -0.34 -0.63 16 18 C -0.06 -0.75 9.43 -39.59 -0.37 -1.12 16 19 C -0.18 -2.23 5.38 -104.55 -0.56 -2.80 16 20 C 0.51 6.13 3.03 36.01 0.11 6.24 16 21 F -0.17 -1.90 15.97 2.25 0.04 -1.86 16 22 F -0.17 -2.16 17.05 2.25 0.04 -2.12 16 23 F -0.17 -2.08 17.05 2.25 0.04 -2.04 16 24 C 0.13 1.65 7.13 -39.42 -0.28 1.37 16 25 F -0.12 -1.60 16.47 2.25 0.04 -1.56 16 26 C -0.05 -0.72 9.50 -39.51 -0.38 -1.09 16 27 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.01 0.19 6.16 -51.93 -0.32 -0.13 16 29 H 0.10 2.23 6.07 -51.93 -0.32 1.92 16 30 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.41 6.64 8.83 -34.47 -0.30 6.33 16 32 H 0.16 2.07 7.62 -52.49 -0.40 1.67 16 33 H 0.16 1.44 7.16 -52.49 -0.38 1.07 16 34 H 0.16 1.87 7.62 -52.49 -0.40 1.47 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -28.54 323.38 -6.70 -35.24 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -2.47 Total: 3.86 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.27 Total: -16.01 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.60 Total: -41.82 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.94 Total: -36.98 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.15 Total: -7.59 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 44.34 SS G_CDS: -0.61 Total: 43.72 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.54 -6.70 -35.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447822830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.385 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds