Wall clock time and date at job start Sat Apr 11 2020 06:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46993 * 2 1 4 4 C 1.50702 * 109.47361 * 240.00581 * 2 1 3 5 5 H 1.08001 * 119.99582 * 240.00127 * 4 2 1 6 6 C 1.37876 * 120.00240 * 59.99433 * 4 2 1 7 7 N 1.31509 * 119.99888 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00012 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47269 * 89.99846 * 8 6 4 10 10 H 1.48497 * 109.47214 * 210.00034 * 8 6 4 11 11 H 1.48500 * 109.47116 * 330.00219 * 8 6 4 12 12 N 1.46504 * 109.47444 * 119.99953 * 2 1 3 13 13 S 1.65596 * 120.00079 * 265.00041 * 12 2 1 14 14 O 1.42092 * 106.40438 * 311.46241 * 13 12 2 15 15 O 1.42093 * 106.40240 * 178.53737 * 13 12 2 16 16 C 1.76203 * 107.21680 * 64.99981 * 13 12 2 17 17 C 1.38262 * 119.98756 * 270.02507 * 16 13 12 18 18 C 1.38229 * 120.05298 * 179.97438 * 17 16 13 19 19 C 1.38228 * 120.02156 * 359.71232 * 18 17 16 20 20 C 1.50699 * 120.00852 * 180.29817 * 19 18 17 21 21 F 1.39897 * 109.47806 * 0.26056 * 20 19 18 22 22 F 1.39900 * 109.46688 * 120.26341 * 20 19 18 23 23 F 1.39902 * 109.47011 * 240.25901 * 20 19 18 24 24 C 1.38437 * 119.97183 * 0.56083 * 19 18 17 25 25 F 1.35104 * 120.02166 * 179.71603 * 24 19 18 26 26 C 1.38177 * 119.98565 * 89.99613 * 16 13 12 27 27 H 1.09008 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47036 * 299.99693 * 1 2 3 29 29 H 1.09005 * 109.47354 * 60.00200 * 1 2 3 30 30 H 0.96995 * 119.99950 * 180.02562 * 7 6 4 31 31 H 0.96998 * 119.99533 * 84.99976 * 12 2 1 32 32 H 1.08001 * 119.97715 * 359.97438 * 17 16 13 33 33 H 1.07993 * 119.98967 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.01639 * 0.02562 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1616 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1962 13 16 2.4122 0.1772 2.5505 14 8 3.2436 1.2443 2.1156 15 8 2.8124 -0.7697 3.5314 16 6 0.9275 0.9147 3.1474 17 6 0.5515 2.1687 2.7028 18 6 -0.6133 2.7483 3.1698 19 6 -1.4065 2.0720 4.0776 20 6 -2.6798 2.7014 4.5814 21 9 -2.8464 3.9569 3.9873 22 9 -3.7659 1.8826 4.2540 23 9 -2.6090 2.8487 5.9709 24 6 -1.0281 0.8188 4.5278 25 9 -1.7998 0.1594 5.4194 26 6 0.1391 0.2393 4.0593 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7088 1.1614 -3.4843 31 1 2.1110 -1.6562 1.1948 32 1 1.1683 2.6958 1.9900 33 1 -0.9062 3.7276 2.8215 34 1 0.4329 -0.7402 4.4065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447822830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:16 Heat of formation + Delta-G solvation = -260.607137 kcal Electronic energy + Delta-G solvation = -28158.764387 eV Core-core repulsion = 23296.719235 eV Total energy + Delta-G solvation = -4862.045152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.44667 -50.35406 -48.86519 -48.85798 -40.48217 -38.40351 -37.27201 -36.99451 -34.12285 -33.71975 -32.09960 -30.12669 -27.70912 -27.18070 -24.51122 -23.86359 -22.81347 -20.79998 -19.98585 -19.73992 -19.70780 -19.38270 -18.91566 -17.93019 -17.72044 -17.29811 -17.05827 -16.98149 -16.32333 -15.82509 -15.80991 -15.69932 -15.38949 -15.26460 -15.07776 -14.99071 -14.79481 -14.57604 -14.51875 -14.13781 -14.00142 -13.54464 -13.31575 -13.26696 -13.23315 -13.03749 -12.98598 -12.79772 -12.45252 -12.21620 -12.09581 -11.97310 -11.16374 -11.02802 -10.57724 -10.24323 -10.10796 -8.12207 -6.24518 -1.06718 -0.62345 -0.28688 1.28506 1.47507 1.50513 1.58492 1.65966 2.11851 2.33952 2.47187 2.53638 2.67611 2.76715 3.11198 3.16793 3.19669 3.54777 3.69460 3.81217 4.10295 4.22591 4.51474 4.52021 4.61028 4.67598 4.93070 5.00793 5.15779 5.25145 5.62189 5.79525 6.06670 6.12531 6.41832 6.84745 7.44752 8.92850 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.003777 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.913845 B = 7412.143538 C = 8390.788660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.270 3.730 3 H 0.034 0.966 4 C -0.541 4.541 5 H 0.065 0.935 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.271 1.271 12 N -1.095 6.095 13 S 2.707 3.293 14 O -0.978 6.978 15 O -0.979 6.979 16 C -0.620 4.620 17 C -0.031 4.031 18 C -0.054 4.054 19 C -0.178 4.178 20 C 0.516 3.484 21 F -0.163 7.163 22 F -0.174 7.174 23 F -0.172 7.172 24 C 0.121 3.879 25 F -0.122 7.122 26 C -0.054 4.054 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.420 0.580 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 3.266 12.895 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.165 3.835 3 H 0.052 0.948 4 C -0.581 4.581 5 H 0.084 0.916 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.857 5.857 13 S 2.795 3.205 14 O -0.968 6.968 15 O -0.969 6.969 16 C -0.706 4.706 17 C -0.050 4.050 18 C -0.073 4.073 19 C -0.181 4.181 20 C 0.462 3.538 21 F -0.144 7.144 22 F -0.155 7.155 23 F -0.153 7.153 24 C 0.101 3.899 25 F -0.100 7.100 26 C -0.074 4.074 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.256 0.744 32 H 0.184 0.816 33 H 0.203 0.797 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.789 3.668 13.193 14.866 hybrid contribution -0.874 -0.641 -0.674 1.277 sum -6.663 3.026 12.518 14.500 Atomic orbital electron populations 1.22167 0.97568 1.00337 1.00991 1.18422 0.91387 0.92195 0.81527 0.94812 1.21577 1.32033 1.13439 0.91002 0.91646 1.25568 0.95120 0.95656 1.01543 1.69938 1.36961 1.23482 1.24508 0.85583 0.78810 0.78282 0.79097 1.20137 1.21150 1.19575 1.55343 1.83701 1.19856 1.26760 1.01370 0.73700 0.73079 0.72325 1.93568 1.64007 1.57462 1.81777 1.93539 1.81382 1.61893 1.60059 1.31265 1.23438 1.06885 1.08995 1.21314 0.95556 0.92226 0.95868 1.21369 0.92063 1.01294 0.92535 1.20503 0.97325 0.96266 1.03973 1.17913 0.83637 0.76601 0.75640 1.93210 1.95894 1.41842 1.83490 1.93252 1.57351 1.72555 1.92323 1.93247 1.96437 1.95641 1.29967 1.17284 0.91104 0.90333 0.91203 1.91587 1.73584 1.80059 1.64815 1.21006 0.91097 1.01233 0.94045 0.94349 0.94458 0.90975 0.92539 0.74369 0.81586 0.79710 0.80451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.12 9.29 71.98 0.67 -5.45 16 2 C 0.27 11.66 2.89 44.24 0.13 11.79 16 3 H 0.03 1.60 7.50 -2.38 -0.02 1.58 16 4 C -0.54 -26.51 8.76 25.60 0.22 -26.28 16 5 H 0.07 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -47.09 11.32 21.45 0.24 -46.84 16 8 Si 0.96 40.23 29.54 68.60 2.03 42.26 16 9 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 10 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 12 N -1.09 -38.56 5.46 -172.51 -0.94 -39.50 16 13 S 2.71 87.54 5.72 -56.49 -0.32 87.22 16 14 O -0.98 -37.55 16.62 -128.00 -2.13 -39.68 16 15 O -0.98 -32.90 17.28 -128.00 -2.21 -35.11 16 16 C -0.62 -16.86 5.06 22.26 0.11 -16.75 16 17 C -0.03 -0.76 8.58 22.27 0.19 -0.57 16 18 C -0.05 -1.14 9.43 22.27 0.21 -0.93 16 19 C -0.18 -4.04 5.38 -19.82 -0.11 -4.15 16 20 C 0.52 11.20 3.03 71.24 0.22 11.41 16 21 F -0.16 -3.23 15.97 44.97 0.72 -2.51 16 22 F -0.17 -4.09 17.05 44.97 0.77 -3.32 16 23 F -0.17 -3.81 17.05 44.97 0.77 -3.04 16 24 C 0.12 2.93 7.13 22.38 0.16 3.09 16 25 F -0.12 -2.97 16.47 44.97 0.74 -2.23 16 26 C -0.05 -1.33 9.50 22.31 0.21 -1.12 16 27 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.04 1.26 6.16 -2.39 -0.01 1.25 16 29 H 0.07 3.32 6.07 -2.38 -0.01 3.30 16 30 H 0.27 13.15 8.31 -92.71 -0.77 12.37 16 31 H 0.42 13.26 8.83 -96.75 -0.85 12.41 16 32 H 0.17 4.05 7.62 -2.91 -0.02 4.02 16 33 H 0.19 2.81 7.16 -2.91 -0.02 2.79 16 34 H 0.18 3.74 7.62 -2.91 -0.02 3.71 16 Total: -1.00 -59.04 323.38 2.46 -56.57 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.34 Total: 13.60 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 2.46 Total: -27.42 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -0.70 Total: -86.35 kcal Atomic # 8 Polarization: -70.45 SS G_CDS: -4.34 Total: -74.79 kcal Atomic # 9 Polarization: -14.09 SS G_CDS: 2.99 Total: -11.10 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 16 Polarization: 87.54 SS G_CDS: -0.32 Total: 87.22 kcal Total: -59.04 2.46 -56.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447822830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.036 kcal (2) G-P(sol) polarization free energy of solvation -59.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds