Wall clock time and date at job start Sat Apr 11 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42100 * 106.40143 * 178.53969 * 13 12 2 15 15 O 1.42100 * 106.40069 * 311.46178 * 13 12 2 16 16 C 1.76197 * 107.21394 * 64.99953 * 13 12 2 17 17 C 1.38264 * 119.98773 * 269.71870 * 16 13 12 18 18 C 1.38228 * 120.04865 * 179.76795 * 17 16 13 19 19 C 1.38212 * 120.02658 * 0.51297 * 18 17 16 20 20 C 1.50700 * 120.01450 * 179.72016 * 19 18 17 21 21 F 1.39904 * 109.47074 * 0.02562 * 20 19 18 22 22 F 1.39898 * 109.47087 * 120.02424 * 20 19 18 23 23 F 1.39901 * 109.47437 * 240.02893 * 20 19 18 24 24 C 1.38444 * 119.97483 * 359.74857 * 19 18 17 25 25 F 1.35094 * 120.02327 * 179.97438 * 24 19 18 26 26 C 1.38173 * 119.98498 * 90.00335 * 16 13 12 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 32 32 H 1.07997 * 119.97626 * 0.03147 * 17 16 13 33 33 H 1.08005 * 119.98631 * 180.26266 * 18 17 16 34 34 H 1.08001 * 120.01646 * 359.95395 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8776 -0.7632 -3.5086 15 8 1.3246 1.0595 -2.7921 16 6 3.7927 1.1912 -2.1370 17 6 3.5901 2.4642 -1.6371 18 6 4.6722 3.2588 -1.3078 19 6 5.9582 2.7854 -1.4879 20 6 7.1377 3.6543 -1.1347 21 9 6.6818 4.8841 -0.6477 22 9 7.9067 3.0201 -0.1531 23 9 7.9196 3.8655 -2.2754 24 6 6.1623 1.5129 -1.9935 25 9 7.4188 1.0493 -2.1705 26 6 5.0774 0.7158 -2.3181 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.7089 1.1611 3.4845 31 1 2.1109 -1.6561 -1.1950 32 1 2.5857 2.8365 -1.4997 33 1 4.5127 4.2515 -0.9133 34 1 5.2355 -0.2772 -2.7123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447822831.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:18 Heat of formation + Delta-G solvation = -243.634076 kcal Electronic energy + Delta-G solvation = -28185.301199 eV Core-core repulsion = 23323.992054 eV Total energy + Delta-G solvation = -4861.309145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.44176 -49.28236 -47.88501 -47.83486 -39.36926 -36.99182 -35.62453 -35.55253 -32.63272 -32.33359 -31.01439 -28.43238 -26.61864 -25.32671 -23.45762 -22.77223 -21.10764 -19.55226 -18.85536 -18.73403 -18.70064 -18.03985 -17.38405 -16.70790 -16.28693 -16.14711 -15.95375 -15.36793 -14.87765 -14.78073 -14.69180 -14.65259 -14.27021 -14.10867 -13.99123 -13.86301 -13.62988 -13.46482 -12.92097 -12.78889 -12.38351 -12.16991 -12.10979 -11.87548 -11.85033 -11.70240 -11.27573 -11.06137 -10.90874 -10.70503 -10.40872 -10.23771 -9.96289 -9.35745 -9.15010 -8.76608 -8.46526 -6.24964 -4.33882 0.06899 0.72016 0.79244 2.30929 2.78612 3.19265 3.24983 3.26206 3.34284 3.44884 3.59819 3.80353 4.00979 4.12775 4.25457 4.26904 4.69600 4.79457 4.93489 5.07279 5.14819 5.31970 5.55846 5.66386 5.75056 6.12541 6.32896 6.68267 6.91500 6.95690 7.44173 7.56423 7.64461 7.90395 8.12832 8.68955 9.33570 10.80446 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.004738 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.566413 B = 5908.032082 C = 7347.662108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.273 3.727 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.899 3.101 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.276 1.276 12 N -1.093 6.093 13 S 2.687 3.313 14 O -0.972 6.972 15 O -0.950 6.950 16 C -0.613 4.613 17 C -0.022 4.022 18 C -0.063 4.063 19 C -0.178 4.178 20 C 0.512 3.488 21 F -0.170 7.170 22 F -0.169 7.169 23 F -0.172 7.172 24 C 0.126 3.874 25 F -0.122 7.122 26 C -0.053 4.053 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.093 0.907 30 H 0.266 0.734 31 H 0.413 0.587 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.220 4.674 -7.500 12.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.169 3.831 3 H 0.059 0.941 4 C -0.570 4.570 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.726 3.274 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.202 1.202 12 N -0.856 5.856 13 S 2.772 3.228 14 O -0.962 6.962 15 O -0.940 6.940 16 C -0.695 4.695 17 C -0.041 4.041 18 C -0.082 4.082 19 C -0.181 4.181 20 C 0.458 3.542 21 F -0.151 7.151 22 F -0.150 7.150 23 F -0.153 7.153 24 C 0.106 3.894 25 F -0.100 7.100 26 C -0.073 4.073 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.248 0.752 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.826 5.014 -8.149 12.361 hybrid contribution 1.477 -0.464 1.537 2.182 sum 9.303 4.550 -6.611 12.286 Atomic orbital electron populations 1.22246 0.97750 1.00204 1.01638 1.18606 0.91703 0.92060 0.80736 0.94107 1.21233 1.32385 1.13454 0.89921 0.91720 1.24899 0.94704 0.94964 0.99077 1.69849 1.35753 1.22449 1.24232 0.86541 0.79221 0.79801 0.81800 1.21092 1.20043 1.20175 1.55579 1.80086 1.18617 1.31304 1.02240 0.73661 0.73574 0.73295 1.93554 1.82272 1.61116 1.59236 1.93601 1.49264 1.67038 1.84057 1.31643 1.16620 1.10614 1.10652 1.21131 1.00774 0.91123 0.91114 1.21099 0.89565 1.01236 0.96261 1.20338 0.94973 0.94985 1.07777 1.18021 0.82533 0.78622 0.75029 1.93192 1.88713 1.45030 1.88213 1.93260 1.77020 1.81754 1.62949 1.93240 1.76465 1.95078 1.50510 1.17223 0.80299 0.91828 1.00053 1.91579 1.37112 1.88544 1.92803 1.20860 0.89657 1.00432 0.96311 0.95445 0.94714 0.88849 0.92368 0.75231 0.81944 0.82461 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.29 37.16 0.35 -3.16 16 2 C 0.27 5.93 2.76 -69.09 -0.19 5.74 16 3 H 0.04 0.91 7.25 -51.93 -0.38 0.53 16 4 C -0.53 -12.78 8.76 -34.44 -0.30 -13.08 16 5 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -22.73 11.32 55.43 0.63 -22.10 16 8 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 9 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 N -1.09 -19.56 5.46 -5.88 -0.03 -19.60 16 13 S 2.69 44.31 5.65 -107.50 -0.61 43.70 16 14 O -0.97 -16.86 17.28 -57.17 -0.99 -17.84 16 15 O -0.95 -17.60 16.54 -57.17 -0.95 -18.55 16 16 C -0.61 -9.21 5.81 -39.60 -0.23 -9.44 16 17 C -0.02 -0.31 8.92 -39.58 -0.35 -0.67 16 18 C -0.06 -0.80 9.43 -39.59 -0.37 -1.17 16 19 C -0.18 -2.40 5.38 -104.56 -0.56 -2.96 16 20 C 0.51 6.54 3.03 36.01 0.11 6.65 16 21 F -0.17 -2.02 15.97 2.25 0.04 -1.99 16 22 F -0.17 -2.31 17.05 2.25 0.04 -2.28 16 23 F -0.17 -2.18 17.05 2.25 0.04 -2.14 16 24 C 0.13 1.78 7.13 -39.42 -0.28 1.50 16 25 F -0.12 -1.70 16.47 2.25 0.04 -1.66 16 26 C -0.05 -0.75 9.50 -39.52 -0.38 -1.12 16 27 H 0.03 0.56 7.64 -51.93 -0.40 0.16 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 30 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.41 6.66 8.83 -34.48 -0.30 6.35 16 32 H 0.16 2.13 7.61 -52.49 -0.40 1.73 16 33 H 0.16 1.57 7.16 -52.48 -0.38 1.19 16 34 H 0.16 2.00 7.62 -52.49 -0.40 1.60 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -28.21 325.40 -6.75 -34.96 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -2.53 Total: 4.12 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.31 Total: -16.13 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.60 Total: -41.70 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.93 Total: -36.39 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 0.15 Total: -8.07 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: 44.31 SS G_CDS: -0.61 Total: 43.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.21 -6.75 -34.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447822831.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.673 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds