Wall clock time and date at job start Sat Apr 11 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42100 * 106.40143 * 178.53969 * 13 12 2 15 15 O 1.42100 * 106.40069 * 311.46178 * 13 12 2 16 16 C 1.76197 * 107.21394 * 64.99953 * 13 12 2 17 17 C 1.38264 * 119.98773 * 269.71870 * 16 13 12 18 18 C 1.38228 * 120.04865 * 179.76795 * 17 16 13 19 19 C 1.38212 * 120.02658 * 0.51297 * 18 17 16 20 20 C 1.50700 * 120.01450 * 179.72016 * 19 18 17 21 21 F 1.39904 * 109.47074 * 0.02562 * 20 19 18 22 22 F 1.39898 * 109.47087 * 120.02424 * 20 19 18 23 23 F 1.39901 * 109.47437 * 240.02893 * 20 19 18 24 24 C 1.38444 * 119.97483 * 359.74857 * 19 18 17 25 25 F 1.35094 * 120.02327 * 179.97438 * 24 19 18 26 26 C 1.38173 * 119.98498 * 90.00335 * 16 13 12 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 32 32 H 1.07997 * 119.97626 * 0.03147 * 17 16 13 33 33 H 1.08005 * 119.98631 * 180.26266 * 18 17 16 34 34 H 1.08001 * 120.01646 * 359.95395 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8776 -0.7632 -3.5086 15 8 1.3246 1.0595 -2.7921 16 6 3.7927 1.1912 -2.1370 17 6 3.5901 2.4642 -1.6371 18 6 4.6722 3.2588 -1.3078 19 6 5.9582 2.7854 -1.4879 20 6 7.1377 3.6543 -1.1347 21 9 6.6818 4.8841 -0.6477 22 9 7.9067 3.0201 -0.1531 23 9 7.9196 3.8655 -2.2754 24 6 6.1623 1.5129 -1.9935 25 9 7.4188 1.0493 -2.1705 26 6 5.0774 0.7158 -2.3181 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.7089 1.1611 3.4845 31 1 2.1109 -1.6561 -1.1950 32 1 2.5857 2.8365 -1.4997 33 1 4.5127 4.2515 -0.9133 34 1 5.2355 -0.2772 -2.7123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447822831.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:17 Heat of formation + Delta-G solvation = -260.998757 kcal Electronic energy + Delta-G solvation = -28186.054188 eV Core-core repulsion = 23323.992054 eV Total energy + Delta-G solvation = -4862.062134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.45882 -50.36385 -48.87706 -48.86981 -40.45425 -38.39917 -37.25277 -36.97828 -34.11386 -33.71955 -32.09285 -30.11571 -27.69288 -27.18565 -24.53385 -23.86319 -22.81969 -20.81731 -19.97597 -19.75197 -19.72074 -19.39557 -18.79720 -17.97135 -17.75100 -17.29965 -17.06254 -17.02589 -16.31120 -15.83817 -15.80499 -15.71185 -15.36782 -15.27771 -15.09279 -15.00332 -14.80507 -14.57506 -14.49942 -14.05090 -14.01169 -13.51460 -13.31856 -13.27360 -13.26433 -13.04140 -12.99102 -12.79714 -12.40813 -12.20484 -12.12871 -11.98478 -11.11619 -11.06348 -10.56443 -10.23731 -10.13085 -8.12002 -6.25001 -1.06051 -0.60144 -0.28470 1.27590 1.47201 1.49341 1.54753 1.66339 2.09703 2.32721 2.46483 2.53546 2.67856 2.76120 3.10286 3.17471 3.18644 3.54362 3.69147 3.81925 4.10205 4.22619 4.50083 4.51741 4.60555 4.66272 4.95347 5.15176 5.21465 5.25573 5.62819 5.78961 6.06717 6.10023 6.42002 6.85081 7.44694 8.92515 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.004738 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.566413 B = 5908.032082 C = 7347.662108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.275 3.725 3 H 0.036 0.964 4 C -0.540 4.540 5 H 0.068 0.932 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.951 3.049 9 H -0.287 1.287 10 H -0.272 1.272 11 H -0.275 1.275 12 N -1.095 6.095 13 S 2.709 3.291 14 O -0.979 6.979 15 O -0.971 6.971 16 C -0.622 4.622 17 C -0.031 4.031 18 C -0.056 4.056 19 C -0.180 4.180 20 C 0.517 3.483 21 F -0.163 7.163 22 F -0.174 7.174 23 F -0.171 7.171 24 C 0.119 3.881 25 F -0.122 7.122 26 C -0.057 4.057 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.265 0.735 31 H 0.420 0.580 32 H 0.169 0.831 33 H 0.185 0.815 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.079 4.790 -7.498 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.170 3.830 3 H 0.054 0.946 4 C -0.579 4.579 5 H 0.086 0.914 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.777 3.223 9 H -0.213 1.213 10 H -0.197 1.197 11 H -0.201 1.201 12 N -0.856 5.856 13 S 2.796 3.204 14 O -0.969 6.969 15 O -0.961 6.961 16 C -0.707 4.707 17 C -0.050 4.050 18 C -0.075 4.075 19 C -0.183 4.183 20 C 0.463 3.537 21 F -0.144 7.144 22 F -0.156 7.156 23 F -0.152 7.152 24 C 0.099 3.901 25 F -0.101 7.101 26 C -0.076 4.076 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.256 0.744 32 H 0.187 0.813 33 H 0.203 0.797 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.669 5.095 -8.163 12.951 hybrid contribution 1.258 -0.462 1.483 1.999 sum 9.926 4.633 -6.680 12.830 Atomic orbital electron populations 1.22160 0.98203 1.00102 1.00924 1.18363 0.91365 0.91918 0.81359 0.94624 1.21572 1.31992 1.13498 0.90847 0.91421 1.25536 0.95074 0.95616 1.01413 1.69953 1.36760 1.23516 1.24524 0.85727 0.78612 0.78901 0.79075 1.21267 1.19716 1.20054 1.55392 1.80568 1.19216 1.30469 1.01406 0.73424 0.73030 0.72494 1.93542 1.82428 1.61679 1.59242 1.93570 1.50862 1.67410 1.84292 1.31333 1.16153 1.10974 1.12283 1.21348 1.01685 0.91025 0.90991 1.21386 0.88730 1.02132 0.95215 1.20513 0.95576 0.94900 1.07309 1.17897 0.82219 0.78701 0.74912 1.93208 1.88594 1.44506 1.88111 1.93251 1.77159 1.81950 1.63205 1.93245 1.76418 1.95064 1.50458 1.17304 0.80294 0.92167 1.00381 1.91578 1.37055 1.88596 1.92840 1.21025 0.89306 1.01160 0.96133 0.94671 0.94485 0.90987 0.92543 0.74375 0.81313 0.79730 0.80489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.76 9.29 71.98 0.67 -6.09 16 2 C 0.28 11.80 2.76 44.24 0.12 11.92 16 3 H 0.04 1.58 7.25 -2.39 -0.02 1.56 16 4 C -0.54 -25.56 8.76 25.60 0.22 -25.33 16 5 H 0.07 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.02 1.21 5.30 84.66 0.45 1.65 16 7 N -0.91 -46.54 11.32 21.45 0.24 -46.29 16 8 Si 0.95 39.60 29.54 68.60 2.03 41.63 16 9 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 12 N -1.09 -38.20 5.46 -172.53 -0.94 -39.14 16 13 S 2.71 86.70 5.65 -56.49 -0.32 86.38 16 14 O -0.98 -32.74 17.28 -128.00 -2.21 -34.95 16 15 O -0.97 -35.27 16.54 -128.00 -2.12 -37.39 16 16 C -0.62 -17.93 5.81 22.26 0.13 -17.80 16 17 C -0.03 -0.84 8.92 22.27 0.20 -0.64 16 18 C -0.06 -1.31 9.43 22.26 0.21 -1.10 16 19 C -0.18 -4.51 5.38 -19.82 -0.11 -4.62 16 20 C 0.52 12.21 3.03 71.24 0.22 12.42 16 21 F -0.16 -3.50 15.97 44.97 0.72 -2.79 16 22 F -0.17 -4.50 17.05 44.97 0.77 -3.73 16 23 F -0.17 -4.03 17.05 44.97 0.77 -3.26 16 24 C 0.12 3.16 7.13 22.38 0.16 3.32 16 25 F -0.12 -3.23 16.47 44.97 0.74 -2.49 16 26 C -0.06 -1.51 9.50 22.31 0.21 -1.30 16 27 H 0.03 1.44 7.64 -2.38 -0.02 1.42 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 30 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 31 H 0.42 13.14 8.83 -96.74 -0.85 12.28 16 32 H 0.17 4.23 7.61 -2.91 -0.02 4.21 16 33 H 0.19 3.17 7.16 -2.91 -0.02 3.15 16 34 H 0.18 4.09 7.62 -2.91 -0.02 4.07 16 Total: -1.00 -57.29 325.40 2.49 -54.80 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.34 Total: 14.80 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 2.48 Total: -27.57 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -0.70 Total: -85.43 kcal Atomic # 8 Polarization: -68.01 SS G_CDS: -4.33 Total: -72.34 kcal Atomic # 9 Polarization: -15.26 SS G_CDS: 2.99 Total: -12.27 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 16 Polarization: 86.70 SS G_CDS: -0.32 Total: 86.38 kcal Total: -57.29 2.49 -54.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447822831.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.201 kcal (2) G-P(sol) polarization free energy of solvation -57.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds