Wall clock time and date at job start Sat Apr 11 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28439 * 125.19325 * 2 1 4 4 C 1.30855 * 110.99482 * 180.27284 * 3 2 1 5 5 C 1.39747 * 107.88666 * 359.71267 * 4 3 2 6 6 Br 1.89102 * 127.33662 * 179.97438 * 5 4 3 7 7 C 1.36747 * 125.19352 * 179.77871 * 2 1 3 8 8 C 1.46928 * 126.90840 * 0.02562 * 7 2 1 9 9 O 1.21686 * 120.00004 * 265.12213 * 8 7 2 10 10 N 1.34774 * 119.99732 * 85.12634 * 8 7 2 11 11 C 1.36853 * 119.99762 * 184.94021 * 10 8 7 12 12 H 1.08004 * 119.99847 * 63.76670 * 11 10 8 13 13 C 1.39047 * 120.00194 * 243.76195 * 11 10 8 14 14 N 1.31368 * 119.99984 * 352.09974 * 13 11 10 15 15 Si 1.86795 * 119.99965 * 172.09866 * 13 11 10 16 16 H 1.48500 * 109.47416 * 59.99857 * 15 13 11 17 17 H 1.48498 * 109.47115 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47265 * 299.99840 * 15 13 11 19 19 C 1.46496 * 120.00504 * 4.94093 * 10 8 7 20 20 C 1.55236 * 110.47275 * 181.43690 * 19 10 8 21 21 C 1.54888 * 102.59143 * 203.39370 * 20 19 10 22 22 C 1.54275 * 104.30953 * 37.93242 * 21 20 19 23 23 C 1.53870 * 106.59911 * 336.32491 * 22 21 20 24 24 H 1.08993 * 109.47424 * 274.92071 * 1 2 3 25 25 H 1.09002 * 109.46739 * 34.92604 * 1 2 3 26 26 H 1.09004 * 109.46834 * 154.91762 * 1 2 3 27 27 H 1.08003 * 126.05452 * 179.72727 * 4 3 2 28 28 H 0.96997 * 120.00147 * 180.02562 * 14 13 11 29 29 H 1.08999 * 110.43538 * 304.09424 * 19 10 8 30 30 H 1.09003 * 110.89234 * 85.10142 * 20 19 10 31 31 H 1.08999 * 110.76766 * 321.63237 * 20 19 10 32 32 H 1.08999 * 110.48842 * 279.19234 * 21 20 19 33 33 H 1.08995 * 110.48721 * 156.67491 * 21 20 19 34 34 H 1.09003 * 110.02571 * 95.60958 * 22 21 20 35 35 H 1.09001 * 110.02849 * 216.99035 * 22 21 20 36 36 H 1.08998 * 110.03499 * 119.28734 * 23 22 21 37 37 H 1.08996 * 110.03169 * 240.66198 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4738 0.7287 -0.0058 5 6 3.5637 -0.6659 -0.0033 6 35 5.1379 -1.7137 -0.0098 7 6 2.2531 -1.1175 0.0043 8 6 1.8016 -2.5157 0.0092 9 8 1.6995 -3.1184 1.0613 10 7 1.5006 -3.1306 -1.1517 11 6 0.9842 -4.3979 -1.1409 12 1 0.0208 -4.5846 -0.6899 13 6 1.6998 -5.4452 -1.7105 14 7 2.7942 -5.1977 -2.3939 15 14 1.1052 -7.2039 -1.5041 16 1 -0.2537 -7.3387 -2.0876 17 1 2.0366 -8.1264 -2.2015 18 1 1.0595 -7.5446 -0.0594 19 6 1.7261 -2.4425 -2.4252 20 6 1.2717 -3.3340 -3.6120 21 6 2.1024 -2.7733 -4.7929 22 6 3.4747 -2.4422 -4.1706 23 6 3.2354 -2.2319 -2.6652 24 1 -0.3634 0.0881 1.0238 25 1 -0.3633 0.8426 -0.5884 26 1 -0.3633 -0.9308 -0.4357 27 1 4.3042 1.4192 -0.0113 28 1 3.2932 -5.9282 -2.7916 29 1 1.2007 -1.4876 -2.4401 30 1 0.2045 -3.2165 -3.8002 31 1 1.5196 -4.3792 -3.4272 32 1 1.6374 -1.8720 -5.1925 33 1 2.2095 -3.5250 -5.5749 34 1 4.1651 -3.2711 -4.3267 35 1 3.8770 -1.5324 -4.6162 36 1 3.8098 -2.9586 -2.0907 37 1 3.5221 -1.2199 -2.3794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449955813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:21 Heat of formation + Delta-G solvation = 64.791823 kcal Electronic energy + Delta-G solvation = -23448.451817 eV Core-core repulsion = 20081.655427 eV Total energy + Delta-G solvation = -3366.796390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.17720 -38.80562 -36.67311 -33.73480 -33.35272 -32.09829 -31.17420 -29.26475 -27.60607 -26.77173 -26.71340 -25.13066 -22.14401 -21.14573 -19.85233 -19.63449 -18.83845 -17.15237 -16.84087 -16.03404 -15.31716 -15.06814 -14.66968 -14.15325 -14.07695 -13.71891 -13.30233 -13.05706 -12.81482 -12.46543 -12.40517 -12.22867 -11.81717 -11.26068 -11.02207 -10.93338 -10.84005 -10.70802 -10.41760 -10.28492 -10.21508 -9.89261 -9.81256 -9.63324 -9.34579 -8.96563 -8.74798 -8.22657 -8.19734 -7.29114 -6.38346 -4.33431 2.00272 2.03170 2.80079 2.83378 3.17617 3.22949 3.26735 3.66978 4.07651 4.53817 4.77545 4.91239 5.22610 5.31704 5.32075 5.50363 5.56231 5.67547 5.71133 5.83582 5.93734 6.18685 6.44426 6.47261 6.53344 6.54699 6.62624 6.79155 6.84454 6.98137 7.03405 7.21403 7.39947 7.56080 7.92059 8.26496 8.29641 8.42004 9.02321 9.10965 9.82349 10.61019 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.006556 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.050983 B = 4269.773880 C = 4462.436039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.277 5.277 3 N -0.296 5.296 4 C 0.032 3.968 5 C -0.184 4.184 6 Br -0.005 7.005 7 C 0.056 3.944 8 C 0.536 3.464 9 O -0.545 6.545 10 N -0.420 5.420 11 C -0.318 4.318 12 H 0.081 0.919 13 C 0.055 3.945 14 N -0.841 5.841 15 Si 0.913 3.087 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.147 3.853 20 C -0.131 4.131 21 C -0.118 4.118 22 C -0.103 4.103 23 C -0.124 4.124 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.187 0.813 28 H 0.271 0.729 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.145 0.855 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.100 0.900 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 8.193 -1.779 8.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.064 5.064 3 N -0.125 5.125 4 C -0.148 4.148 5 C -0.274 4.274 6 Br 0.079 6.921 7 C -0.077 4.077 8 C 0.320 3.680 9 O -0.424 6.424 10 N -0.140 5.140 11 C -0.446 4.446 12 H 0.098 0.902 13 C -0.151 4.151 14 N -0.476 5.476 15 Si 0.739 3.261 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.195 1.195 19 C 0.044 3.956 20 C -0.168 4.168 21 C -0.156 4.156 22 C -0.141 4.141 23 C -0.162 4.162 24 H 0.103 0.897 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.204 0.796 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.162 0.838 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.058 8.303 -1.375 8.483 hybrid contribution 0.070 -1.010 -0.034 1.013 sum 1.128 7.294 -1.409 7.514 Atomic orbital electron populations 1.22161 0.73058 1.05375 1.04441 1.45584 1.07407 1.02058 1.51379 1.73083 1.03376 1.13852 1.22235 1.23351 0.93702 0.92753 1.04996 1.22184 0.91587 0.94555 1.19061 1.96595 1.27978 1.69525 1.98001 1.22336 0.90356 0.90791 1.04257 1.17371 0.81179 0.82977 0.86481 1.90718 1.54862 1.65575 1.31292 1.43344 1.54555 1.14098 1.01970 1.18993 1.02925 0.82394 1.40248 0.90157 1.25645 0.94952 0.99854 0.94615 1.69856 1.15227 1.32794 1.29753 0.86231 0.78561 0.82155 0.79176 1.19798 1.20807 1.19507 1.21857 0.95022 0.92925 0.85825 1.23333 0.95955 1.06567 0.90935 1.22223 0.96534 0.98696 0.98117 1.21859 0.97075 0.99283 0.95901 1.22635 0.97007 1.00154 0.96400 0.89703 0.88580 0.88490 0.79624 0.91884 0.94845 0.94642 0.83760 0.94060 0.92980 0.92083 0.94303 0.88182 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 11.22 59.85 0.67 1.91 16 2 N -0.28 -4.96 3.75 -63.86 -0.24 -5.20 16 3 N -0.30 -5.10 11.89 30.60 0.36 -4.73 16 4 C 0.03 0.54 12.03 -17.40 -0.21 0.33 16 5 C -0.18 -3.53 4.85 -38.88 -0.19 -3.72 16 6 Br 0.00 -0.08 31.97 -68.01 -2.17 -2.26 16 7 C 0.06 1.16 4.80 -82.01 -0.39 0.76 16 8 C 0.54 13.01 6.47 -12.74 -0.08 12.93 16 9 O -0.55 -15.19 17.08 5.20 0.09 -15.10 16 10 N -0.42 -10.03 2.45 -107.15 -0.26 -10.29 16 11 C -0.32 -8.05 7.68 -15.01 -0.12 -8.17 16 12 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 13 C 0.06 1.35 4.10 -17.45 -0.07 1.27 16 14 N -0.84 -20.39 9.32 55.50 0.52 -19.87 16 15 Si 0.91 19.55 29.56 -169.99 -5.02 14.52 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.15 3.15 2.63 -66.08 -0.17 2.97 16 20 C -0.13 -2.70 5.30 -24.55 -0.13 -2.83 16 21 C -0.12 -2.11 6.82 -25.07 -0.17 -2.28 16 22 C -0.10 -1.91 6.80 -25.61 -0.17 -2.08 16 23 C -0.12 -2.55 3.89 -25.61 -0.10 -2.65 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.10 1.40 7.66 -51.93 -0.40 1.01 16 27 H 0.19 2.39 8.06 -52.48 -0.42 1.97 16 28 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 29 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.15 3.33 3.42 -51.93 -0.18 3.15 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 2.32 6.11 -51.93 -0.32 2.00 16 37 H 0.04 0.75 6.16 -51.93 -0.32 0.43 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -28.92 316.38 -7.65 -36.57 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.55 Total: 3.16 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.14 Total: -1.56 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.38 Total: -40.10 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.09 Total: -15.10 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.17 Total: -2.26 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.92 -7.65 -36.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449955813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.364 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds