Wall clock time and date at job start Sat Apr 11 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00129 * 2 1 4 4 H 1.48500 * 109.46981 * 269.99905 * 3 2 1 5 5 H 1.48504 * 109.46898 * 30.00015 * 3 2 1 6 6 H 1.48498 * 109.47048 * 149.99554 * 3 2 1 7 7 C 1.37880 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99774 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99827 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47345 * 299.99674 * 9 7 2 11 11 O 1.42893 * 109.47377 * 60.00049 * 9 7 2 12 12 C 1.53003 * 109.47119 * 180.02562 * 9 7 2 13 13 S 1.81402 * 109.47558 * 180.02562 * 12 9 7 14 14 C 1.76189 * 103.00154 * 179.97438 * 13 12 9 15 15 N 1.29679 * 125.41631 * 359.95478 * 14 13 12 16 16 N 1.37763 * 115.60263 * 179.77668 * 15 14 13 17 17 C 1.29592 * 115.62322 * 0.50323 * 16 15 14 18 18 N 1.39042 * 125.40305 * 179.79820 * 17 16 15 19 19 C 1.39708 * 119.99770 * 5.83432 * 18 17 16 20 20 C 1.38977 * 120.06395 * 209.66328 * 19 18 17 21 21 C 1.38080 * 119.97488 * 179.73538 * 20 19 18 22 22 C 1.38284 * 120.10252 * 0.24654 * 21 20 19 23 23 C 1.38506 * 120.12410 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.98524 * 179.97438 * 23 22 21 25 25 C 1.38340 * 120.02770 * 359.97438 * 23 22 21 26 26 S 1.76037 * 109.19444 * 359.53404 * 17 16 15 27 27 H 0.97009 * 119.99623 * 0.02562 * 1 2 3 28 28 H 0.96699 * 113.99988 * 59.99943 * 11 9 7 29 29 H 1.09002 * 109.47293 * 59.99476 * 12 9 7 30 30 H 1.09002 * 109.46966 * 300.00049 * 12 9 7 31 31 H 0.97003 * 120.00405 * 185.84225 * 18 17 16 32 32 H 1.08002 * 120.00889 * 0.02562 * 20 19 18 33 33 H 1.07998 * 119.94899 * 180.27827 * 21 20 19 34 34 H 1.07992 * 119.93890 * 179.97438 * 22 21 20 35 35 H 1.07994 * 120.05511 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0018 13 16 1.3382 -5.2331 0.0011 14 6 2.6267 -6.4347 0.0019 15 7 3.8971 -6.1743 0.0020 16 7 4.7297 -7.2719 0.0076 17 6 4.1376 -8.4246 0.0017 18 7 4.7776 -9.6589 0.0016 19 6 6.1671 -9.7253 0.1312 20 6 6.8715 -10.7717 -0.4521 21 6 8.2454 -10.8325 -0.3276 22 6 8.9214 -9.8563 0.3812 23 6 8.2229 -8.8147 0.9690 24 9 8.8862 -7.8628 1.6613 25 6 6.8465 -8.7486 0.8475 26 16 2.3943 -8.1797 0.0016 27 1 -0.4850 0.8402 -0.0004 28 1 0.9223 -2.5299 -1.9975 29 1 2.8712 -3.6040 0.8922 30 1 2.8725 -3.6048 -0.8877 31 1 4.2595 -10.4740 -0.0885 32 1 6.3450 -11.5344 -1.0066 33 1 8.7928 -11.6434 -0.7849 34 1 9.9959 -9.9067 0.4773 35 1 6.3015 -7.9364 1.3053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450731221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:24 Heat of formation + Delta-G solvation = 3.173487 kcal Electronic energy + Delta-G solvation = -22846.600967 eV Core-core repulsion = 19012.896563 eV Total energy + Delta-G solvation = -3833.704403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.08048 -40.28491 -38.98314 -36.18653 -36.02806 -32.25282 -31.45856 -30.94781 -29.86962 -29.47992 -25.47920 -25.25154 -23.28580 -23.13674 -21.36262 -20.89767 -19.67487 -18.31850 -17.41073 -17.27486 -16.70096 -16.36586 -16.15384 -15.75645 -15.39434 -15.31480 -14.71016 -14.46002 -14.23284 -14.08481 -13.89711 -13.64856 -13.27247 -13.13908 -12.52573 -12.31291 -12.10963 -11.76319 -11.56568 -11.33205 -11.03814 -10.95886 -10.90815 -10.40113 -10.18746 -10.10156 -9.96526 -9.50544 -9.28674 -9.13266 -8.69945 -8.43318 -8.37837 -7.43659 -6.13124 -4.33122 0.23209 0.46728 0.85168 0.95133 1.04709 1.49180 2.21091 2.52034 2.64416 3.23897 3.26653 3.31141 3.34948 3.96098 4.31768 4.32209 4.42885 4.64476 4.72539 4.95055 5.00696 5.14285 5.29305 5.54241 5.69442 5.73147 5.87740 5.90192 5.92150 6.08889 6.24495 6.55142 6.56685 6.71946 7.44437 7.70864 7.89363 7.95224 8.68026 9.19429 9.43012 10.90875 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002416 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.388045 B =11586.422843 C =13138.812334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.082 3.918 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.569 4.569 8 H 0.061 0.939 9 C 0.245 3.755 10 H 0.069 0.931 11 O -0.559 6.559 12 C -0.119 4.119 13 S 0.023 5.977 14 C 0.032 3.968 15 N -0.269 5.269 16 N -0.331 5.331 17 C 0.284 3.716 18 N -0.626 5.626 19 C 0.198 3.802 20 C -0.164 4.164 21 C -0.065 4.065 22 C -0.178 4.178 23 C 0.129 3.871 24 F -0.135 7.135 25 C -0.168 4.168 26 S 0.075 5.925 27 H 0.263 0.737 28 H 0.350 0.650 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.428 0.572 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.637 -25.057 -0.475 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.609 4.609 8 H 0.080 0.920 9 C 0.185 3.815 10 H 0.087 0.913 11 O -0.362 6.362 12 C -0.269 4.269 13 S 0.253 5.747 14 C -0.366 4.366 15 N -0.099 5.099 16 N -0.165 5.165 17 C -0.099 4.099 18 N -0.259 5.259 19 C 0.099 3.901 20 C -0.186 4.186 21 C -0.084 4.084 22 C -0.198 4.198 23 C 0.109 3.891 24 F -0.113 7.113 25 C -0.190 4.190 26 S 0.309 5.691 27 H 0.073 0.927 28 H 0.194 0.806 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.267 0.733 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.256 -24.758 0.031 26.432 hybrid contribution 2.201 0.937 -0.291 2.410 sum 11.456 -23.821 -0.261 26.434 Atomic orbital electron populations 1.70074 1.05963 1.26871 1.46167 1.25030 0.94792 0.99269 0.93494 0.86552 0.79941 0.82872 0.78366 1.20367 1.20975 1.19642 1.21466 0.93376 0.90230 1.55838 0.92035 1.19267 0.87480 0.87657 0.87082 0.91342 1.86591 1.38197 1.96002 1.15388 1.25134 1.03519 0.91941 1.06277 1.86158 1.02992 0.97184 1.88337 1.31037 1.01213 0.99676 1.04669 1.75635 0.98124 1.18127 1.17972 1.75218 1.25424 0.92996 1.22833 1.25862 0.92713 0.91008 1.00303 1.41109 1.04365 1.03401 1.77063 1.17347 0.81724 0.95812 0.95202 1.20843 0.94487 1.00229 1.03023 1.20738 0.93183 0.97788 0.96696 1.21128 1.01033 0.95421 1.02234 1.17429 0.89652 0.87583 0.94440 1.91531 1.80547 1.62438 1.76790 1.21126 0.93181 1.02462 1.02252 1.85492 1.02621 1.02247 1.78755 0.92683 0.80571 0.88847 0.89410 0.73288 0.84928 0.84480 0.84616 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.39 12.84 55.43 0.71 -23.68 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.57 -15.01 8.76 -34.44 -0.30 -15.31 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.25 5.89 2.87 -27.88 -0.08 5.81 16 10 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 11 O -0.56 -13.53 12.33 -35.23 -0.43 -13.97 16 12 C -0.12 -2.37 5.18 37.16 0.19 -2.18 16 13 S 0.02 0.39 21.81 -107.50 -2.34 -1.95 16 14 C 0.03 0.52 7.82 51.85 0.41 0.93 16 15 N -0.27 -4.86 11.62 31.12 0.36 -4.49 16 16 N -0.33 -5.41 9.34 30.87 0.29 -5.12 16 17 C 0.28 3.60 8.09 -87.33 -0.71 2.90 16 18 N -0.63 -5.68 5.52 -10.35 -0.06 -5.74 16 19 C 0.20 1.93 6.41 -83.76 -0.54 1.39 16 20 C -0.16 -1.15 9.95 -39.37 -0.39 -1.55 16 21 C -0.07 -0.43 10.04 -39.62 -0.40 -0.83 16 22 C -0.18 -1.49 10.02 -39.47 -0.40 -1.88 16 23 C 0.13 1.46 7.30 -39.44 -0.29 1.17 16 24 F -0.13 -1.72 17.27 2.25 0.04 -1.68 16 25 C -0.17 -2.03 8.77 -39.31 -0.34 -2.38 16 26 S 0.08 0.91 23.39 -107.50 -2.51 -1.61 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.35 7.51 9.04 45.56 0.41 7.93 16 29 H 0.09 1.88 8.14 -51.92 -0.42 1.46 16 30 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 31 H 0.43 2.29 8.92 -40.82 -0.36 1.92 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.15 2.17 6.18 -52.49 -0.32 1.85 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -31.54 344.36 -9.08 -40.62 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -2.35 Total: 6.56 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.94 Total: -9.81 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 1.30 Total: -39.03 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.43 Total: -13.97 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -4.86 Total: -3.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.54 -9.08 -40.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450731221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.789 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds