Wall clock time and date at job start Sat Apr 11 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00129 * 2 1 4 4 H 1.48500 * 109.46981 * 269.99905 * 3 2 1 5 5 H 1.48504 * 109.46898 * 30.00015 * 3 2 1 6 6 H 1.48498 * 109.47048 * 149.99554 * 3 2 1 7 7 C 1.37880 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99774 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99827 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47345 * 299.99674 * 9 7 2 11 11 O 1.42893 * 109.47377 * 60.00049 * 9 7 2 12 12 C 1.53003 * 109.47119 * 180.02562 * 9 7 2 13 13 S 1.81402 * 109.47558 * 180.02562 * 12 9 7 14 14 C 1.76189 * 103.00154 * 179.97438 * 13 12 9 15 15 N 1.29679 * 125.41631 * 359.95478 * 14 13 12 16 16 N 1.37763 * 115.60263 * 179.77668 * 15 14 13 17 17 C 1.29592 * 115.62322 * 0.50323 * 16 15 14 18 18 N 1.39042 * 125.40305 * 179.79820 * 17 16 15 19 19 C 1.39708 * 119.99770 * 5.83432 * 18 17 16 20 20 C 1.38977 * 120.06395 * 209.66328 * 19 18 17 21 21 C 1.38080 * 119.97488 * 179.73538 * 20 19 18 22 22 C 1.38284 * 120.10252 * 0.24654 * 21 20 19 23 23 C 1.38506 * 120.12410 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.98524 * 179.97438 * 23 22 21 25 25 C 1.38340 * 120.02770 * 359.97438 * 23 22 21 26 26 S 1.76037 * 109.19444 * 359.53404 * 17 16 15 27 27 H 0.97009 * 119.99623 * 0.02562 * 1 2 3 28 28 H 0.96699 * 113.99988 * 59.99943 * 11 9 7 29 29 H 1.09002 * 109.47293 * 59.99476 * 12 9 7 30 30 H 1.09002 * 109.46966 * 300.00049 * 12 9 7 31 31 H 0.97003 * 120.00405 * 185.84225 * 18 17 16 32 32 H 1.08002 * 120.00889 * 0.02562 * 20 19 18 33 33 H 1.07998 * 119.94899 * 180.27827 * 21 20 19 34 34 H 1.07992 * 119.93890 * 179.97438 * 22 21 20 35 35 H 1.07994 * 120.05511 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0018 13 16 1.3382 -5.2331 0.0011 14 6 2.6267 -6.4347 0.0019 15 7 3.8971 -6.1743 0.0020 16 7 4.7297 -7.2719 0.0076 17 6 4.1376 -8.4246 0.0017 18 7 4.7776 -9.6589 0.0016 19 6 6.1671 -9.7253 0.1312 20 6 6.8715 -10.7717 -0.4521 21 6 8.2454 -10.8325 -0.3276 22 6 8.9214 -9.8563 0.3812 23 6 8.2229 -8.8147 0.9690 24 9 8.8862 -7.8628 1.6613 25 6 6.8465 -8.7486 0.8475 26 16 2.3943 -8.1797 0.0016 27 1 -0.4850 0.8402 -0.0004 28 1 0.9223 -2.5299 -1.9975 29 1 2.8712 -3.6040 0.8922 30 1 2.8725 -3.6048 -0.8877 31 1 4.2595 -10.4740 -0.0885 32 1 6.3450 -11.5344 -1.0066 33 1 8.7928 -11.6434 -0.7849 34 1 9.9959 -9.9067 0.4773 35 1 6.3015 -7.9364 1.3053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450731221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:24 Heat of formation + Delta-G solvation = -18.109711 kcal Electronic energy + Delta-G solvation = -22847.523876 eV Core-core repulsion = 19012.896563 eV Total energy + Delta-G solvation = -3834.627312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.96388 -41.18357 -39.94414 -37.94895 -37.02146 -34.31311 -32.51278 -31.67677 -31.59760 -30.35345 -27.41770 -26.36685 -24.17128 -23.85670 -23.14818 -21.95082 -20.71060 -19.33316 -19.18145 -18.36498 -17.58833 -17.30542 -16.99875 -16.72623 -16.63802 -16.50224 -16.37747 -16.14930 -15.97203 -15.40918 -14.83234 -14.59205 -14.41775 -14.17474 -13.93974 -13.49889 -13.29945 -12.92025 -12.86568 -12.82603 -12.73711 -12.52217 -12.16838 -12.08633 -11.63920 -11.31847 -11.15326 -11.07624 -10.75132 -10.49354 -10.35868 -9.87037 -9.25954 -8.70126 -8.19140 -6.45542 -0.85814 -0.55838 -0.17433 0.14158 0.18640 0.29306 1.09509 1.11948 1.40958 1.42341 1.52902 1.69470 2.38018 2.59314 3.07525 3.14533 3.38460 3.80788 3.86367 4.02613 4.03578 4.08547 4.15696 4.22493 4.31986 4.57811 4.86196 4.89141 5.06308 5.16480 5.30236 5.45367 5.47642 5.63024 5.85353 5.94064 6.04924 6.62888 6.81210 7.26462 7.43196 8.85236 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002416 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.388045 B =11586.422843 C =13138.812334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.032 3.968 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.584 4.584 8 H 0.060 0.940 9 C 0.249 3.751 10 H 0.040 0.960 11 O -0.570 6.570 12 C -0.108 4.108 13 S 0.033 5.967 14 C 0.002 3.998 15 N -0.299 5.299 16 N -0.370 5.370 17 C 0.287 3.713 18 N -0.605 5.605 19 C 0.179 3.821 20 C -0.144 4.144 21 C -0.055 4.055 22 C -0.172 4.172 23 C 0.096 3.904 24 F -0.154 7.154 25 C -0.193 4.193 26 S 0.157 5.843 27 H 0.265 0.735 28 H 0.361 0.639 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.447 0.553 32 H 0.172 0.828 33 H 0.180 0.820 34 H 0.156 0.844 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.850 -28.466 -1.683 30.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.624 4.624 8 H 0.078 0.922 9 C 0.189 3.811 10 H 0.058 0.942 11 O -0.374 6.374 12 C -0.258 4.258 13 S 0.263 5.737 14 C -0.396 4.396 15 N -0.129 5.129 16 N -0.205 5.205 17 C -0.095 4.095 18 N -0.241 5.241 19 C 0.081 3.919 20 C -0.166 4.166 21 C -0.073 4.073 22 C -0.191 4.191 23 C 0.076 3.924 24 F -0.133 7.133 25 C -0.216 4.216 26 S 0.392 5.608 27 H 0.074 0.926 28 H 0.206 0.794 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.291 0.709 32 H 0.190 0.810 33 H 0.197 0.803 34 H 0.173 0.827 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.484 -28.222 -1.181 30.130 hybrid contribution 1.927 1.689 0.074 2.563 sum 12.410 -26.534 -1.107 29.314 Atomic orbital electron populations 1.70188 1.07451 1.27737 1.47540 1.25836 0.95542 1.02694 0.93090 0.85529 0.78617 0.78727 0.78548 1.19674 1.20571 1.19293 1.21831 0.93547 0.91711 1.55270 0.92165 1.18970 0.87312 0.88770 0.86084 0.94190 1.86528 1.38760 1.96122 1.15965 1.24591 1.02336 0.93127 1.05789 1.85864 1.02534 0.95791 1.89490 1.30955 1.00678 1.02187 1.05828 1.75596 0.99074 1.20244 1.17994 1.75232 1.25580 0.93775 1.25947 1.26173 0.93683 0.91497 0.98133 1.41175 1.04516 1.02747 1.75669 1.17551 0.81838 0.96478 0.96016 1.21304 0.94802 0.99277 1.01174 1.21280 0.93167 0.97772 0.95126 1.21474 1.02124 0.94445 1.01102 1.17799 0.89746 0.88719 0.96107 1.91472 1.80817 1.63482 1.77517 1.21039 0.93773 1.02825 1.03958 1.85110 1.00681 0.97546 1.77481 0.92619 0.79350 0.89627 0.89616 0.70916 0.81049 0.80262 0.82672 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.00 12.84 21.45 0.28 -51.73 16 2 C 0.03 1.76 5.40 84.66 0.46 2.22 16 3 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.58 -31.61 8.76 25.60 0.22 -31.39 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.25 12.39 2.87 29.85 0.09 12.48 16 10 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 11 O -0.57 -28.31 12.33 -148.98 -1.84 -30.15 16 12 C -0.11 -4.50 5.18 71.98 0.37 -4.12 16 13 S 0.03 1.18 21.81 -56.49 -1.23 -0.05 16 14 C 0.00 0.08 7.82 130.56 1.02 1.10 16 15 N -0.30 -11.09 11.62 -55.46 -0.64 -11.73 16 16 N -0.37 -12.29 9.34 -56.26 -0.53 -12.81 16 17 C 0.29 6.98 8.09 179.20 1.45 8.43 16 18 N -0.61 -9.54 5.52 -186.67 -1.03 -10.57 16 19 C 0.18 3.14 6.41 38.22 0.24 3.39 16 20 C -0.14 -1.40 9.95 22.41 0.22 -1.17 16 21 C -0.06 -0.47 10.04 22.24 0.22 -0.25 16 22 C -0.17 -2.47 10.02 22.34 0.22 -2.24 16 23 C 0.10 2.19 7.30 22.36 0.16 2.35 16 24 F -0.15 -4.19 17.27 44.97 0.78 -3.41 16 25 C -0.19 -4.77 8.77 22.45 0.20 -4.57 16 26 S 0.16 3.51 23.39 -56.49 -1.32 2.19 16 27 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 28 H 0.36 15.86 9.04 -74.06 -0.67 15.19 16 29 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 30 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 31 H 0.45 3.10 8.92 -92.71 -0.83 2.27 16 32 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 33 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 34 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.12 3.67 6.18 -2.91 -0.02 3.66 16 Total: -1.00 -72.39 344.36 1.06 -71.33 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -0.32 Total: 15.65 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.89 Total: -13.79 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -1.92 Total: -86.84 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -1.84 Total: -30.15 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.78 Total: -3.41 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -2.55 Total: 2.14 kcal Total: -72.39 1.06 -71.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450731221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.218 kcal (2) G-P(sol) polarization free energy of solvation -72.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds