Wall clock time and date at job start Sat Apr 11 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46979 * 315.97352 * 3 2 1 5 5 C 1.36934 * 120.00350 * 270.93218 * 4 3 2 6 6 H 1.07999 * 119.99937 * 181.56997 * 5 4 3 7 7 C 1.38807 * 119.99779 * 1.56780 * 5 4 3 8 8 N 1.31624 * 120.00284 * 29.80191 * 7 5 4 9 9 Si 1.86801 * 119.99980 * 209.80482 * 7 5 4 10 10 H 1.48500 * 109.47537 * 94.99227 * 9 7 5 11 11 H 1.48505 * 109.47007 * 214.99042 * 9 7 5 12 12 H 1.48496 * 109.47194 * 334.98656 * 9 7 5 13 13 S 1.65608 * 119.99748 * 91.20694 * 4 3 2 14 14 O 1.42108 * 106.39984 * 23.26588 * 13 4 3 15 15 O 1.42101 * 106.40060 * 156.18137 * 13 4 3 16 16 C 1.76194 * 107.22002 * 269.72603 * 13 4 3 17 17 C 1.37836 * 119.94319 * 114.99943 * 16 13 4 18 18 C 1.39684 * 119.88020 * 179.97438 * 17 16 13 19 19 C 1.47599 * 120.12596 * 179.97438 * 18 17 16 20 20 O 1.21487 * 119.99761 * 174.04469 * 19 18 17 21 21 O 1.34729 * 119.99597 * 354.04574 * 19 18 17 22 22 C 1.39727 * 119.75021 * 0.02562 * 18 17 16 23 23 C 1.50703 * 120.06185 * 179.97438 * 22 18 17 24 24 C 1.37800 * 119.87458 * 359.97438 * 22 18 17 25 25 C 1.38653 * 119.93304 * 294.72341 * 16 13 4 26 26 F 1.35097 * 119.87750 * 0.02562 * 25 16 13 27 27 H 4.40644 * 5.51324 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.46902 * 195.97465 * 3 2 1 29 29 H 1.08999 * 109.47233 * 75.97168 * 3 2 1 30 30 H 0.96995 * 120.00417 * 180.02562 * 8 7 5 31 31 H 1.08001 * 120.05517 * 359.95560 * 17 16 13 32 32 H 0.96700 * 116.99622 * 179.97438 * 21 19 18 33 33 H 1.09001 * 109.47425 * 83.39151 * 23 22 18 34 34 H 1.09006 * 109.46649 * 203.39120 * 23 22 18 35 35 H 1.09001 * 109.46998 * 323.38891 * 23 22 18 36 36 H 1.08001 * 119.93337 * 180.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9923 0.9600 5 6 3.3447 -0.6370 2.2656 6 1 3.7290 -1.3622 2.9675 7 6 3.0635 0.6554 2.6870 8 7 2.1102 1.3466 2.0988 9 14 4.0380 1.4136 4.0887 10 1 5.1578 2.2169 3.5355 11 1 3.1489 2.2911 4.8918 12 1 4.5818 0.3357 4.9534 13 16 3.4399 -2.5428 0.4645 14 8 3.6722 -2.4780 -0.9360 15 8 4.3805 -3.0801 1.3842 16 6 1.9521 -3.4616 0.6802 17 6 1.2939 -3.9728 -0.4177 18 6 0.1148 -4.7016 -0.2451 19 6 -0.5947 -5.2510 -1.4170 20 8 -1.5580 -5.9743 -1.2597 21 8 -0.1740 -4.9502 -2.6611 22 6 -0.3910 -4.9076 1.0410 23 6 -1.6629 -5.6922 1.2352 24 6 0.2753 -4.3919 2.1314 25 6 1.4487 -3.6740 1.9545 26 9 2.1006 -3.1750 3.0274 27 1 -1.0498 0.0000 0.0003 28 1 3.0089 0.9888 0.2828 29 1 3.0095 -0.2483 -0.9970 30 1 1.9139 2.2498 2.3930 31 1 1.6891 -3.8099 -1.4095 32 1 -0.6703 -5.3339 -3.3970 33 1 -1.4351 -6.7582 1.2406 34 1 -2.1203 -5.4136 2.1846 35 1 -2.3534 -5.4724 0.4209 36 1 -0.1146 -4.5509 3.1259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490921841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:33 Heat of formation + Delta-G solvation = -121.760045 kcal Electronic energy + Delta-G solvation = -28395.054270 eV Core-core repulsion = 24080.886720 eV Total energy + Delta-G solvation = -4314.167550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.18682 -41.66652 -39.65175 -38.15749 -37.73852 -37.24073 -36.36696 -33.96799 -33.88732 -32.93486 -32.24784 -28.63843 -28.43624 -25.75129 -25.35138 -23.66118 -22.55332 -20.41449 -19.83049 -19.53574 -18.98211 -18.48952 -18.28148 -18.16900 -17.56942 -16.96370 -16.63989 -16.61254 -16.41017 -16.11526 -15.39069 -15.21658 -15.04844 -14.66481 -14.62814 -14.48400 -14.21645 -13.85703 -13.65724 -13.33519 -13.14718 -12.98916 -12.93936 -12.69608 -12.64461 -12.58555 -12.56760 -12.28881 -11.96974 -11.75277 -11.44736 -11.26127 -11.05264 -10.67826 -10.29417 -10.14401 -10.07654 -8.51751 -5.80493 -0.69730 -0.31133 -0.11692 1.21182 1.50345 1.57318 1.66793 1.93907 1.97369 2.26831 2.32192 2.36865 2.70805 2.80192 2.95063 3.14052 3.41609 3.62993 3.76733 3.87947 4.06401 4.17768 4.28244 4.44955 4.52437 4.63504 4.69134 4.73300 4.79931 4.94974 5.05544 5.20619 5.22727 5.36665 5.44678 5.46711 5.61445 6.28500 6.64695 6.91372 7.07802 7.12436 8.43049 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.004720 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.566397 B = 5930.885748 C = 6109.543189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.159 4.159 3 C 0.222 3.778 4 N -0.787 5.787 5 C -0.244 4.244 6 H 0.118 0.882 7 C 0.003 3.997 8 N -0.818 5.818 9 Si 0.991 3.009 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.264 1.264 13 S 2.503 3.497 14 O -1.010 7.010 15 O -1.007 7.007 16 C -0.738 4.738 17 C 0.047 3.953 18 C -0.183 4.183 19 C 0.541 3.459 20 O -0.521 6.521 21 O -0.507 6.507 22 C 0.042 3.958 23 C -0.120 4.120 24 C -0.187 4.187 25 C 0.211 3.789 26 F -0.122 7.122 27 H 0.230 0.770 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.286 0.714 31 H 0.153 0.847 32 H 0.436 0.564 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 -5.114 -1.980 9.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.161 4.161 3 C 0.097 3.903 4 N -0.607 5.607 5 C -0.395 4.395 6 H 0.135 0.865 7 C -0.210 4.210 8 N -0.456 5.456 9 Si 0.812 3.188 10 H -0.188 1.188 11 H -0.197 1.197 12 H -0.188 1.188 13 S 2.604 3.396 14 O -0.999 6.999 15 O -0.997 6.997 16 C -0.816 4.816 17 C 0.028 3.972 18 C -0.185 4.185 19 C 0.387 3.613 20 O -0.413 6.413 21 O -0.321 6.321 22 C 0.041 3.959 23 C -0.175 4.175 24 C -0.206 4.206 25 C 0.190 3.810 26 F -0.100 7.100 27 H 0.246 0.754 28 H 0.139 0.861 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.170 0.830 32 H 0.299 0.701 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.081 -5.602 -2.164 9.285 hybrid contribution -0.696 0.098 0.410 0.814 sum -7.777 -5.504 -1.754 9.688 Atomic orbital electron populations 1.25067 0.96245 1.01843 1.03246 1.23753 0.95213 0.99262 0.97899 1.18814 0.84312 0.95272 0.91876 1.56142 1.69554 1.18849 1.16199 1.20552 1.32746 0.97299 0.88947 0.86461 1.26357 0.96191 0.97330 1.01104 1.70346 1.23050 1.12390 1.39828 0.84933 0.78293 0.78427 0.77098 1.18837 1.19723 1.18781 1.13572 0.78884 0.73857 0.73277 1.93280 1.86832 1.86726 1.33094 1.93313 1.62833 1.79519 1.63989 1.32332 1.30884 1.20837 0.97541 1.21083 0.90813 0.87243 0.98102 1.19235 0.98865 1.07988 0.92395 1.20342 0.80731 0.76967 0.83263 1.90816 1.27494 1.36266 1.86745 1.84583 1.60147 1.70991 1.16390 1.20274 0.95334 0.90580 0.89687 1.21247 0.92060 0.99569 1.04648 1.21324 0.94947 1.02423 1.01896 1.17699 0.90475 0.90763 0.82037 1.91598 1.80271 1.84424 1.53740 0.75352 0.86134 0.89276 0.90339 0.82968 0.70128 0.88818 0.88973 0.88947 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.53 19.25 74.32 1.43 -8.10 16 2 C -0.16 -6.87 11.84 31.13 0.37 -6.50 16 3 C 0.22 9.80 5.41 84.57 0.46 10.26 16 4 N -0.79 -37.36 2.88 -352.50 -1.01 -38.37 16 5 C -0.24 -11.74 8.51 84.03 0.71 -11.03 16 6 H 0.12 5.83 6.61 -2.91 -0.02 5.81 16 7 C 0.00 0.14 4.88 84.86 0.41 0.56 16 8 N -0.82 -36.54 9.34 21.65 0.20 -36.34 16 9 Si 0.99 35.68 29.65 68.60 2.03 37.71 16 10 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 11 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 12 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 13 S 2.50 120.42 5.30 -56.49 -0.30 120.12 16 14 O -1.01 -49.72 15.54 -128.00 -1.99 -51.71 16 15 O -1.01 -53.55 16.21 -128.00 -2.07 -55.62 16 16 C -0.74 -31.43 5.91 22.27 0.13 -31.29 16 17 C 0.05 1.76 9.11 22.52 0.21 1.97 16 18 C -0.18 -5.87 5.87 -20.10 -0.12 -5.99 16 19 C 0.54 14.87 8.20 70.29 0.58 15.44 16 20 O -0.52 -14.53 14.12 19.88 0.28 -14.25 16 21 O -0.51 -11.29 12.69 -56.39 -0.72 -12.01 16 22 C 0.04 1.22 5.91 -19.61 -0.12 1.10 16 23 C -0.12 -2.59 8.73 71.24 0.62 -1.97 16 24 C -0.19 -5.84 9.64 22.27 0.21 -5.63 16 25 C 0.21 8.46 7.22 22.48 0.16 8.62 16 26 F -0.12 -5.30 14.57 44.97 0.66 -4.65 16 27 H 0.23 6.96 7.80 -4.42 -0.03 6.93 16 28 H 0.12 5.32 6.03 -2.39 -0.01 5.31 16 29 H 0.09 3.73 6.99 -2.39 -0.02 3.72 16 30 H 0.29 11.81 8.31 -92.71 -0.77 11.04 16 31 H 0.15 5.65 6.89 -2.91 -0.02 5.63 16 32 H 0.44 4.68 9.11 -74.06 -0.67 4.01 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.09 1.54 8.04 -2.38 -0.02 1.52 16 35 H 0.09 2.16 5.85 -2.39 -0.01 2.15 16 36 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -64.29 333.92 2.64 -61.66 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.49 Total: 26.03 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 5.06 Total: -32.57 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -0.81 Total: -74.71 kcal Atomic # 8 Polarization: -129.09 SS G_CDS: -4.50 Total: -133.59 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.66 Total: -4.65 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 16 Polarization: 120.42 SS G_CDS: -0.30 Total: 120.12 kcal Total: -64.29 2.64 -61.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490921841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.103 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds