Wall clock time and date at job start Sat Apr 11 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46971 * 249.20617 * 3 2 1 5 5 C 1.36885 * 120.00429 * 98.09631 * 4 3 2 6 6 H 1.07999 * 119.99856 * 156.85021 * 5 4 3 7 7 C 1.39004 * 119.99806 * 337.12102 * 5 4 3 8 8 N 1.31403 * 119.99960 * 356.48846 * 7 5 4 9 9 Si 1.86800 * 120.00099 * 176.48317 * 7 5 4 10 10 H 1.48503 * 109.46826 * 90.00193 * 9 7 5 11 11 H 1.48503 * 109.47143 * 210.00082 * 9 7 5 12 12 H 1.48497 * 109.46842 * 330.00229 * 9 7 5 13 13 C 1.34780 * 119.99470 * 278.09077 * 4 3 2 14 14 O 1.21751 * 119.99577 * 177.68710 * 13 4 3 15 15 C 1.46455 * 120.00465 * 357.68722 * 13 4 3 16 16 C 1.36765 * 125.46666 * 187.07417 * 15 13 4 17 17 C 1.37442 * 113.27991 * 179.80122 * 16 15 13 18 18 C 1.50701 * 122.44431 * 180.20107 * 17 16 15 19 19 S 1.81398 * 109.46851 * 270.31137 * 18 17 16 20 20 C 1.81403 * 101.92297 * 180.02562 * 19 18 17 21 21 O 1.42108 * 108.57964 * 294.48766 * 19 18 17 22 22 O 1.42100 * 108.58202 * 65.51543 * 19 18 17 23 23 C 1.33846 * 115.10628 * 0.48749 * 17 16 15 24 24 C 1.50709 * 124.51287 * 179.76256 * 23 17 16 25 25 S 1.70606 * 110.97172 * 359.73114 * 23 17 16 26 26 H 4.40639 * 5.51403 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47088 * 129.20565 * 3 2 1 28 28 H 1.09004 * 109.47243 * 9.20016 * 3 2 1 29 29 H 0.97003 * 120.00112 * 179.97438 * 8 7 5 30 30 H 1.08008 * 123.35752 * 359.95678 * 16 15 13 31 31 H 1.08997 * 109.47445 * 30.31012 * 18 17 16 32 32 H 1.09003 * 109.46884 * 150.31311 * 18 17 16 33 33 H 1.08996 * 109.47092 * 59.99592 * 20 19 18 34 34 H 1.08993 * 109.47230 * 180.02562 * 20 19 18 35 35 H 1.09007 * 109.46807 * 300.00186 * 20 19 18 36 36 H 1.09001 * 109.46633 * 179.97438 * 24 23 17 37 37 H 1.08995 * 109.46782 * 299.98884 * 24 23 17 38 38 H 1.08998 * 109.46824 * 59.99021 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4912 1.2913 5 6 3.5200 -0.3964 2.2592 6 1 4.2063 -0.0865 3.0334 7 6 3.0330 -1.6982 2.2425 8 7 2.1493 -2.0575 1.3388 9 14 3.6348 -2.9369 3.5045 10 1 2.7583 -2.8887 4.7024 11 1 3.5961 -4.3004 2.9174 12 1 5.0283 -2.6063 3.8971 13 6 3.2032 1.8166 1.5261 14 8 3.5688 2.2239 2.6137 15 6 2.8385 2.7669 0.4731 16 6 2.9952 4.1240 0.5398 17 6 2.5724 4.7760 -0.5938 18 6 2.6548 6.2733 -0.7436 19 16 1.1263 7.0279 -0.1232 20 6 1.4417 8.7931 -0.3974 21 8 0.0506 6.6254 -0.9601 22 8 1.0416 6.7946 1.2759 23 6 2.0767 3.9845 -1.5527 24 6 1.5494 4.4748 -2.8767 25 16 2.1221 2.3468 -1.0767 26 1 -1.0501 0.0001 -0.0002 27 1 3.0090 0.6504 -0.7963 28 1 3.0098 -1.0136 -0.1643 29 1 1.8097 -2.9661 1.3268 30 1 3.4121 4.6322 1.3968 31 1 3.5035 6.6494 -0.1724 32 1 2.7840 6.5266 -1.7958 33 1 1.6064 8.9720 -1.4599 34 1 0.5824 9.3724 -0.0599 35 1 2.3262 9.0955 0.1634 36 1 1.2081 3.6255 -3.4686 37 1 0.7168 5.1571 -2.7059 38 1 2.3423 4.9960 -3.4130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490994329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:36 Heat of formation + Delta-G solvation = -20.570436 kcal Electronic energy + Delta-G solvation = -25244.758052 eV Core-core repulsion = 21501.191589 eV Total energy + Delta-G solvation = -3743.566463 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73854 -39.44426 -37.92736 -37.18643 -36.91701 -34.31052 -33.20276 -33.00359 -31.14833 -30.13775 -28.77596 -27.59524 -26.08777 -24.23937 -21.74726 -19.92350 -19.75757 -19.28981 -19.18394 -18.51560 -17.61322 -17.33844 -17.04697 -16.82186 -16.43131 -16.09617 -16.02389 -15.47698 -14.91020 -14.79101 -14.37674 -14.23544 -14.13969 -13.88172 -13.86295 -13.72209 -13.40863 -13.22306 -13.03448 -12.95885 -12.88041 -12.85125 -12.66024 -12.61476 -12.14275 -12.06071 -11.68199 -11.37908 -11.32890 -11.17956 -10.83278 -10.63055 -10.01552 -9.48307 -9.19999 -8.37275 -6.07979 -0.96258 -0.37378 0.54207 1.00315 1.28063 1.40215 1.45689 1.52506 1.91452 1.96187 2.18602 2.30847 2.40196 2.83099 3.02481 3.04969 3.14866 3.66705 3.67603 3.84519 4.01604 4.07775 4.14766 4.29455 4.40271 4.45401 4.62498 4.72283 4.83967 4.92356 4.94565 5.00559 5.14837 5.22434 5.32633 5.35721 5.47472 5.96715 6.33723 6.98984 7.02596 7.20823 7.78954 8.58257 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.003492 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.191268 B = 8016.768870 C = 8624.166740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.160 4.160 3 C 0.222 3.778 4 N -0.439 5.439 5 C -0.345 4.345 6 H 0.080 0.920 7 C 0.003 3.997 8 N -0.875 5.875 9 Si 0.998 3.002 10 H -0.280 1.280 11 H -0.262 1.262 12 H -0.269 1.269 13 C 0.498 3.502 14 O -0.623 6.623 15 C -0.282 4.282 16 C -0.072 4.072 17 C -0.141 4.141 18 C -0.529 4.529 19 S 2.395 3.605 20 C -0.629 4.629 21 O -0.974 6.974 22 O -0.996 6.996 23 C -0.221 4.221 24 C -0.098 4.098 25 S 0.270 5.730 26 H 0.238 0.762 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.278 0.722 30 H 0.140 0.860 31 H 0.166 0.834 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 16.546 -14.694 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.163 4.163 3 C 0.098 3.902 4 N -0.155 5.155 5 C -0.472 4.472 6 H 0.098 0.902 7 C -0.200 4.200 8 N -0.512 5.512 9 Si 0.821 3.179 10 H -0.206 1.206 11 H -0.186 1.186 12 H -0.193 1.193 13 C 0.289 3.711 14 O -0.512 6.512 15 C -0.402 4.402 16 C -0.105 4.105 17 C -0.154 4.154 18 C -0.660 4.660 19 S 2.584 3.416 20 C -0.782 4.782 21 O -0.971 6.971 22 O -0.994 6.994 23 C -0.342 4.342 24 C -0.156 4.156 25 S 0.542 5.458 26 H 0.255 0.745 27 H 0.101 0.899 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.184 0.816 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.713 14.765 -14.570 20.814 hybrid contribution 1.118 0.718 1.666 2.131 sum -0.595 15.483 -12.904 20.165 Atomic orbital electron populations 1.25193 0.96288 1.03015 0.99883 1.23012 0.94604 0.98329 1.00390 1.18728 0.85630 1.02071 0.83816 1.43742 1.54488 1.03844 1.13453 1.19724 1.26964 0.92082 1.08441 0.90199 1.26177 0.94971 0.99291 0.99561 1.69993 1.27191 1.20301 1.33742 0.84871 0.78552 0.77060 0.77448 1.20638 1.18614 1.19303 1.17467 0.84135 0.82488 0.87030 1.90594 1.55241 1.78703 1.26697 1.24617 1.15468 0.98538 1.01623 1.20651 0.99164 0.91686 0.99040 1.17687 1.08264 0.95274 0.94157 1.28999 1.21782 0.98783 1.16391 1.08398 0.77996 0.80723 0.74526 1.30060 1.13848 1.19555 1.14770 1.93507 1.51708 1.82489 1.69394 1.93559 1.86767 1.85859 1.33166 1.25424 1.04085 1.01828 1.02838 1.20738 1.02654 1.02987 0.89208 1.83792 1.54792 1.01351 1.05902 0.74537 0.89934 0.85464 0.91120 0.84240 0.81589 0.80086 0.81735 0.84528 0.82810 0.90194 0.88563 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.09 19.25 74.32 1.43 -7.66 16 2 C -0.16 -7.23 9.14 31.12 0.28 -6.95 16 3 C 0.22 10.32 4.72 84.57 0.40 10.72 16 4 N -0.44 -24.12 2.61 -650.16 -1.70 -25.81 16 5 C -0.34 -19.95 9.29 84.09 0.78 -19.17 16 6 H 0.08 4.91 7.41 -2.91 -0.02 4.88 16 7 C 0.00 0.17 5.24 84.94 0.45 0.62 16 8 N -0.88 -44.92 8.93 21.67 0.19 -44.72 16 9 Si 1.00 42.27 29.55 68.60 2.03 44.30 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 13 C 0.50 27.79 7.50 86.38 0.65 28.43 16 14 O -0.62 -39.31 16.56 -4.51 -0.07 -39.39 16 15 C -0.28 -12.78 6.23 24.07 0.15 -12.63 16 16 C -0.07 -2.82 9.81 21.74 0.21 -2.61 16 17 C -0.14 -4.14 5.04 -21.05 -0.11 -4.25 16 18 C -0.53 -8.64 5.76 71.24 0.41 -8.22 16 19 S 2.39 47.28 5.34 -56.49 -0.30 46.98 16 20 C -0.63 -3.88 10.62 113.37 1.20 -2.68 16 21 O -0.97 -25.23 16.68 -127.37 -2.12 -27.35 16 22 O -1.00 -32.11 18.10 -127.37 -2.31 -34.41 16 23 C -0.22 -6.26 6.28 24.69 0.15 -6.10 16 24 C -0.10 -1.84 9.37 71.24 0.67 -1.17 16 25 S 0.27 9.46 16.13 -56.49 -0.91 8.54 16 26 H 0.24 7.40 7.80 -4.41 -0.03 7.37 16 27 H 0.08 3.38 4.47 -21.36 -0.10 3.28 16 28 H 0.13 6.17 6.09 -2.39 -0.01 6.15 16 29 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 30 H 0.14 5.60 8.06 -2.91 -0.02 5.58 16 31 H 0.17 1.80 8.13 -2.39 -0.02 1.78 16 32 H 0.18 1.20 7.27 -2.39 -0.02 1.19 16 33 H 0.16 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.14 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.08 1.36 8.11 -2.39 -0.02 1.34 16 37 H 0.10 1.84 6.67 -2.39 -0.02 1.83 16 38 H 0.11 1.28 7.89 -2.39 -0.02 1.26 16 Total: -1.00 -89.30 348.10 2.50 -86.80 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.01 Total: 16.74 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 6.68 Total: -31.67 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.50 Total: -70.54 kcal Atomic # 8 Polarization: -96.65 SS G_CDS: -4.50 Total: -101.15 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 56.73 SS G_CDS: -1.21 Total: 55.52 kcal Total: -89.30 2.50 -86.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.225 kcal (2) G-P(sol) polarization free energy of solvation -89.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds