Wall clock time and date at job start Sat Apr 11 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00016 * 2 1 4 4 H 1.48507 * 109.46974 * 240.00012 * 3 2 1 5 5 H 1.48506 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47433 * 120.00025 * 3 2 1 7 7 C 1.37879 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99681 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.46047 * 179.97438 * 9 7 2 11 11 C 1.53194 * 109.30970 * 178.62720 * 10 9 7 12 12 N 1.46923 * 108.77322 * 54.64020 * 11 10 9 13 13 C 1.34784 * 120.62964 * 126.36706 * 12 11 10 14 14 O 1.21279 * 119.99925 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99961 * 179.97438 * 13 12 11 16 16 N 1.46497 * 109.47128 * 180.02562 * 15 13 12 17 17 C 1.35016 * 126.03754 * 124.71441 * 16 15 13 18 18 C 1.35366 * 107.73252 * 179.87219 * 17 16 15 19 19 Br 1.89092 * 126.04421 * 180.16821 * 18 17 16 20 20 C 1.39919 * 107.90851 * 0.38820 * 18 17 16 21 21 N 1.30851 * 108.20737 * 359.75658 * 20 18 17 22 22 C 1.46927 * 118.73985 * 306.63925 * 12 11 10 23 23 C 1.52758 * 109.00682 * 53.30967 * 22 12 11 24 24 H 0.96992 * 119.99887 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46387 * 299.97575 * 9 7 2 26 26 H 1.08996 * 109.49638 * 58.68177 * 10 9 7 27 27 H 1.08997 * 109.52468 * 298.59625 * 10 9 7 28 28 H 1.08998 * 109.58766 * 294.84948 * 11 10 9 29 29 H 1.09003 * 109.70123 * 174.49100 * 11 10 9 30 30 H 1.09004 * 109.46932 * 300.00223 * 15 13 12 31 31 H 1.08997 * 109.47392 * 59.99562 * 15 13 12 32 32 H 1.08000 * 126.13103 * 359.97438 * 17 16 15 33 33 H 1.07990 * 125.89658 * 179.73740 * 20 18 17 34 34 H 1.09003 * 109.58790 * 173.15076 * 22 12 11 35 35 H 1.09007 * 109.58432 * 293.56887 * 22 12 11 36 36 H 1.08998 * 109.56153 * 185.55612 * 23 22 12 37 37 H 1.09003 * 109.38437 * 65.51806 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2459 -3.6622 0.0015 11 6 1.4768 -4.9866 0.0373 12 7 0.5218 -5.0092 -1.0790 13 6 0.5111 -6.0353 -1.9529 14 8 1.2950 -6.9514 -1.8220 15 6 -0.4750 -6.0443 -3.0925 16 7 -0.2859 -7.2569 -3.8923 17 6 -1.2360 -8.1694 -4.1884 18 6 -0.6609 -9.1325 -4.9461 19 35 -1.5265 -10.6587 -5.6509 20 6 0.6885 -8.8014 -5.1112 21 7 0.9140 -7.6776 -4.4801 22 6 -0.4171 -3.8890 -1.2283 23 6 0.3694 -2.5796 -1.2466 24 1 -0.4849 0.8400 -0.0004 25 1 0.6252 -2.5564 0.8922 26 1 2.8889 -3.5911 0.8787 27 1 2.8556 -3.6198 -0.9010 28 1 0.9379 -5.0708 0.9810 29 1 2.1737 -5.8190 -0.0612 30 1 -1.4898 -6.0262 -2.6949 31 1 -0.3145 -5.1667 -3.7187 32 1 -2.2698 -8.1359 -3.8779 33 1 1.4181 -9.3747 -5.6639 34 1 -0.9680 -3.9960 -2.1627 35 1 -1.1137 -3.8820 -0.3898 36 1 -0.3231 -1.7380 -1.2577 37 1 0.9964 -2.5466 -2.1376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542912995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:46 Heat of formation + Delta-G solvation = 46.730365 kcal Electronic energy + Delta-G solvation = -21424.477726 eV Core-core repulsion = 18056.898132 eV Total energy + Delta-G solvation = -3367.579594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.46191 -39.71597 -36.96663 -33.81701 -33.52337 -31.78542 -31.38231 -30.31058 -29.41235 -27.48216 -26.00395 -23.20026 -22.52409 -21.53705 -21.10571 -19.97036 -18.54055 -17.52421 -17.03556 -16.26653 -15.69428 -15.48970 -14.69990 -14.60906 -14.31052 -13.85131 -13.42286 -13.33144 -13.24690 -13.01186 -12.71835 -12.64308 -12.16232 -11.75267 -11.42116 -11.17320 -11.09718 -10.98733 -10.74239 -10.49814 -10.26336 -10.21576 -10.00459 -9.73920 -9.42157 -9.27942 -9.05709 -8.57988 -8.46742 -8.17659 -6.11588 -4.17495 1.41874 1.59728 2.37560 2.47519 2.67983 3.23814 3.24994 3.29776 3.33191 4.30700 4.34573 4.46073 4.53791 4.80124 4.91911 5.17260 5.27884 5.36636 5.42027 5.67201 5.79976 5.90925 6.04136 6.11599 6.22325 6.30858 6.53143 6.56270 6.77392 6.91806 7.00219 7.13835 7.42679 7.55564 7.69697 7.81146 7.93471 8.30251 8.31172 8.85618 9.48136 10.94086 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.002150 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.748252 B =13017.235908 C =13232.177169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.114 3.886 12 N -0.597 5.597 13 C 0.498 3.502 14 O -0.528 6.528 15 C 0.113 3.887 16 N -0.348 5.348 17 C 0.094 3.906 18 C -0.242 4.242 19 Br -0.028 7.028 20 C 0.069 3.931 21 N -0.249 5.249 22 C 0.100 3.900 23 C -0.126 4.126 24 H 0.261 0.739 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.183 0.817 33 H 0.189 0.811 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 -17.510 -9.959 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.008 4.008 12 N -0.330 5.330 13 C 0.283 3.717 14 O -0.405 6.405 15 C -0.011 4.011 16 N -0.128 5.128 17 C -0.055 4.055 18 C -0.334 4.334 19 Br 0.055 6.945 20 C -0.120 4.120 21 N -0.069 5.069 22 C -0.021 4.021 23 C -0.165 4.165 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.200 0.800 33 H 0.206 0.794 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.925 -17.367 -9.724 21.074 hybrid contribution -0.078 0.825 -0.020 0.829 sum -7.002 -16.542 -9.743 20.436 Atomic orbital electron populations 1.69803 1.05852 1.26679 1.50857 1.24951 0.94893 0.99091 0.94973 0.86665 0.79649 0.83064 0.78688 1.20307 1.21274 1.20263 1.21161 0.92969 0.90515 1.50441 0.92707 1.18625 0.92623 0.91801 0.93881 1.22016 0.98950 0.94028 1.01196 1.21726 0.91621 0.99923 0.87505 1.48234 1.36420 1.20545 1.27845 1.20251 0.85206 0.83008 0.83205 1.90743 1.40235 1.35928 1.73574 1.21725 1.01294 0.85608 0.92518 1.48153 1.06683 1.18582 1.39427 1.22385 0.96109 0.89417 0.97625 1.21701 0.96451 1.00168 1.15048 1.96585 1.78350 1.34657 1.84925 1.23882 0.94533 0.94681 0.98942 1.77683 1.03220 1.13890 1.12070 1.22038 0.91749 0.87812 1.00547 1.21974 1.00211 0.94426 0.99865 0.92863 0.95376 0.91973 0.92852 0.91980 0.90284 0.85537 0.86146 0.80000 0.79376 0.91804 0.91383 0.87494 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.52 11.30 55.43 0.63 -22.89 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.20 8.56 -34.44 -0.29 -13.49 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.05 1.11 2.07 -91.73 -0.19 0.92 16 10 C -0.12 -2.43 5.30 -26.61 -0.14 -2.57 16 11 C 0.11 1.97 6.44 -3.71 -0.02 1.95 16 12 N -0.60 -9.70 2.98 -173.03 -0.52 -10.22 16 13 C 0.50 8.00 7.73 -10.98 -0.08 7.92 16 14 O -0.53 -10.49 15.12 5.56 0.08 -10.40 16 15 C 0.11 1.33 5.34 -5.20 -0.03 1.30 16 16 N -0.35 -4.57 3.40 -62.52 -0.21 -4.78 16 17 C 0.09 1.01 11.41 -17.18 -0.20 0.81 16 18 C -0.24 -2.75 6.53 -39.98 -0.26 -3.01 16 19 Br -0.03 -0.26 34.08 -68.01 -2.32 -2.58 16 20 C 0.07 0.86 12.01 -17.34 -0.21 0.65 16 21 N -0.25 -3.83 11.64 30.64 0.36 -3.48 16 22 C 0.10 1.55 6.31 -3.93 -0.02 1.52 16 23 C -0.13 -2.56 5.14 -26.84 -0.14 -2.70 16 24 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 30 H 0.13 0.98 7.88 -51.93 -0.41 0.57 16 31 H 0.12 1.28 7.68 -51.93 -0.40 0.88 16 32 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.06 0.76 5.94 -51.93 -0.31 0.45 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.11 2.43 6.03 -51.93 -0.31 2.12 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -30.81 327.05 -8.47 -39.28 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.72 Total: -0.01 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.68 Total: -5.18 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.25 Total: -41.37 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.32 Total: -2.58 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.81 -8.47 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542912995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.015 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds