Wall clock time and date at job start Sat Apr 11 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47054 * 2 1 4 4 H 1.08991 * 109.47408 * 54.19940 * 3 2 1 5 5 C 1.50698 * 109.47071 * 174.20565 * 3 2 1 6 6 H 1.08003 * 120.00136 * 119.99972 * 5 3 2 7 7 C 1.37877 * 119.99682 * 299.99340 * 5 3 2 8 8 N 1.31509 * 120.00391 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99841 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47187 * 60.00476 * 9 7 5 11 11 H 1.48506 * 109.47445 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47578 * 300.00064 * 9 7 5 13 13 N 1.46905 * 109.46830 * 294.19871 * 3 2 1 14 14 C 1.46896 * 110.99675 * 151.26804 * 13 3 2 15 15 C 1.50704 * 109.46816 * 184.63323 * 14 13 3 16 16 O 1.21277 * 120.00327 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99549 * 180.02562 * 15 14 13 18 18 C 1.39443 * 119.99387 * 184.95899 * 17 15 14 19 19 C 1.39039 * 119.68117 * 174.72479 * 18 17 15 20 20 C 1.38355 * 119.11029 * 180.02562 * 19 18 17 21 21 C 1.38911 * 118.48558 * 359.97438 * 20 19 18 22 22 Br 1.89096 * 120.35239 * 179.97438 * 21 20 19 23 23 C 1.38152 * 119.29319 * 0.02562 * 21 20 19 24 24 N 1.31935 * 120.83548 * 0.02562 * 23 21 20 25 25 H 1.08993 * 109.46993 * 305.66367 * 1 2 3 26 26 H 1.08998 * 109.47067 * 65.67059 * 1 2 3 27 27 H 1.09005 * 109.47016 * 185.66902 * 1 2 3 28 28 H 1.08999 * 109.47280 * 239.99161 * 2 1 3 29 29 H 1.09003 * 109.46785 * 119.99751 * 2 1 3 30 30 H 0.97005 * 120.00305 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99667 * 27.31952 * 13 3 2 32 32 H 1.09005 * 109.46957 * 64.63556 * 14 13 3 33 33 H 1.08994 * 109.47466 * 304.63420 * 14 13 3 34 34 H 0.96991 * 120.00497 * 4.96550 * 17 15 14 35 35 H 1.08004 * 120.44652 * 0.27726 * 19 18 17 36 36 H 1.08001 * 120.75731 * 180.02562 * 20 19 18 37 37 H 1.08006 * 119.58431 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5944 1.9854 0.8334 5 6 3.5401 1.4449 0.1434 6 1 4.1556 1.8859 -0.6268 7 6 4.1269 0.8842 1.2580 8 7 3.3776 0.3469 2.1957 9 14 5.9864 0.8879 1.4362 10 1 6.4810 2.2881 1.4366 11 1 6.3627 0.2304 2.7136 12 1 6.5941 0.1485 0.3007 13 7 1.6679 2.0933 -1.2633 14 6 1.5005 3.5412 -1.0802 15 6 1.0100 4.1566 -2.3654 16 8 0.8183 3.4579 -3.3380 17 7 0.7844 5.4837 -2.4339 18 6 0.2331 6.0383 -3.5884 19 6 -0.0991 7.3882 -3.6128 20 6 -0.6458 7.9261 -4.7643 21 6 -0.8420 7.0914 -5.8572 22 35 -1.5863 7.7709 -7.4572 23 6 -0.4885 5.7592 -5.7622 24 7 0.0301 5.2747 -4.6500 25 1 -0.3633 0.5991 0.8349 26 1 -0.3633 0.4234 -0.9364 27 1 -0.3633 -1.0227 0.1015 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7905 -0.0479 2.9797 31 1 0.8338 1.6791 -1.6515 32 1 2.4573 3.9858 -0.8064 33 1 0.7743 3.7257 -0.2886 34 1 1.0055 6.0528 -1.6803 35 1 0.0713 8.0095 -2.7460 36 1 -0.9133 8.9714 -4.8127 37 1 -0.6394 5.1059 -6.6089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567748107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:49 Heat of formation + Delta-G solvation = 18.027793 kcal Electronic energy + Delta-G solvation = -20834.032857 eV Core-core repulsion = 17465.208626 eV Total energy + Delta-G solvation = -3368.824231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94853 -39.07927 -36.20762 -34.99722 -33.07990 -32.48832 -31.80903 -31.14351 -29.19033 -27.25597 -25.42797 -24.23449 -23.08885 -22.37781 -20.39777 -19.65432 -18.37494 -17.09851 -16.38251 -16.24798 -15.76321 -15.59110 -14.98725 -14.67857 -14.52105 -14.11085 -13.71351 -13.47864 -13.26048 -12.58380 -12.47240 -12.28282 -12.21121 -11.77583 -11.37113 -11.18552 -10.86251 -10.77128 -10.66846 -10.45193 -10.18057 -10.10350 -9.97972 -9.79370 -9.66779 -9.17336 -9.06939 -8.42640 -8.36895 -7.31728 -5.99947 -4.04513 0.63093 0.92319 1.30277 2.73709 2.77869 3.32373 3.37009 3.40952 3.56642 4.12167 4.42341 4.46495 4.57133 4.59306 5.00925 5.24805 5.26682 5.33585 5.45337 5.54866 5.81341 5.89125 5.96915 6.16871 6.17623 6.40652 6.45766 6.83051 6.97940 7.02130 7.13321 7.39973 7.74666 7.78814 7.88056 8.19269 8.30438 8.37801 8.68072 9.03203 9.60735 11.05253 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.002075 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.304251 B =13493.706945 C =13947.948811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.671 5.671 14 C 0.055 3.945 15 C 0.499 3.501 16 O -0.453 6.453 17 N -0.665 5.665 18 C 0.386 3.614 19 C -0.209 4.209 20 C -0.018 4.018 21 C -0.190 4.190 22 Br -0.044 7.044 23 C 0.172 3.828 24 N -0.468 5.468 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.260 0.740 31 H 0.330 0.670 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.419 0.581 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.529 18.642 -13.572 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.113 3.887 4 H 0.023 0.977 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.305 5.305 14 C -0.078 4.078 15 C 0.285 3.715 16 O -0.319 6.319 17 N -0.313 5.313 18 C 0.154 3.846 19 C -0.234 4.234 20 C -0.045 4.045 21 C -0.273 4.273 22 Br 0.040 6.960 23 C 0.011 3.989 24 N -0.183 5.183 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.256 0.744 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.992 17.299 -14.743 25.247 hybrid contribution 0.224 1.136 1.398 1.815 sum -10.767 18.434 -13.344 25.176 Atomic orbital electron populations 1.21893 0.99528 0.99902 0.99558 1.21795 0.91309 1.00143 1.03325 1.19231 0.95688 0.90176 0.83589 0.97698 1.21190 0.91181 1.36941 1.04181 0.91998 1.24957 0.98156 0.95529 0.95831 1.69856 1.34820 1.39352 1.09572 0.86591 0.85655 0.78140 0.77162 1.20442 1.21464 1.20254 1.60529 1.39787 0.98799 1.31344 1.21792 1.01594 0.93496 0.90949 1.21612 0.77303 0.80665 0.91887 1.90787 1.44640 1.59716 1.36794 1.44040 1.61881 1.10193 1.15147 1.18757 0.90090 0.88682 0.87120 1.21523 1.06780 0.94461 1.00601 1.21279 0.92997 0.99845 0.90391 1.22784 1.11672 0.97731 0.95117 1.96705 1.83082 1.86592 1.29621 1.22804 0.89933 0.91053 0.95103 1.67936 1.15079 1.36599 0.98665 0.93914 0.94544 0.94222 0.93807 0.88031 0.92962 0.85146 0.87715 0.93159 0.74379 0.83706 0.83676 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.66 37.16 0.36 -2.58 16 2 C -0.13 -2.98 5.33 -26.73 -0.14 -3.12 16 3 C 0.22 5.32 2.03 -68.86 -0.14 5.18 16 4 H 0.01 0.14 7.67 -51.93 -0.40 -0.26 16 5 C -0.50 -13.36 8.78 -34.44 -0.30 -13.66 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.85 11.29 55.43 0.63 -24.23 16 9 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -14.35 6.02 -109.22 -0.66 -15.01 16 14 C 0.05 0.94 6.04 -4.98 -0.03 0.91 16 15 C 0.50 8.16 7.82 -10.98 -0.09 8.07 16 16 O -0.45 -9.16 14.36 5.56 0.08 -9.09 16 17 N -0.67 -8.04 5.39 -11.42 -0.06 -8.10 16 18 C 0.39 4.83 7.42 -154.68 -1.15 3.68 16 19 C -0.21 -1.84 9.94 -39.24 -0.39 -2.23 16 20 C -0.02 -0.15 9.93 -39.29 -0.39 -0.54 16 21 C -0.19 -1.86 6.25 -39.36 -0.25 -2.11 16 22 Br -0.04 -0.37 33.73 -68.01 -2.29 -2.67 16 23 C 0.17 2.04 10.93 -17.54 -0.19 1.85 16 24 N -0.47 -6.95 7.89 -12.34 -0.10 -7.05 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.66 6.67 -51.93 -0.35 0.31 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.33 6.89 6.10 -39.29 -0.24 6.65 16 32 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.05 0.79 7.94 -51.93 -0.41 0.38 16 34 H 0.42 3.35 8.70 -40.82 -0.36 2.99 16 35 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.17 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -31.93 334.83 -9.75 -41.68 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.56 Total: 6.46 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.80 Total: -3.13 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.19 Total: -54.39 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.29 Total: -2.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.93 -9.75 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567748107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.705 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds