Wall clock time and date at job start Sat Apr 11 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47054 * 2 1 4 4 H 1.08991 * 109.47408 * 54.19940 * 3 2 1 5 5 C 1.50698 * 109.47071 * 174.20565 * 3 2 1 6 6 H 1.08003 * 120.00136 * 119.99972 * 5 3 2 7 7 C 1.37877 * 119.99682 * 299.99340 * 5 3 2 8 8 N 1.31509 * 120.00391 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99841 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47187 * 60.00476 * 9 7 5 11 11 H 1.48506 * 109.47445 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47578 * 300.00064 * 9 7 5 13 13 N 1.46905 * 109.46830 * 294.19871 * 3 2 1 14 14 C 1.46896 * 110.99675 * 151.26804 * 13 3 2 15 15 C 1.50704 * 109.46816 * 184.63323 * 14 13 3 16 16 O 1.21277 * 120.00327 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99549 * 180.02562 * 15 14 13 18 18 C 1.39443 * 119.99387 * 184.95899 * 17 15 14 19 19 C 1.39039 * 119.68117 * 174.72479 * 18 17 15 20 20 C 1.38355 * 119.11029 * 180.02562 * 19 18 17 21 21 C 1.38911 * 118.48558 * 359.97438 * 20 19 18 22 22 Br 1.89096 * 120.35239 * 179.97438 * 21 20 19 23 23 C 1.38152 * 119.29319 * 0.02562 * 21 20 19 24 24 N 1.31935 * 120.83548 * 0.02562 * 23 21 20 25 25 H 1.08993 * 109.46993 * 305.66367 * 1 2 3 26 26 H 1.08998 * 109.47067 * 65.67059 * 1 2 3 27 27 H 1.09005 * 109.47016 * 185.66902 * 1 2 3 28 28 H 1.08999 * 109.47280 * 239.99161 * 2 1 3 29 29 H 1.09003 * 109.46785 * 119.99751 * 2 1 3 30 30 H 0.97005 * 120.00305 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99667 * 27.31952 * 13 3 2 32 32 H 1.09005 * 109.46957 * 64.63556 * 14 13 3 33 33 H 1.08994 * 109.47466 * 304.63420 * 14 13 3 34 34 H 0.96991 * 120.00497 * 4.96550 * 17 15 14 35 35 H 1.08004 * 120.44652 * 0.27726 * 19 18 17 36 36 H 1.08001 * 120.75731 * 180.02562 * 20 19 18 37 37 H 1.08006 * 119.58431 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5944 1.9854 0.8334 5 6 3.5401 1.4449 0.1434 6 1 4.1556 1.8859 -0.6268 7 6 4.1269 0.8842 1.2580 8 7 3.3776 0.3469 2.1957 9 14 5.9864 0.8879 1.4362 10 1 6.4810 2.2881 1.4366 11 1 6.3627 0.2304 2.7136 12 1 6.5941 0.1485 0.3007 13 7 1.6679 2.0933 -1.2633 14 6 1.5005 3.5412 -1.0802 15 6 1.0100 4.1566 -2.3654 16 8 0.8183 3.4579 -3.3380 17 7 0.7844 5.4837 -2.4339 18 6 0.2331 6.0383 -3.5884 19 6 -0.0991 7.3882 -3.6128 20 6 -0.6458 7.9261 -4.7643 21 6 -0.8420 7.0914 -5.8572 22 35 -1.5863 7.7709 -7.4572 23 6 -0.4885 5.7592 -5.7622 24 7 0.0301 5.2747 -4.6500 25 1 -0.3633 0.5991 0.8349 26 1 -0.3633 0.4234 -0.9364 27 1 -0.3633 -1.0227 0.1015 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7905 -0.0479 2.9797 31 1 0.8338 1.6791 -1.6515 32 1 2.4573 3.9858 -0.8064 33 1 0.7743 3.7257 -0.2886 34 1 1.0055 6.0528 -1.6803 35 1 0.0713 8.0095 -2.7460 36 1 -0.9133 8.9714 -4.8127 37 1 -0.6394 5.1059 -6.6089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567748107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:49 Heat of formation + Delta-G solvation = -3.183118 kcal Electronic energy + Delta-G solvation = -20834.952631 eV Core-core repulsion = 17465.208626 eV Total energy + Delta-G solvation = -3369.744005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.89825 -40.22551 -37.92553 -36.10302 -34.42729 -33.86698 -32.97105 -32.49666 -30.14732 -28.93209 -27.01086 -25.15073 -24.52150 -23.63179 -21.61593 -21.42641 -19.31140 -18.44861 -18.18878 -17.12973 -16.86510 -16.79525 -16.51759 -16.11884 -15.63568 -15.43780 -15.15097 -14.82916 -14.29543 -14.12267 -13.89771 -13.72390 -13.18617 -13.10890 -13.03106 -12.74994 -12.61913 -12.52090 -11.96267 -11.75502 -11.53220 -11.50758 -11.39882 -11.12404 -11.06699 -10.83526 -10.41389 -10.14886 -9.29981 -9.03561 -8.05191 -6.17041 -0.21340 0.18185 0.54943 1.44119 1.46425 1.53605 1.58480 1.74797 2.46018 2.69854 3.19010 3.23880 3.68493 3.75286 3.79100 3.85569 4.02382 4.43279 4.47535 4.54983 4.56936 4.60242 4.67573 4.71470 4.85757 5.08402 5.08913 5.20616 5.34623 5.53923 5.59176 5.74999 5.87002 6.05460 6.34681 6.47616 6.82947 6.91230 6.95239 7.24212 7.51844 8.97700 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.002075 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.304251 B =13493.706945 C =13947.948811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.227 3.773 4 H -0.013 1.013 5 C -0.514 4.514 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.683 5.683 14 C 0.056 3.944 15 C 0.508 3.492 16 O -0.500 6.500 17 N -0.649 5.649 18 C 0.355 3.645 19 C -0.186 4.186 20 C -0.015 4.015 21 C -0.184 4.184 22 Br -0.029 7.029 23 C 0.150 3.850 24 N -0.515 5.515 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.438 0.562 35 H 0.185 0.815 36 H 0.180 0.820 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 21.090 -13.635 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.120 3.880 4 H 0.005 0.995 5 C -0.553 4.553 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.205 1.205 13 N -0.317 5.317 14 C -0.077 4.077 15 C 0.294 3.706 16 O -0.370 6.370 17 N -0.298 5.298 18 C 0.124 3.876 19 C -0.210 4.210 20 C -0.042 4.042 21 C -0.268 4.268 22 Br 0.055 6.945 23 C -0.009 4.009 24 N -0.231 5.231 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.279 0.721 35 H 0.202 0.798 36 H 0.197 0.803 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.491 19.814 -14.812 27.277 hybrid contribution 0.314 0.487 1.328 1.449 sum -11.177 20.301 -13.484 26.812 Atomic orbital electron populations 1.21749 0.96372 1.01254 1.00309 1.21647 0.94163 0.99256 1.01230 1.18999 0.94276 0.90621 0.84122 0.99529 1.21430 0.92704 1.37111 1.04033 0.93299 1.25627 1.02078 0.95207 0.95583 1.69971 1.36243 1.39692 1.09828 0.85677 0.80925 0.78405 0.76953 1.19523 1.20943 1.20523 1.60363 1.40294 1.01131 1.29885 1.21783 1.02342 0.91192 0.92385 1.21285 0.76727 0.81923 0.90648 1.90772 1.47074 1.61251 1.37927 1.43637 1.61283 1.08845 1.16072 1.19045 0.91776 0.90112 0.86704 1.21883 1.04300 0.92888 1.01923 1.21735 0.91887 1.01176 0.89434 1.22925 1.10467 0.97199 0.96161 1.96727 1.82752 1.86084 1.28963 1.22864 0.91045 0.92294 0.94733 1.67755 1.16409 1.38801 1.00101 0.93753 0.93235 0.92448 0.95049 0.90807 0.92963 0.84984 0.87703 0.91115 0.72090 0.79756 0.80268 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 9.66 71.98 0.70 -4.64 16 2 C -0.12 -5.92 5.33 30.59 0.16 -5.76 16 3 C 0.23 11.20 2.03 44.17 0.09 11.29 16 4 H -0.01 -0.67 7.67 -2.39 -0.02 -0.68 16 5 C -0.51 -28.14 8.78 25.60 0.22 -27.91 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.92 -51.43 11.29 21.45 0.24 -51.19 16 9 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.68 -29.63 6.02 -499.47 -3.00 -32.64 16 14 C 0.06 1.91 6.04 85.56 0.52 2.42 16 15 C 0.51 16.55 7.82 87.66 0.69 17.24 16 16 O -0.50 -20.70 14.36 -3.02 -0.04 -20.75 16 17 N -0.65 -14.87 5.39 -308.42 -1.66 -16.53 16 18 C 0.36 8.41 7.42 132.91 0.99 9.39 16 19 C -0.19 -2.67 9.94 22.49 0.22 -2.44 16 20 C -0.02 -0.20 9.93 22.46 0.22 0.02 16 21 C -0.18 -3.29 6.25 22.41 0.14 -3.15 16 22 Br -0.03 -0.44 33.73 -20.37 -0.69 -1.13 16 23 C 0.15 3.55 10.93 84.66 0.93 4.48 16 24 N -0.52 -15.36 7.89 -192.95 -1.52 -16.88 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.75 6.67 -2.39 -0.02 1.74 16 27 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 3.94 5.94 -2.39 -0.01 3.92 16 30 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 31 H 0.33 14.02 6.10 -89.69 -0.55 13.47 16 32 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 33 H 0.07 2.15 7.94 -2.39 -0.02 2.13 16 34 H 0.44 6.03 8.70 -92.72 -0.81 5.22 16 35 H 0.19 1.10 8.06 -2.91 -0.02 1.07 16 36 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -70.87 334.83 0.43 -70.44 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.24 Total: 21.08 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 5.32 Total: 2.12 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -5.95 Total: -117.23 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.04 Total: -20.75 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -0.69 Total: -1.13 kcal Total: -70.87 0.43 -70.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567748107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.259 kcal (2) G-P(sol) polarization free energy of solvation -70.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds