Wall clock time and date at job start Sat Apr 11 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47322 * 2 1 4 4 H 1.08993 * 109.46973 * 175.04857 * 3 2 1 5 5 C 1.50700 * 109.47026 * 55.04911 * 3 2 1 6 6 H 1.07995 * 120.00305 * 240.00247 * 5 3 2 7 7 C 1.37878 * 119.99961 * 59.99746 * 5 3 2 8 8 N 1.31518 * 120.00059 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00005 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46995 * 269.99703 * 9 7 5 11 11 H 1.48498 * 109.47288 * 29.99991 * 9 7 5 12 12 H 1.48504 * 109.47031 * 149.99651 * 9 7 5 13 13 N 1.46899 * 109.46940 * 295.05129 * 3 2 1 14 14 C 1.46896 * 110.99770 * 279.45320 * 13 3 2 15 15 C 1.50701 * 109.47081 * 175.19648 * 14 13 3 16 16 O 1.21279 * 120.00062 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00116 * 180.02562 * 15 14 13 18 18 C 1.39442 * 119.99776 * 185.32092 * 17 15 14 19 19 C 1.39034 * 119.68246 * 185.31214 * 18 17 15 20 20 C 1.38351 * 119.11243 * 180.02562 * 19 18 17 21 21 C 1.38915 * 118.48663 * 359.97438 * 20 19 18 22 22 Br 1.89091 * 120.35532 * 179.97438 * 21 20 19 23 23 C 1.38158 * 119.29013 * 359.97438 * 21 20 19 24 24 N 1.31940 * 120.83391 * 359.72672 * 23 21 20 25 25 H 1.08998 * 109.47103 * 65.02181 * 1 2 3 26 26 H 1.08998 * 109.47100 * 185.02490 * 1 2 3 27 27 H 1.09005 * 109.46556 * 305.02418 * 1 2 3 28 28 H 1.08996 * 109.46771 * 239.99909 * 2 1 3 29 29 H 1.08996 * 109.46825 * 120.00385 * 2 1 3 30 30 H 0.96998 * 119.99495 * 180.02562 * 8 7 5 31 31 H 1.00893 * 111.00291 * 43.41390 * 13 3 2 32 32 H 1.09000 * 109.47567 * 295.19445 * 14 13 3 33 33 H 1.09000 * 109.47470 * 55.19452 * 14 13 3 34 34 H 0.97001 * 120.00115 * 5.32077 * 17 15 14 35 35 H 1.08000 * 120.44509 * 359.97421 * 19 18 17 36 36 H 1.08003 * 120.76083 * 180.02562 * 20 19 18 37 37 H 1.07992 * 119.58202 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1264 1.4437 0.0887 5 6 1.4402 2.1874 1.1646 6 1 0.8304 3.0615 0.9901 7 6 1.6696 1.7529 2.4528 8 7 1.1465 2.4033 3.4692 9 14 2.7248 0.2413 2.7547 10 1 1.8644 -0.9690 2.7647 11 1 3.7368 0.1203 1.6747 12 1 3.4121 0.3709 4.0647 13 7 1.6504 2.0996 -1.2547 14 6 2.5655 1.7369 -2.3451 15 6 2.0684 2.3325 -3.6371 16 8 1.0517 2.9936 -3.6485 17 7 2.7531 2.1297 -4.7802 18 6 2.3566 2.7705 -5.9534 19 6 2.9971 2.4725 -7.1509 20 6 2.5946 3.1157 -8.3078 21 6 1.5598 4.0389 -8.2268 22 35 0.9680 4.9491 -9.7749 23 6 0.9678 4.2850 -7.0030 24 7 1.3697 3.6514 -5.9177 25 1 -0.3633 0.4339 -0.9315 26 1 -0.3633 -1.0237 0.0900 27 1 -0.3632 0.5898 0.8416 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3083 2.0978 4.3755 31 1 0.6955 1.8809 -1.4961 32 1 3.5615 2.1222 -2.1270 33 1 2.6080 0.6517 -2.4380 34 1 3.5217 1.5379 -4.7866 35 1 3.7987 1.7492 -7.1775 36 1 3.0733 2.9042 -9.2525 37 1 0.1627 5.0016 -6.9347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567748108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:51 Heat of formation + Delta-G solvation = 28.600219 kcal Electronic energy + Delta-G solvation = -20949.383563 eV Core-core repulsion = 17581.017787 eV Total energy + Delta-G solvation = -3368.365776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02782 -39.21233 -36.73591 -35.11443 -33.14002 -32.56341 -31.86155 -31.21613 -29.26306 -27.50416 -25.52439 -24.27877 -23.26130 -22.94164 -20.59839 -19.57383 -18.50725 -17.35862 -16.55376 -16.19635 -15.93051 -15.70372 -15.06428 -14.97843 -14.68755 -14.18326 -13.61703 -13.56841 -13.29477 -13.14584 -12.65632 -12.51890 -12.37133 -12.18832 -11.73450 -11.13902 -10.81721 -10.79146 -10.67096 -10.52262 -10.49844 -10.18953 -10.13977 -9.93078 -9.45219 -9.27386 -9.10211 -8.56370 -8.49225 -7.52131 -6.05201 -4.01864 0.57256 0.86952 1.26368 2.59772 2.68703 3.23730 3.30701 3.35939 3.50368 4.04976 4.38324 4.41436 4.50115 4.52068 4.87767 5.02723 5.20234 5.24135 5.38178 5.49512 5.52838 5.61484 5.82057 5.86734 5.94209 6.12942 6.37247 6.48444 6.68082 6.75241 6.89922 6.95633 7.26132 7.63441 7.70676 7.83281 8.17854 8.27536 8.66438 9.07903 9.56301 11.08162 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.038265 B = 0.002038 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.561197 B =13736.743821 C =14026.252474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.161 4.161 3 C 0.187 3.813 4 H 0.036 0.964 5 C -0.492 4.492 6 H 0.084 0.916 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.297 1.297 13 N -0.656 5.656 14 C 0.041 3.959 15 C 0.500 3.500 16 O -0.448 6.448 17 N -0.666 5.666 18 C 0.385 3.615 19 C -0.209 4.209 20 C -0.018 4.018 21 C -0.188 4.188 22 Br -0.042 7.042 23 C 0.173 3.827 24 N -0.468 5.468 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.345 0.655 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.418 0.582 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -1.085 -28.990 29.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.200 4.200 3 C 0.078 3.922 4 H 0.054 0.946 5 C -0.531 4.531 6 H 0.102 0.898 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.224 1.224 13 N -0.289 5.289 14 C -0.092 4.092 15 C 0.286 3.714 16 O -0.313 6.313 17 N -0.313 5.313 18 C 0.153 3.847 19 C -0.233 4.233 20 C -0.045 4.045 21 C -0.272 4.272 22 Br 0.042 6.958 23 C 0.012 3.988 24 N -0.182 5.182 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.165 0.835 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.255 0.745 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.034 0.484 -28.232 28.523 hybrid contribution 1.369 -2.594 -0.388 2.959 sum 5.403 -2.110 -28.619 29.201 Atomic orbital electron populations 1.21666 0.95656 0.99724 1.02677 1.22537 0.97470 1.01082 0.98949 1.19745 0.96180 0.88195 0.88050 0.94593 1.20848 1.31419 1.12877 0.87917 0.89824 1.24890 0.95549 0.96617 0.96089 1.69881 1.44898 1.40152 0.98776 0.86962 0.81076 0.83868 0.76892 1.20623 1.19547 1.22413 1.60512 1.05383 1.62061 1.00918 1.21894 1.00004 0.98089 0.89206 1.21373 0.84266 0.81236 0.84541 1.90818 1.21764 1.34096 1.84643 1.43974 1.33327 1.46899 1.07149 1.18712 0.90274 0.89612 0.86109 1.21503 1.04952 1.05531 0.91350 1.21285 0.92800 0.91600 0.98826 1.22802 1.04525 1.05434 0.94411 1.96715 1.89197 1.76062 1.33840 1.22812 0.96141 0.94605 0.85212 1.67901 1.12813 1.07787 1.29747 0.94042 0.94991 0.89874 0.94943 0.93090 0.92655 0.83467 0.88196 0.92939 0.74490 0.83754 0.83643 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.38 37.16 0.35 -2.43 16 2 C -0.16 -3.30 5.21 -26.73 -0.14 -3.44 16 3 C 0.19 4.21 1.92 -68.86 -0.13 4.08 16 4 H 0.04 0.82 6.98 -51.93 -0.36 0.46 16 5 C -0.49 -13.49 7.84 -34.44 -0.27 -13.76 16 6 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 7 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 8 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 9 Si 0.88 21.23 24.32 -169.99 -4.13 17.10 16 10 H -0.28 -6.58 6.91 56.52 0.39 -6.19 16 11 H -0.27 -6.13 6.53 56.52 0.37 -5.76 16 12 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 13 N -0.66 -13.31 5.93 -109.22 -0.65 -13.96 16 14 C 0.04 0.62 5.99 -4.98 -0.03 0.59 16 15 C 0.50 7.57 7.81 -10.98 -0.09 7.48 16 16 O -0.45 -8.75 14.39 5.56 0.08 -8.67 16 17 N -0.67 -7.24 5.39 -11.42 -0.06 -7.31 16 18 C 0.39 4.52 7.41 -154.68 -1.15 3.37 16 19 C -0.21 -1.69 9.94 -39.24 -0.39 -2.08 16 20 C -0.02 -0.14 9.93 -39.29 -0.39 -0.53 16 21 C -0.19 -1.77 6.25 -39.36 -0.25 -2.01 16 22 Br -0.04 -0.34 33.73 -68.01 -2.29 -2.64 16 23 C 0.17 1.99 10.93 -17.53 -0.19 1.80 16 24 N -0.47 -6.71 7.92 -12.34 -0.10 -6.81 16 25 H 0.04 0.76 6.67 -51.93 -0.35 0.41 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.90 6.87 -51.93 -0.36 1.54 16 28 H 0.03 0.57 7.00 -51.93 -0.36 0.20 16 29 H 0.05 1.11 3.41 -51.93 -0.18 0.93 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.34 7.12 6.24 -39.30 -0.25 6.87 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.05 0.69 6.97 -51.93 -0.36 0.32 16 34 H 0.42 2.71 8.70 -40.82 -0.36 2.35 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -33.71 323.92 -8.55 -42.27 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.28 Total: 6.53 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.77 Total: -5.05 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.03 Total: -54.42 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.13 Total: 17.10 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.29 Total: -2.64 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.71 -8.55 -42.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567748108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.867 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds