Wall clock time and date at job start Sat Apr 11 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31782 * 119.07283 * 2 1 4 4 C 1.32554 * 121.01787 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.40395 * 180.02562 * 4 3 2 6 6 C 1.38188 * 119.18822 * 0.02562 * 4 3 2 7 7 Br 1.89093 * 120.84087 * 179.97438 * 6 4 3 8 8 C 1.39698 * 118.31564 * 359.97438 * 6 4 3 9 9 N 1.38585 * 120.53440 * 180.02562 * 8 6 4 10 10 C 1.48528 * 111.00108 * 62.60468 * 9 8 6 11 11 C 1.54937 * 103.23011 * 159.71854 * 10 9 8 12 12 C 1.54596 * 102.91909 * 322.59070 * 11 10 9 13 13 O 1.42897 * 110.30741 * 263.03531 * 12 11 10 14 14 C 1.50704 * 110.38817 * 140.91226 * 12 11 10 15 15 H 1.07995 * 120.00036 * 244.22864 * 14 12 11 16 16 C 1.37881 * 119.99919 * 64.23699 * 14 12 11 17 17 N 1.31513 * 119.99957 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99813 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46809 * 90.00072 * 18 16 14 20 20 H 1.48502 * 109.46886 * 209.99592 * 18 16 14 21 21 H 1.48494 * 109.47083 * 329.99996 * 18 16 14 22 22 C 1.47901 * 111.00027 * 180.02562 * 9 8 6 23 23 N 1.31762 * 119.07981 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47075 * 90.00061 * 1 2 3 25 25 H 1.09001 * 109.46830 * 209.99695 * 1 2 3 26 26 H 1.08991 * 109.47285 * 329.99495 * 1 2 3 27 27 H 1.08995 * 109.47527 * 89.99809 * 5 4 3 28 28 H 1.09007 * 109.46850 * 210.00252 * 5 4 3 29 29 H 1.08998 * 109.47349 * 329.99590 * 5 4 3 30 30 H 1.09001 * 110.67012 * 278.15844 * 10 9 8 31 31 H 1.09007 * 110.66541 * 41.28746 * 10 9 8 32 32 H 1.08997 * 110.72705 * 204.22865 * 11 10 9 33 33 H 1.09005 * 110.87240 * 81.01441 * 11 10 9 34 34 H 0.96702 * 113.99905 * 295.72124 * 13 12 11 35 35 H 0.97000 * 119.99674 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.91690 * 333.50797 * 22 9 8 37 37 H 1.09002 * 109.92119 * 94.80306 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1518 0.0000 4 6 3.4722 1.1968 0.0005 5 6 4.1903 2.5216 0.0011 6 6 4.1866 0.0139 0.0005 7 35 6.0775 0.0236 0.0005 8 6 3.4765 -1.1891 0.0005 9 7 4.1466 -2.4022 0.0010 10 6 4.9620 -2.5594 1.2325 11 6 5.1848 -4.0903 1.3172 12 6 3.8351 -4.6637 0.8279 13 8 3.0040 -4.9954 1.9421 14 6 4.0624 -5.8787 -0.0342 15 1 3.7809 -5.8614 -1.0767 16 6 4.6295 -7.0124 0.5081 17 7 4.9725 -7.0333 1.7775 18 14 4.9106 -8.5187 -0.5604 19 1 6.2581 -8.4418 -1.1796 20 1 4.8192 -9.7426 0.2756 21 1 3.8781 -8.5691 -1.6264 22 6 3.1942 -3.5338 0.0003 23 7 2.1474 -1.1515 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 4.3630 2.8409 1.0288 28 1 5.1461 2.4170 -0.5125 29 1 3.5812 3.2653 -0.5129 30 1 5.9135 -2.0370 1.1332 31 1 4.4146 -2.2015 2.1046 32 1 5.3835 -4.3949 2.3448 33 1 5.9970 -4.4015 0.6602 34 1 3.3575 -5.7020 2.4997 35 1 5.3718 -7.8308 2.1589 36 1 2.2530 -3.2273 0.4567 37 1 3.0215 -3.8732 -1.0210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596288347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:10 Heat of formation + Delta-G solvation = 16.116123 kcal Electronic energy + Delta-G solvation = -22246.470589 eV Core-core repulsion = 18877.563462 eV Total energy + Delta-G solvation = -3368.907127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24083 -38.62646 -35.44075 -34.67437 -32.68495 -32.11847 -30.91833 -29.37636 -29.04897 -28.31745 -27.10119 -24.76280 -22.67068 -22.02251 -20.66555 -19.63016 -17.69303 -17.14190 -16.71698 -15.57814 -15.03030 -14.92310 -14.51957 -14.47728 -13.94179 -13.59402 -13.42317 -13.14014 -12.85219 -12.46087 -12.38872 -12.29449 -12.12918 -11.70550 -11.41309 -11.30861 -11.08141 -10.87371 -10.81451 -10.67061 -10.48092 -10.36367 -10.04032 -9.90796 -9.28891 -9.09587 -8.97390 -8.62970 -8.20388 -8.11630 -6.24727 -4.31034 0.78128 1.13167 1.62417 3.22220 3.29475 3.33788 3.54134 3.78712 3.91472 4.16260 4.30519 4.82367 4.90478 5.02955 5.13295 5.36651 5.40561 5.46652 5.52430 5.64222 5.67347 5.78379 5.87700 5.94609 6.05129 6.21099 6.30959 6.60017 6.70140 6.80049 6.92741 7.16825 7.32497 7.43803 7.48023 7.77679 8.08030 8.19551 8.70648 9.36165 9.48021 10.83142 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016580 B = 0.004456 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.379153 B = 6282.522739 C = 7437.759900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.354 3.646 3 N -0.544 5.544 4 C 0.220 3.780 5 C -0.112 4.112 6 C -0.233 4.233 7 Br -0.015 7.015 8 C 0.395 3.605 9 N -0.448 5.448 10 C 0.033 3.967 11 C -0.119 4.119 12 C 0.245 3.755 13 O -0.591 6.591 14 C -0.529 4.529 15 H 0.063 0.937 16 C 0.070 3.930 17 N -0.900 5.900 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.053 3.947 23 N -0.546 5.546 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.385 0.615 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 16.955 -1.416 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 N -0.264 5.264 4 C 0.073 3.927 5 C -0.169 4.169 6 C -0.321 4.321 7 Br 0.069 6.931 8 C 0.152 3.848 9 N -0.164 5.164 10 C -0.091 4.091 11 C -0.157 4.157 12 C 0.204 3.796 13 O -0.401 6.401 14 C -0.568 4.568 15 H 0.082 0.918 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.073 4.073 23 N -0.268 5.268 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.236 0.764 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.198 17.201 -1.988 17.316 hybrid contribution 0.704 -1.386 0.129 1.560 sum 0.506 15.814 -1.859 15.931 Atomic orbital electron populations 1.20593 0.85440 1.04303 1.03984 1.23237 0.98118 0.82899 0.87189 1.68230 1.08095 1.30058 1.19986 1.21415 0.89345 0.94501 0.87397 1.20908 1.00158 0.91740 1.04102 1.22929 0.93090 0.96206 1.19850 1.96575 1.00381 1.98569 1.97572 1.20322 0.87768 0.91339 0.85358 1.61546 1.20083 0.99601 1.35200 1.23710 0.97138 1.01435 0.86847 1.23092 1.01457 0.89022 1.02174 1.19330 0.84951 0.91118 0.84167 1.86102 1.51759 1.60019 1.42241 1.21663 1.40711 0.97683 0.96701 0.91848 1.25001 0.94127 0.98831 0.95237 1.69607 1.42683 1.29652 1.12035 0.86436 0.78671 0.81722 0.80268 1.20501 1.21089 1.19746 1.23003 0.94338 0.88079 1.01854 1.68475 1.07833 1.30279 1.20231 0.89405 0.89263 0.89589 0.89217 0.89520 0.89578 0.89033 0.93524 0.90710 0.90710 0.76362 0.92230 0.90222 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.32 36.01 0.37 -0.59 16 2 C 0.35 5.55 7.64 -157.23 -1.20 4.35 16 3 N -0.54 -8.22 10.27 -7.05 -0.07 -8.29 16 4 C 0.22 3.16 6.82 -82.30 -0.56 2.59 16 5 C -0.11 -1.13 9.79 36.00 0.35 -0.78 16 6 C -0.23 -3.76 6.10 -39.05 -0.24 -4.00 16 7 Br -0.02 -0.21 28.56 -68.01 -1.94 -2.15 16 8 C 0.39 7.42 6.21 -154.73 -0.96 6.46 16 9 N -0.45 -9.10 5.00 -169.02 -0.85 -9.94 16 10 C 0.03 0.65 5.65 -1.90 -0.01 0.64 16 11 C -0.12 -2.68 5.50 -24.87 -0.14 -2.82 16 12 C 0.24 6.03 0.99 -90.40 -0.09 5.94 16 13 O -0.59 -15.32 12.93 -35.23 -0.46 -15.77 16 14 C -0.53 -14.06 8.10 -34.44 -0.28 -14.33 16 15 H 0.06 1.69 7.34 -52.49 -0.39 1.31 16 16 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 17 N -0.90 -23.54 10.88 55.43 0.60 -22.93 16 18 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.05 1.19 5.84 -2.74 -0.02 1.18 16 23 N -0.55 -10.07 8.20 -9.94 -0.08 -10.15 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.81 6.76 -51.92 -0.35 0.46 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.62 5.52 -51.93 -0.29 1.33 16 31 H 0.05 0.93 8.00 -51.93 -0.42 0.51 16 32 H 0.07 1.73 8.05 -51.93 -0.42 1.32 16 33 H 0.07 1.77 7.86 -51.93 -0.41 1.36 16 34 H 0.38 10.06 7.05 45.56 0.32 10.38 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.08 1.84 6.35 -51.93 -0.33 1.51 16 37 H 0.08 1.96 7.39 -51.93 -0.38 1.57 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -28.34 318.26 -9.79 -38.13 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -3.91 Total: 10.44 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.86 Total: 0.37 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.40 Total: -51.32 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.46 Total: -15.77 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -1.94 Total: -2.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.34 -9.79 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596288347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.244 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds