Wall clock time and date at job start Sat Apr 11 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31775 * 119.07557 * 2 1 4 4 C 1.32552 * 121.01945 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.40655 * 179.97438 * 4 3 2 6 6 C 1.38192 * 119.18684 * 0.02562 * 4 3 2 7 7 Br 1.89098 * 120.84028 * 180.02562 * 6 4 3 8 8 C 1.39692 * 118.31533 * 0.02562 * 6 4 3 9 9 N 1.38587 * 120.53424 * 179.97438 * 8 6 4 10 10 C 1.48557 * 111.00020 * 300.12802 * 9 8 6 11 11 C 1.54382 * 104.59234 * 200.96112 * 10 9 8 12 12 C 1.54259 * 105.06143 * 23.84846 * 11 10 9 13 13 O 1.42903 * 110.32142 * 118.99941 * 12 11 10 14 14 C 1.50700 * 110.31936 * 241.10327 * 12 11 10 15 15 H 1.08001 * 119.99636 * 120.50235 * 14 12 11 16 16 C 1.37878 * 120.00195 * 300.22374 * 14 12 11 17 17 N 1.31513 * 119.99800 * 354.53129 * 16 14 12 18 18 Si 1.86804 * 119.99945 * 174.53492 * 16 14 12 19 19 H 1.48493 * 109.47477 * 94.98052 * 18 16 14 20 20 H 1.48499 * 109.46671 * 214.98582 * 18 16 14 21 21 H 1.48496 * 109.46963 * 334.98185 * 18 16 14 22 22 C 1.48826 * 110.97184 * 184.70136 * 9 8 6 23 23 N 1.31763 * 119.07575 * 180.25859 * 2 1 3 24 24 H 1.08995 * 109.47807 * 89.99840 * 1 2 3 25 25 H 1.09007 * 109.46776 * 209.99889 * 1 2 3 26 26 H 1.08999 * 109.46876 * 329.99468 * 1 2 3 27 27 H 1.09000 * 109.47564 * 270.02107 * 5 4 3 28 28 H 1.09001 * 109.47376 * 30.02602 * 5 4 3 29 29 H 1.09006 * 109.47051 * 150.01825 * 5 4 3 30 30 H 1.08994 * 110.41452 * 82.17676 * 10 9 8 31 31 H 1.09005 * 110.40509 * 319.73542 * 10 9 8 32 32 H 1.08999 * 110.32118 * 264.94974 * 11 10 9 33 33 H 1.09008 * 110.32333 * 142.74787 * 11 10 9 34 34 H 0.96700 * 113.99959 * 56.89481 * 13 12 11 35 35 H 0.97002 * 119.99925 * 180.02562 * 17 16 14 36 36 H 1.08998 * 110.44677 * 40.33148 * 22 9 8 37 37 H 1.08995 * 110.49672 * 277.80090 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1517 0.0000 4 6 3.4721 1.1967 -0.0005 5 6 4.1903 2.5215 -0.0011 6 6 4.1866 0.0137 -0.0016 7 35 6.0775 0.0233 -0.0016 8 6 3.4764 -1.1892 -0.0026 9 7 4.1464 -2.4024 -0.0043 10 6 5.0127 -2.5305 -1.2043 11 6 5.2450 -4.0492 -1.3560 12 6 4.0484 -4.7110 -0.6419 13 8 3.2964 -5.5027 -1.5637 14 6 4.5289 -5.5608 0.5061 15 1 4.1958 -5.3486 1.5113 16 6 5.3892 -6.6126 0.2725 17 7 5.7057 -6.9417 -0.9608 18 14 6.1051 -7.5702 1.7078 19 1 5.2717 -8.7717 1.9662 20 1 7.4913 -7.9902 1.3803 21 1 6.1215 -6.7097 2.9179 22 6 3.1915 -3.5381 -0.1191 23 7 2.1473 -1.1516 -0.0052 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 4.3628 2.8409 -1.0289 28 1 3.5815 3.2651 0.5132 29 1 5.1463 2.4168 0.5122 30 1 5.9599 -2.0149 -1.0463 31 1 4.5051 -2.1338 -2.0836 32 1 6.1797 -4.3390 -0.8761 33 1 5.2577 -4.3268 -2.4101 34 1 3.8153 -6.1860 -2.0099 35 1 6.3107 -7.6819 -1.1252 36 1 2.3998 -3.2996 -0.8292 37 1 2.7687 -3.7812 0.8557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596288348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:12 Heat of formation + Delta-G solvation = 16.898817 kcal Electronic energy + Delta-G solvation = -22266.003823 eV Core-core repulsion = 18897.130636 eV Total energy + Delta-G solvation = -3368.873187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.24315 -38.63264 -35.46091 -34.68640 -32.70553 -32.14582 -30.94570 -29.36677 -29.05500 -28.25994 -27.06311 -24.78769 -22.72523 -22.03293 -20.68194 -19.65756 -17.65731 -17.09010 -16.69486 -15.63182 -15.05980 -14.84846 -14.62637 -14.48274 -13.87912 -13.57384 -13.39154 -13.15405 -12.87719 -12.56536 -12.40130 -12.33142 -12.17428 -11.82813 -11.38465 -11.26432 -11.12276 -10.87511 -10.81636 -10.67629 -10.44924 -10.34457 -10.04512 -9.88393 -9.22942 -9.10030 -8.96581 -8.57752 -8.22360 -8.15321 -6.21399 -4.25839 0.77046 1.12204 1.61880 3.24177 3.31807 3.37335 3.52803 3.76162 3.90372 4.14411 4.33642 4.80103 4.89273 5.06263 5.13211 5.35940 5.40274 5.44209 5.50332 5.59484 5.65847 5.73064 5.85350 5.91025 6.02694 6.18773 6.26901 6.52654 6.63826 6.72966 6.91533 7.11469 7.28508 7.43158 7.47657 7.80024 8.15771 8.17948 8.76192 9.36924 9.48898 10.86915 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.004756 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.182288 B = 5886.192901 C = 7004.516058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.354 3.646 3 N -0.545 5.545 4 C 0.220 3.780 5 C -0.112 4.112 6 C -0.235 4.235 7 Br -0.013 7.013 8 C 0.393 3.607 9 N -0.435 5.435 10 C 0.031 3.969 11 C -0.122 4.122 12 C 0.248 3.752 13 O -0.590 6.590 14 C -0.521 4.521 15 H 0.062 0.938 16 C 0.069 3.931 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.066 3.934 23 N -0.548 5.548 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.383 0.617 35 H 0.266 0.734 36 H 0.062 0.938 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 17.011 -0.633 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 N -0.264 5.264 4 C 0.074 3.926 5 C -0.169 4.169 6 C -0.323 4.323 7 Br 0.071 6.929 8 C 0.150 3.850 9 N -0.151 5.151 10 C -0.093 4.093 11 C -0.161 4.161 12 C 0.208 3.792 13 O -0.399 6.399 14 C -0.559 4.559 15 H 0.081 0.919 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.059 4.059 23 N -0.270 5.270 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.771 17.155 -0.054 17.247 hybrid contribution 1.082 -0.976 0.092 1.460 sum -0.688 16.180 0.038 16.194 Atomic orbital electron populations 1.20587 0.85441 1.04255 1.03990 1.23224 0.98098 0.82909 0.87230 1.68225 1.08096 1.30051 1.20063 1.21407 0.89331 0.94485 0.87331 1.20912 1.00186 0.91739 1.04093 1.22938 0.93130 0.96254 1.19980 1.96575 1.00334 1.98456 1.97560 1.20385 0.87885 0.91197 0.85529 1.61980 1.17343 0.99371 1.36364 1.23633 0.97113 1.01304 0.87293 1.22971 1.03004 0.89618 1.00468 1.19306 0.85335 0.87234 0.87366 1.86110 1.42316 1.51258 1.60236 1.21610 1.27181 1.13376 0.93783 0.91945 1.24972 0.95643 0.96638 0.95991 1.69667 1.36159 1.29064 1.18927 0.86469 0.78321 0.79988 0.82627 1.20638 1.21080 1.19687 1.23045 0.92943 0.87903 1.02055 1.68499 1.07685 1.30391 1.20391 0.89447 0.89310 0.89559 0.89220 0.89564 0.89501 0.88638 0.93940 0.89965 0.92081 0.76610 0.92376 0.91946 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.32 36.00 0.37 -0.56 16 2 C 0.35 5.46 7.64 -157.24 -1.20 4.26 16 3 N -0.55 -8.15 10.27 -7.05 -0.07 -8.22 16 4 C 0.22 3.16 6.82 -82.30 -0.56 2.59 16 5 C -0.11 -1.13 9.79 36.01 0.35 -0.78 16 6 C -0.24 -3.80 6.09 -39.06 -0.24 -4.04 16 7 Br -0.01 -0.19 28.33 -68.01 -1.93 -2.12 16 8 C 0.39 7.36 6.23 -154.73 -0.96 6.39 16 9 N -0.44 -8.90 5.16 -168.36 -0.87 -9.77 16 10 C 0.03 0.61 5.48 -2.18 -0.01 0.60 16 11 C -0.12 -2.74 5.56 -25.35 -0.14 -2.88 16 12 C 0.25 6.10 1.05 -90.39 -0.09 6.00 16 13 O -0.59 -15.16 12.93 -35.23 -0.46 -15.62 16 14 C -0.52 -13.94 8.12 -34.44 -0.28 -14.22 16 15 H 0.06 1.70 7.53 -52.49 -0.40 1.31 16 16 C 0.07 1.82 4.96 -17.82 -0.09 1.73 16 17 N -0.90 -23.59 10.92 55.43 0.61 -22.99 16 18 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 22 C 0.07 1.49 5.17 -2.03 -0.01 1.48 16 23 N -0.55 -9.94 8.54 -9.94 -0.08 -10.02 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.82 6.76 -51.93 -0.35 0.47 16 30 H 0.10 1.71 5.30 -51.93 -0.28 1.43 16 31 H 0.04 0.80 7.97 -51.93 -0.41 0.39 16 32 H 0.08 1.99 7.24 -51.93 -0.38 1.62 16 33 H 0.06 1.36 7.98 -51.92 -0.41 0.94 16 34 H 0.38 9.85 7.34 45.56 0.33 10.18 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.06 1.41 7.22 -51.93 -0.37 1.03 16 37 H 0.08 1.98 7.66 -51.93 -0.40 1.58 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -28.59 318.28 -9.81 -38.39 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -3.91 Total: 9.23 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.87 Total: 0.58 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.42 Total: -51.00 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.46 Total: -15.62 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -1.93 Total: -2.12 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.59 -9.81 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596288348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.293 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds