Wall clock time and date at job start Sat Apr 11 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.39864 * 119.72286 * 2 1 4 4 C 1.30347 * 121.02887 * 180.02562 * 3 2 1 5 5 C 1.41136 * 120.40823 * 0.02562 * 4 3 2 6 6 N 1.38448 * 120.30170 * 179.97438 * 5 4 3 7 7 C 1.46849 * 110.99828 * 63.95516 * 6 5 4 8 8 C 1.53035 * 109.52197 * 174.16164 * 7 6 5 9 9 C 1.53121 * 109.28046 * 59.17940 * 8 7 6 10 10 C 1.53123 * 109.16129 * 302.34534 * 9 8 7 11 11 H 1.08993 * 109.50239 * 297.67374 * 10 9 8 12 12 C 1.50701 * 109.50173 * 177.59231 * 10 9 8 13 13 H 1.08002 * 119.99761 * 239.99653 * 12 10 9 14 14 C 1.37871 * 119.99694 * 60.28216 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 C 1.46847 * 110.99867 * 299.74812 * 6 5 4 21 21 C 1.38291 * 119.39749 * 0.25575 * 5 4 3 22 22 Br 1.89098 * 120.48978 * 179.72625 * 21 5 4 23 23 C 1.34762 * 119.71741 * 180.02562 * 2 1 3 24 24 O 1.22149 * 120.20879 * 359.97438 * 23 2 1 25 25 H 1.09011 * 109.46913 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47805 * 119.99843 * 1 2 3 27 27 H 1.09001 * 109.47335 * 240.00642 * 1 2 3 28 28 H 1.08011 * 119.79637 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.46074 * 54.14638 * 7 6 5 30 30 H 1.09004 * 109.46119 * 294.17519 * 7 6 5 31 31 H 1.08999 * 109.50518 * 299.23822 * 8 7 6 32 32 H 1.08997 * 109.53707 * 179.14216 * 8 7 6 33 33 H 1.08994 * 109.52385 * 182.44373 * 9 8 7 34 34 H 1.08998 * 109.52294 * 62.25024 * 9 8 7 35 35 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46466 * 65.82494 * 20 6 5 37 37 H 1.08998 * 109.46337 * 305.85392 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1584 1.2146 0.0000 4 6 3.4615 1.2443 -0.0005 5 6 4.2035 0.0437 -0.0016 6 7 5.5875 0.0778 -0.0027 7 6 6.0997 0.6921 1.2290 8 6 7.6258 0.5817 1.2591 9 6 8.2083 1.2900 0.0329 10 6 7.6219 0.6633 -1.2352 11 1 7.9116 -0.3860 -1.2900 12 6 8.1448 1.3936 -2.4453 13 1 7.4574 1.8831 -3.1194 14 6 9.5002 1.4318 -2.6950 15 7 10.3372 0.8358 -1.8742 16 14 10.1477 2.3304 -4.1992 17 1 9.0103 2.9120 -4.9562 18 1 11.0645 3.4170 -3.7702 19 1 10.8832 1.3762 -5.0674 20 6 6.0959 0.7714 -1.1930 21 6 3.5354 -1.1671 -0.0075 22 35 4.4986 -2.7943 -0.0169 23 6 2.1330 -1.1704 -0.0005 24 8 1.5209 -2.2274 -0.0005 25 1 -0.3633 1.0278 -0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 -0.3634 -0.5137 0.8900 28 1 3.9768 2.1936 -0.0009 29 1 5.6811 0.1764 2.0932 30 1 5.8109 1.7427 1.2581 31 1 7.9150 -0.4691 1.2439 32 1 8.0073 1.0510 2.1659 33 1 9.2923 1.1766 0.0275 34 1 7.9520 2.3488 0.0680 35 1 11.2907 0.8624 -2.0501 36 1 5.8072 1.8217 -1.1525 37 1 5.6745 0.3133 -2.0879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596329591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:13 Heat of formation + Delta-G solvation = 43.782085 kcal Electronic energy + Delta-G solvation = -22066.837854 eV Core-core repulsion = 18699.130413 eV Total energy + Delta-G solvation = -3367.707441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.22416 -39.11826 -37.12527 -35.04673 -33.16085 -32.22300 -31.44285 -30.09560 -29.37683 -27.36709 -25.10783 -24.19020 -24.05211 -21.92139 -21.49266 -19.25945 -18.04540 -17.59776 -17.09303 -16.32483 -16.05481 -15.40076 -14.72597 -14.37606 -14.11277 -13.62452 -13.52109 -13.40500 -12.98624 -12.95041 -12.70229 -12.56492 -12.41140 -11.92254 -11.60038 -11.19554 -11.03918 -10.88319 -10.75536 -10.27898 -10.15846 -10.02148 -9.89654 -9.68301 -9.50287 -9.27563 -8.86380 -8.57626 -8.42880 -8.20062 -6.06286 -4.13115 0.07628 1.53076 1.54039 2.05689 3.09948 3.25331 3.34309 3.36795 3.72211 3.98553 4.38446 4.55613 4.80498 5.01008 5.09868 5.24332 5.27936 5.37504 5.40277 5.52210 5.67438 5.75624 5.83590 5.98403 6.10365 6.27674 6.49968 6.54934 6.74083 6.95361 7.18513 7.26833 7.34903 7.49259 7.66912 7.67995 7.94541 8.04812 8.33803 8.90339 9.52182 10.99695 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.004104 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.316112 B = 6821.337784 C = 7377.629101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.415 5.415 3 N -0.207 5.207 4 C 0.056 3.944 5 C 0.174 3.826 6 N -0.504 5.504 7 C 0.068 3.932 8 C -0.116 4.116 9 C -0.113 4.113 10 C 0.058 3.942 11 H 0.040 0.960 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.071 3.929 21 C -0.154 4.154 22 Br 0.025 6.975 23 C 0.515 3.485 24 O -0.523 6.523 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.198 0.802 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.033 0.967 35 H 0.260 0.740 36 H 0.033 0.967 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 -0.691 7.000 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.235 5.235 3 N -0.021 5.021 4 C -0.146 4.146 5 C 0.069 3.931 6 N -0.227 5.227 7 C -0.057 4.057 8 C -0.154 4.154 9 C -0.151 4.151 10 C 0.039 3.961 11 H 0.058 0.942 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.053 4.053 21 C -0.246 4.246 22 Br 0.111 6.889 23 C 0.309 3.691 24 O -0.400 6.400 25 H 0.113 0.887 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.214 0.786 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.778 -1.919 7.003 16.465 hybrid contribution 0.599 1.209 -0.826 1.582 sum -14.179 -0.710 6.177 15.482 Atomic orbital electron populations 1.21836 0.74271 1.04259 1.03635 1.49589 1.08467 1.01976 1.63500 1.75121 1.10036 1.06665 1.10241 1.24775 0.89860 1.00846 0.99121 1.20012 0.92666 0.90864 0.89565 1.59501 1.00747 1.56951 1.05484 1.22157 0.97976 0.96163 0.89443 1.21684 0.91848 1.02146 0.99699 1.21702 1.03830 0.96739 0.92799 1.18678 0.85855 0.97939 0.93614 0.94191 1.21100 0.91963 1.34067 1.08457 0.92682 1.24900 0.96982 0.95336 0.96386 1.69882 1.02704 1.43363 1.36449 0.86571 0.78951 0.79547 0.83118 1.19845 1.21052 1.21011 1.22547 1.00467 0.94238 0.88094 1.23754 0.93653 0.94825 1.12373 1.96734 1.72221 1.23214 1.96726 1.16823 0.87958 0.84350 0.79970 1.91025 1.69254 1.28493 1.51237 0.88722 0.90241 0.90278 0.78553 0.91723 0.94495 0.91508 0.92750 0.88714 0.94797 0.92979 0.94887 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 10.35 59.84 0.62 1.56 16 2 N -0.41 -5.49 3.91 -70.39 -0.27 -5.77 16 3 N -0.21 -2.59 11.50 30.81 0.35 -2.24 16 4 C 0.06 0.70 9.99 -17.08 -0.17 0.53 16 5 C 0.17 2.58 4.65 -83.76 -0.39 2.19 16 6 N -0.50 -8.19 3.89 -171.01 -0.67 -8.85 16 7 C 0.07 1.00 5.16 -3.83 -0.02 0.98 16 8 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 9 C -0.11 -2.36 5.03 -26.61 -0.13 -2.49 16 10 C 0.06 1.31 2.26 -91.69 -0.21 1.10 16 11 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 12 C -0.52 -13.12 8.56 -34.44 -0.29 -13.41 16 13 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 14 C 0.07 1.71 5.31 -17.82 -0.09 1.62 16 15 N -0.89 -23.90 11.36 55.43 0.63 -23.27 16 16 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.07 1.31 4.34 -3.83 -0.02 1.29 16 21 C -0.15 -2.46 6.30 -38.81 -0.24 -2.70 16 22 Br 0.03 0.41 32.66 -68.01 -2.22 -1.81 16 23 C 0.52 8.18 7.47 -15.51 -0.12 8.07 16 24 O -0.52 -9.32 16.51 4.78 0.08 -9.24 16 25 H 0.09 0.66 8.09 -51.92 -0.42 0.24 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.20 2.00 7.17 -52.48 -0.38 1.62 16 29 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.04 0.49 7.55 -51.93 -0.39 0.10 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 2.29 6.16 -51.93 -0.32 1.97 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.03 0.57 7.35 -51.93 -0.38 0.19 16 37 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -28.71 323.61 -8.28 -36.99 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.81 Total: -2.57 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.23 Total: -3.39 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.04 Total: -40.13 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -2.22 Total: -1.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.71 -8.28 -36.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.772 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds