Wall clock time and date at job start Sat Apr 11 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28441 * 125.19157 * 2 1 4 4 C 1.30843 * 110.97044 * 179.97438 * 3 2 1 5 5 C 1.39773 * 107.87064 * 359.97438 * 4 3 2 6 6 Br 1.89098 * 127.33124 * 179.97438 * 5 4 3 7 7 C 1.36714 * 125.18624 * 179.97438 * 2 1 3 8 8 C 1.47060 * 126.89615 * 0.02562 * 7 2 1 9 9 O 1.21640 * 120.00304 * 268.47095 * 8 7 2 10 10 N 1.34778 * 119.99945 * 88.48126 * 8 7 2 11 11 C 1.46921 * 120.63107 * 5.10597 * 10 8 7 12 12 C 1.53623 * 108.54298 * 126.37186 * 11 10 8 13 13 C 1.53041 * 109.24109 * 54.85590 * 12 11 10 14 14 C 1.53044 * 109.53840 * 298.51151 * 13 12 11 15 15 H 1.08998 * 109.49866 * 301.40992 * 14 13 12 16 16 C 1.50705 * 109.49582 * 181.31551 * 14 13 12 17 17 H 1.08000 * 119.99997 * 0.16447 * 16 14 13 18 18 C 1.37879 * 119.99692 * 180.16287 * 16 14 13 19 19 N 1.31507 * 120.00172 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99794 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47071 * 59.99829 * 20 18 16 22 22 H 1.48492 * 109.46864 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46892 * 299.99692 * 20 18 16 24 24 C 1.46927 * 120.62914 * 185.39279 * 10 8 7 25 25 H 1.09002 * 109.46544 * 85.13095 * 1 2 3 26 26 H 1.08995 * 109.47266 * 205.13296 * 1 2 3 27 27 H 1.08999 * 109.46603 * 325.13414 * 1 2 3 28 28 H 1.07998 * 126.06419 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.58670 * 246.20774 * 11 10 8 30 30 H 1.09000 * 109.58473 * 6.63058 * 11 10 8 31 31 H 1.09002 * 109.63835 * 294.86828 * 12 11 10 32 32 H 1.08997 * 109.45958 * 174.73854 * 12 11 10 33 33 H 1.09002 * 109.45983 * 178.48971 * 13 12 11 34 34 H 1.09002 * 109.44884 * 58.52885 * 13 12 11 35 35 H 0.96998 * 120.00049 * 179.97438 * 19 18 16 36 36 H 1.08999 * 109.58519 * 353.36775 * 24 10 8 37 37 H 1.08997 * 109.58837 * 113.79432 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4736 0.7282 0.0005 5 6 3.5625 -0.6667 0.0015 6 35 5.1361 -1.7154 0.0020 7 6 2.2528 -1.1173 0.0005 8 6 1.8004 -2.5166 0.0006 9 8 1.6396 -3.1038 1.0537 10 7 1.5641 -3.1485 -1.1662 11 6 1.8597 -2.4915 -2.4466 12 6 2.7636 -3.4180 -3.2739 13 6 2.0928 -4.7868 -3.4104 14 6 1.9085 -5.4070 -2.0234 15 1 2.8786 -5.5028 -1.5359 16 6 1.2774 -6.7686 -2.1612 17 1 1.0345 -7.1546 -3.1402 18 6 1.0101 -7.5214 -1.0374 19 7 1.3054 -7.0510 0.1547 20 14 0.2285 -9.2094 -1.2082 21 1 1.1100 -10.0828 -2.0238 22 1 0.0456 -9.8086 0.1381 23 1 -1.0922 -9.0782 -1.8745 24 6 1.0001 -4.5051 -1.1819 25 1 -0.3632 0.0872 -1.0240 26 1 -0.3633 -0.9303 0.4364 27 1 -0.3632 0.8432 0.5875 28 1 4.3043 1.4183 0.0003 29 1 0.9304 -2.3064 -2.9854 30 1 2.3722 -1.5472 -2.2629 31 1 3.7257 -3.5326 -2.7746 32 1 2.9162 -2.9874 -4.2635 33 1 2.7188 -5.4388 -4.0195 34 1 1.1199 -4.6682 -3.8874 35 1 1.1170 -7.5805 0.9453 36 1 0.9453 -4.8899 -0.1636 37 1 0.0022 -4.4810 -1.6197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:16 Heat of formation + Delta-G solvation = 45.973760 kcal Electronic energy + Delta-G solvation = -22506.395645 eV Core-core repulsion = 19138.783242 eV Total energy + Delta-G solvation = -3367.612403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.62795 -39.31718 -36.77450 -33.75251 -33.49685 -32.03389 -31.58661 -30.05113 -29.45354 -27.08398 -25.27866 -24.99923 -22.22869 -21.87087 -21.54039 -19.76097 -18.64086 -17.49589 -16.54941 -16.26820 -15.68007 -15.33121 -14.67373 -14.50503 -14.08522 -13.77588 -13.74480 -13.18372 -13.10333 -12.85809 -12.70506 -12.65712 -12.22730 -11.90330 -11.22049 -11.13836 -11.02299 -10.94441 -10.57504 -10.46883 -10.28315 -10.00578 -9.96025 -9.73899 -9.28140 -9.15404 -9.02341 -8.66750 -8.48016 -7.92174 -6.03062 -4.12337 1.50079 1.59180 2.32984 2.41144 2.96928 3.29435 3.36068 3.36929 3.50053 4.39075 4.40465 4.54725 4.91369 4.94793 5.21017 5.24305 5.26795 5.28187 5.33283 5.46058 5.61664 5.90991 6.10796 6.14443 6.26444 6.49129 6.56950 6.60071 6.78740 6.91767 7.01482 7.10682 7.55431 7.80707 7.85051 7.90348 8.05628 8.31747 8.54248 8.91549 9.53554 11.02071 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.004479 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.469046 B = 6250.001237 C = 6752.968593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.270 5.270 3 N -0.284 5.284 4 C 0.037 3.963 5 C -0.182 4.182 6 Br 0.002 6.998 7 C 0.034 3.966 8 C 0.573 3.427 9 O -0.508 6.508 10 N -0.586 5.586 11 C 0.109 3.891 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.041 3.959 15 H 0.032 0.968 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.880 5.880 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.192 0.808 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.125 0.875 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 16.080 -2.943 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.057 5.057 3 N -0.114 5.114 4 C -0.142 4.142 5 C -0.273 4.273 6 Br 0.086 6.914 7 C -0.099 4.099 8 C 0.355 3.645 9 O -0.382 6.382 10 N -0.318 5.318 11 C -0.015 4.015 12 C -0.170 4.170 13 C -0.148 4.148 14 C 0.022 3.978 15 H 0.050 0.950 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.007 4.007 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.209 0.791 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.487 16.225 -2.169 16.558 hybrid contribution -0.182 -1.236 -0.101 1.254 sum 2.305 14.989 -2.269 15.334 Atomic orbital electron populations 1.22268 0.72428 1.05844 1.04841 1.45623 1.07673 1.01659 1.50730 1.73184 1.03454 1.13370 1.21385 1.23466 0.93797 0.92628 1.04358 1.22340 0.91606 0.95043 1.18279 1.96695 1.27951 1.68806 1.97989 1.21847 0.90624 0.90395 1.07076 1.16971 0.79183 0.83173 0.85154 1.90900 1.50791 1.65799 1.30722 1.48508 1.60969 1.18387 1.03947 1.21752 0.99084 0.95587 0.85052 1.21996 0.99229 0.97203 0.98545 1.21637 0.99002 0.93783 1.00397 1.18963 0.96186 0.93003 0.89682 0.94966 1.21028 1.41711 1.00431 0.92865 0.92349 1.25050 0.95436 0.98058 0.95407 1.69863 1.46611 1.37583 0.97639 0.86657 0.79799 0.84363 0.77188 1.20246 1.21252 1.20272 1.22458 0.95322 0.76149 1.06808 0.89224 0.88353 0.88118 0.79076 0.91881 0.91498 0.91626 0.92113 0.92796 0.93193 0.92516 0.85697 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.22 59.85 0.67 1.54 16 2 N -0.27 -3.77 3.75 -63.86 -0.24 -4.01 16 3 N -0.28 -3.89 11.90 30.60 0.36 -3.52 16 4 C 0.04 0.48 12.03 -17.40 -0.21 0.28 16 5 C -0.18 -2.81 6.54 -38.91 -0.25 -3.06 16 6 Br 0.00 0.03 33.98 -68.01 -2.31 -2.28 16 7 C 0.03 0.56 4.77 -82.01 -0.39 0.17 16 8 C 0.57 11.43 6.75 -12.68 -0.09 11.34 16 9 O -0.51 -12.30 16.52 5.24 0.09 -12.22 16 10 N -0.59 -11.33 2.97 -173.91 -0.52 -11.84 16 11 C 0.11 1.71 6.34 -3.49 -0.02 1.68 16 12 C -0.13 -2.11 6.10 -26.39 -0.16 -2.28 16 13 C -0.11 -2.12 5.10 -26.69 -0.14 -2.26 16 14 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 15 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.52 -13.69 8.56 -34.44 -0.29 -13.98 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.88 -25.04 11.39 55.43 0.63 -24.41 16 20 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.11 2.57 5.41 -3.71 -0.02 2.55 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 1.07 7.66 -51.93 -0.40 0.67 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.99 6.22 -51.93 -0.32 0.66 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.13 3.38 5.11 -51.93 -0.27 3.11 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -31.14 328.13 -8.02 -39.16 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.75 Total: 0.04 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.20 Total: -1.63 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.24 Total: -43.79 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.31 Total: -2.28 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.14 -8.02 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.139 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds