Wall clock time and date at job start Sat Apr 11 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28441 * 125.19157 * 2 1 4 4 C 1.30843 * 110.97044 * 179.97438 * 3 2 1 5 5 C 1.39773 * 107.87064 * 359.97438 * 4 3 2 6 6 Br 1.89098 * 127.33124 * 179.97438 * 5 4 3 7 7 C 1.36714 * 125.18624 * 179.97438 * 2 1 3 8 8 C 1.47060 * 126.89615 * 0.02562 * 7 2 1 9 9 O 1.21640 * 120.00304 * 268.47095 * 8 7 2 10 10 N 1.34778 * 119.99945 * 88.48126 * 8 7 2 11 11 C 1.46921 * 120.63107 * 5.10597 * 10 8 7 12 12 C 1.53623 * 108.54298 * 126.37186 * 11 10 8 13 13 C 1.53041 * 109.24109 * 54.85590 * 12 11 10 14 14 C 1.53044 * 109.53840 * 298.51151 * 13 12 11 15 15 H 1.08998 * 109.49866 * 301.40992 * 14 13 12 16 16 C 1.50705 * 109.49582 * 181.31551 * 14 13 12 17 17 H 1.08000 * 119.99997 * 0.16447 * 16 14 13 18 18 C 1.37879 * 119.99692 * 180.16287 * 16 14 13 19 19 N 1.31507 * 120.00172 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99794 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47071 * 59.99829 * 20 18 16 22 22 H 1.48492 * 109.46864 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46892 * 299.99692 * 20 18 16 24 24 C 1.46927 * 120.62914 * 185.39279 * 10 8 7 25 25 H 1.09002 * 109.46544 * 85.13095 * 1 2 3 26 26 H 1.08995 * 109.47266 * 205.13296 * 1 2 3 27 27 H 1.08999 * 109.46603 * 325.13414 * 1 2 3 28 28 H 1.07998 * 126.06419 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.58670 * 246.20774 * 11 10 8 30 30 H 1.09000 * 109.58473 * 6.63058 * 11 10 8 31 31 H 1.09002 * 109.63835 * 294.86828 * 12 11 10 32 32 H 1.08997 * 109.45958 * 174.73854 * 12 11 10 33 33 H 1.09002 * 109.45983 * 178.48971 * 13 12 11 34 34 H 1.09002 * 109.44884 * 58.52885 * 13 12 11 35 35 H 0.96998 * 120.00049 * 179.97438 * 19 18 16 36 36 H 1.08999 * 109.58519 * 353.36775 * 24 10 8 37 37 H 1.08997 * 109.58837 * 113.79432 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4736 0.7282 0.0005 5 6 3.5625 -0.6667 0.0015 6 35 5.1361 -1.7154 0.0020 7 6 2.2528 -1.1173 0.0005 8 6 1.8004 -2.5166 0.0006 9 8 1.6396 -3.1038 1.0537 10 7 1.5641 -3.1485 -1.1662 11 6 1.8597 -2.4915 -2.4466 12 6 2.7636 -3.4180 -3.2739 13 6 2.0928 -4.7868 -3.4104 14 6 1.9085 -5.4070 -2.0234 15 1 2.8786 -5.5028 -1.5359 16 6 1.2774 -6.7686 -2.1612 17 1 1.0345 -7.1546 -3.1402 18 6 1.0101 -7.5214 -1.0374 19 7 1.3054 -7.0510 0.1547 20 14 0.2285 -9.2094 -1.2082 21 1 1.1100 -10.0828 -2.0238 22 1 0.0456 -9.8086 0.1381 23 1 -1.0922 -9.0782 -1.8745 24 6 1.0001 -4.5051 -1.1819 25 1 -0.3632 0.0872 -1.0240 26 1 -0.3633 -0.9303 0.4364 27 1 -0.3632 0.8432 0.5875 28 1 4.3043 1.4183 0.0003 29 1 0.9304 -2.3064 -2.9854 30 1 2.3722 -1.5472 -2.2629 31 1 3.7257 -3.5326 -2.7746 32 1 2.9162 -2.9874 -4.2635 33 1 2.7188 -5.4388 -4.0195 34 1 1.1199 -4.6682 -3.8874 35 1 1.1170 -7.5805 0.9453 36 1 0.9453 -4.8899 -0.1636 37 1 0.0022 -4.4810 -1.6197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597900770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:16 Heat of formation + Delta-G solvation = 26.514633 kcal Electronic energy + Delta-G solvation = -22507.239456 eV Core-core repulsion = 19138.783242 eV Total energy + Delta-G solvation = -3368.456214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.74677 -40.89174 -38.42302 -35.35420 -34.76790 -33.64982 -32.84621 -31.63901 -30.79932 -28.02506 -27.15683 -26.53882 -23.70880 -23.41139 -22.61922 -21.25130 -20.04915 -18.96484 -18.16557 -17.81593 -16.92752 -16.78581 -16.42306 -16.06504 -15.36991 -15.23317 -14.89701 -14.62681 -14.57551 -14.26492 -13.99796 -13.88332 -13.58869 -13.50190 -12.84883 -12.76735 -12.39572 -12.31627 -12.26978 -12.20448 -11.89073 -11.65957 -11.38376 -11.17761 -10.98144 -10.88032 -10.51353 -10.34509 -9.83729 -9.57279 -8.09006 -6.25980 0.28651 0.44504 1.05987 1.35787 1.43587 1.43824 1.52517 1.60869 2.09735 2.43866 3.17088 3.22259 3.42471 3.93424 3.95341 4.10295 4.20049 4.22137 4.30364 4.33925 4.48762 4.52356 4.69424 4.75001 4.80393 5.06515 5.07035 5.21108 5.25331 5.32134 5.46504 5.50642 5.60867 5.90074 5.98220 6.32209 6.40017 6.77015 6.85467 6.98320 7.44326 8.94114 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.004479 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.469046 B = 6250.001237 C = 6752.968593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.262 5.262 3 N -0.278 5.278 4 C 0.046 3.954 5 C -0.188 4.188 6 Br -0.004 7.004 7 C 0.010 3.990 8 C 0.577 3.423 9 O -0.565 6.565 10 N -0.585 5.585 11 C 0.108 3.892 12 C -0.125 4.125 13 C -0.104 4.104 14 C 0.039 3.961 15 H -0.013 1.013 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 0.955 3.045 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.265 1.265 24 C 0.126 3.874 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.126 0.874 28 H 0.227 0.773 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.260 0.740 36 H 0.081 0.919 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 18.106 -5.023 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.050 5.050 3 N -0.108 5.108 4 C -0.132 4.132 5 C -0.279 4.279 6 Br 0.079 6.921 7 C -0.124 4.124 8 C 0.362 3.638 9 O -0.443 6.443 10 N -0.315 5.315 11 C -0.014 4.014 12 C -0.163 4.163 13 C -0.141 4.141 14 C 0.020 3.980 15 H 0.005 0.995 16 C -0.572 4.572 17 H 0.082 0.918 18 C -0.187 4.187 19 N -0.553 5.553 20 Si 0.780 3.220 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.190 1.190 24 C 0.005 3.995 25 H 0.134 0.866 26 H 0.102 0.898 27 H 0.144 0.856 28 H 0.244 0.756 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.055 18.283 -4.305 18.895 hybrid contribution -0.036 -1.821 0.537 1.899 sum 2.019 16.462 -3.768 17.008 Atomic orbital electron populations 1.22612 0.70482 1.06241 1.06960 1.45949 1.08754 1.00692 1.49567 1.73227 1.03747 1.12807 1.21040 1.24001 0.94466 0.91880 1.02895 1.22529 0.90939 0.96141 1.18329 1.96694 1.28060 1.69336 1.97981 1.21312 0.91697 0.89284 1.10083 1.17304 0.77889 0.84370 0.84270 1.90864 1.53183 1.67549 1.32668 1.48459 1.60315 1.17194 1.05570 1.22024 1.00553 0.95660 0.83191 1.21957 0.98040 0.95558 1.00714 1.21516 1.00134 0.95362 0.97107 1.18895 0.93696 0.93097 0.92344 0.99523 1.21457 1.41121 1.01707 0.92942 0.91824 1.25849 0.96068 1.01695 0.95075 1.70066 1.48122 1.38816 0.98266 0.85657 0.79357 0.80025 0.76912 1.19583 1.21690 1.19026 1.21895 0.95516 0.78098 1.04008 0.86596 0.89795 0.85570 0.75629 0.89118 0.89872 0.93174 0.87885 0.92809 0.91864 0.93127 0.90081 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 11.22 127.77 1.43 2.80 16 2 N -0.26 -6.78 3.75 -355.95 -1.34 -8.11 16 3 N -0.28 -6.75 11.90 -57.09 -0.68 -7.43 16 4 C 0.05 1.07 12.03 85.21 1.03 2.09 16 5 C -0.19 -5.52 6.54 22.71 0.15 -5.38 16 6 Br 0.00 -0.13 33.98 -20.37 -0.69 -0.82 16 7 C 0.01 0.31 4.77 40.76 0.19 0.51 16 8 C 0.58 23.48 6.75 86.56 0.58 24.07 16 9 O -0.56 -28.86 16.52 -4.16 -0.07 -28.93 16 10 N -0.58 -22.68 2.97 -822.38 -2.44 -25.12 16 11 C 0.11 3.12 6.34 86.51 0.55 3.67 16 12 C -0.12 -3.72 6.10 30.82 0.19 -3.53 16 13 C -0.10 -3.84 5.10 30.62 0.16 -3.69 16 14 C 0.04 1.90 2.25 -11.46 -0.03 1.87 16 15 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 16 C -0.53 -28.46 8.56 25.60 0.22 -28.24 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 18 C 0.01 0.70 5.30 84.66 0.45 1.15 16 19 N -0.91 -54.51 11.39 21.45 0.24 -54.27 16 20 Si 0.95 43.27 29.54 68.60 2.03 45.29 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 C 0.13 5.98 5.41 86.36 0.47 6.44 16 25 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 1.78 7.66 -2.39 -0.02 1.77 16 27 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.23 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.20 6.22 -2.39 -0.01 2.19 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.08 4.65 5.11 -2.39 -0.01 4.63 16 37 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -71.40 328.13 3.53 -67.87 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.08 Total: 9.74 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.39 Total: 1.77 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -4.21 Total: -94.93 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.07 Total: -28.93 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.69 Total: -0.82 kcal Total: -71.40 3.53 -67.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.383 kcal (2) G-P(sol) polarization free energy of solvation -71.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds