Wall clock time and date at job start Sat Apr 11 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28438 * 125.18414 * 2 1 4 4 C 1.30844 * 110.96482 * 180.02562 * 3 2 1 5 5 C 1.39776 * 107.87133 * 359.74022 * 4 3 2 6 6 Br 1.89100 * 127.33322 * 180.27138 * 5 4 3 7 7 C 1.36700 * 125.19006 * 180.02562 * 2 1 3 8 8 C 1.47069 * 126.89673 * 359.95912 * 7 2 1 9 9 O 1.21642 * 119.99711 * 98.90666 * 8 7 2 10 10 N 1.34775 * 120.00264 * 278.63227 * 8 7 2 11 11 C 1.46928 * 120.62772 * 354.82495 * 10 8 7 12 12 C 1.53199 * 108.77226 * 233.58592 * 11 10 8 13 13 C 1.53034 * 109.31539 * 305.36823 * 12 11 10 14 14 C 1.53043 * 109.53935 * 61.36341 * 13 12 11 15 15 H 1.08999 * 109.49366 * 58.58745 * 14 13 12 16 16 C 1.50697 * 109.49561 * 178.65040 * 14 13 12 17 17 H 1.07996 * 120.00474 * 0.02562 * 16 14 13 18 18 C 1.37887 * 119.99656 * 180.02562 * 16 14 13 19 19 N 1.31515 * 120.00080 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 119.99935 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47044 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47220 * 120.00057 * 20 18 16 23 23 H 1.48498 * 109.47359 * 240.00234 * 20 18 16 24 24 C 1.46921 * 120.62853 * 174.54787 * 10 8 7 25 25 H 1.08997 * 109.47310 * 274.78583 * 1 2 3 26 26 H 1.09004 * 109.46940 * 34.77990 * 1 2 3 27 27 H 1.08994 * 109.47520 * 154.77656 * 1 2 3 28 28 H 1.07997 * 126.06176 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.58903 * 353.37237 * 11 10 8 30 30 H 1.08999 * 109.58134 * 113.66144 * 11 10 8 31 31 H 1.09000 * 109.49518 * 65.32196 * 12 11 10 32 32 H 1.09003 * 109.49106 * 185.41362 * 12 11 10 33 33 H 1.08997 * 109.46265 * 181.38500 * 13 12 11 34 34 H 1.09009 * 109.46001 * 301.34770 * 13 12 11 35 35 H 0.96993 * 119.99939 * 180.02562 * 19 18 16 36 36 H 1.08998 * 109.58929 * 246.19671 * 24 10 8 37 37 H 1.09002 * 109.59214 * 6.62672 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4734 0.7283 -0.0005 5 6 3.5625 -0.6666 0.0051 6 35 5.1360 -1.7152 0.0142 7 6 2.2528 -1.1172 -0.0005 8 6 1.8004 -2.5166 -0.0003 9 8 1.7680 -3.1454 -1.0411 10 7 1.4271 -3.1040 1.1538 11 6 1.5729 -2.3983 2.4343 12 6 2.3673 -3.2852 3.3983 13 6 1.6860 -4.6512 3.5075 14 6 1.6686 -5.3256 2.1338 15 1 2.6900 -5.4350 1.7693 16 6 1.0273 -6.6845 2.2488 17 1 0.6675 -7.0326 3.2057 18 6 0.8999 -7.4834 1.1322 19 7 1.3385 -7.0597 -0.0330 20 14 0.1043 -9.1674 1.2745 21 1 -0.3019 -9.4055 2.6829 22 1 -1.0931 -9.2250 0.3980 23 1 1.0749 -10.2104 0.8558 24 6 0.8611 -4.4598 1.1548 25 1 -0.3634 0.0857 1.0240 26 1 -0.3633 0.8441 -0.5862 27 1 -0.3634 -0.9296 -0.4379 28 1 4.3041 1.4185 -0.0003 29 1 2.1064 -1.4610 2.2763 30 1 0.5875 -2.1921 2.8520 31 1 3.3821 -3.4138 3.0219 32 1 2.4002 -2.8154 4.3814 33 1 2.2355 -5.2758 4.2117 34 1 0.6631 -4.5196 3.8604 35 1 1.2485 -7.6215 -0.8185 36 1 -0.1811 -4.4205 1.4716 37 1 0.9247 -4.8831 0.1524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:18 Heat of formation + Delta-G solvation = 46.046838 kcal Electronic energy + Delta-G solvation = -22504.083686 eV Core-core repulsion = 19136.474452 eV Total energy + Delta-G solvation = -3367.609234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.63258 -39.32032 -36.78216 -33.77167 -33.47852 -32.03963 -31.58852 -30.05887 -29.46061 -27.08911 -25.28640 -25.00728 -22.22926 -21.87972 -21.54041 -19.77272 -18.64780 -17.52267 -16.54901 -16.27693 -15.64907 -15.34792 -14.67853 -14.50210 -14.09619 -13.79312 -13.74316 -13.17980 -13.10678 -12.87834 -12.70933 -12.67742 -12.23712 -11.91955 -11.21924 -11.12307 -11.05018 -10.97041 -10.55753 -10.45735 -10.29609 -9.99947 -9.96888 -9.73607 -9.28330 -9.16340 -9.01562 -8.66724 -8.49226 -7.92872 -6.03742 -4.12751 1.49119 1.59716 2.33743 2.41973 2.96367 3.27328 3.36261 3.38891 3.49805 4.38641 4.39957 4.53960 4.90385 4.94548 5.19849 5.21779 5.26344 5.27342 5.32769 5.44898 5.59859 5.89100 6.10214 6.13094 6.24989 6.47899 6.56113 6.58841 6.77551 6.90465 7.00891 7.09480 7.54565 7.79840 7.84789 7.89707 8.04671 8.31277 8.54032 8.91618 9.53252 11.01557 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.004454 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.053956 B = 6285.119149 C = 6801.226554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.271 5.271 3 N -0.284 5.284 4 C 0.037 3.963 5 C -0.180 4.180 6 Br 0.002 6.998 7 C 0.033 3.967 8 C 0.573 3.427 9 O -0.506 6.506 10 N -0.588 5.588 11 C 0.110 3.890 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.033 0.967 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.112 3.888 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.192 0.808 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.264 0.736 36 H 0.047 0.953 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 16.207 2.614 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.058 5.058 3 N -0.114 5.114 4 C -0.143 4.143 5 C -0.270 4.270 6 Br 0.086 6.914 7 C -0.100 4.100 8 C 0.355 3.645 9 O -0.379 6.379 10 N -0.320 5.320 11 C -0.014 4.014 12 C -0.170 4.170 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.051 0.949 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.007 4.007 25 H 0.108 0.892 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.209 0.791 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.203 16.319 1.859 16.572 hybrid contribution -0.188 -1.230 0.063 1.246 sum 2.015 15.089 1.922 15.344 Atomic orbital electron populations 1.22261 0.72460 1.05778 1.04866 1.45632 1.07653 1.01703 1.50813 1.73180 1.03452 1.13390 1.21344 1.23467 0.93799 0.92623 1.04387 1.22333 0.91621 0.95025 1.18069 1.96694 1.27913 1.68855 1.97976 1.21861 0.90655 0.90315 1.07174 1.16982 0.79101 0.83362 0.85056 1.90902 1.52268 1.63265 1.31472 1.48519 1.60404 1.18492 1.04601 1.21652 0.99943 0.94978 0.84819 1.21922 0.99954 0.97470 0.97663 1.21634 0.98941 0.93744 1.00475 1.19049 0.96808 0.92966 0.89053 0.94920 1.21102 1.40151 0.99911 0.94766 0.92248 1.25058 0.95278 0.98189 0.95476 1.69892 1.45471 1.37048 0.99234 0.86547 0.79127 0.84319 0.78088 1.19785 1.20996 1.20973 1.22535 0.95080 0.76325 1.06770 0.89203 0.88121 0.88431 0.79075 0.91637 0.91900 0.91696 0.92073 0.92778 0.93176 0.92635 0.93422 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 11.21 59.85 0.67 1.53 16 2 N -0.27 -3.76 3.75 -63.86 -0.24 -4.00 16 3 N -0.28 -3.87 11.90 30.61 0.36 -3.50 16 4 C 0.04 0.48 12.03 -17.40 -0.21 0.27 16 5 C -0.18 -2.79 6.75 -38.91 -0.26 -3.05 16 6 Br 0.00 0.03 33.98 -68.01 -2.31 -2.28 16 7 C 0.03 0.55 4.67 -82.02 -0.38 0.16 16 8 C 0.57 11.41 6.75 -12.68 -0.09 11.33 16 9 O -0.51 -12.25 16.53 5.24 0.09 -12.17 16 10 N -0.59 -11.30 2.97 -173.90 -0.52 -11.82 16 11 C 0.11 1.70 6.31 -3.71 -0.02 1.68 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C -0.11 -2.11 5.10 -26.69 -0.14 -2.24 16 14 C 0.04 0.96 2.26 -91.42 -0.21 0.75 16 15 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 16 C -0.52 -13.64 8.56 -34.44 -0.29 -13.94 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 19 N -0.88 -25.02 11.41 55.43 0.63 -24.39 16 20 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.11 2.57 5.44 -3.49 -0.02 2.55 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.04 7.66 -51.93 -0.40 0.64 16 28 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.07 0.96 6.38 -51.93 -0.33 0.62 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.12 3.36 5.14 -51.93 -0.27 3.09 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -31.23 328.44 -8.02 -39.25 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.77 Total: -0.17 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.21 Total: -1.63 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.24 Total: -43.71 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.31 Total: -2.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.23 -8.02 -39.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.298 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds