Wall clock time and date at job start Sat Apr 11 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38237 * 120.37523 * 2 1 4 4 N 1.31890 * 120.92826 * 179.97438 * 3 2 1 5 5 C 1.31874 * 121.78196 * 0.02562 * 4 3 2 6 6 Br 1.89098 * 119.67845 * 179.97438 * 5 4 3 7 7 C 1.38964 * 120.64531 * 359.97438 * 5 4 3 8 8 N 1.39988 * 120.49286 * 179.97438 * 7 5 4 9 9 C 1.34771 * 120.00043 * 204.33175 * 8 7 5 10 10 O 1.21294 * 120.00362 * 5.58237 * 9 8 7 11 11 C 1.50700 * 119.99792 * 185.57939 * 9 8 7 12 12 H 1.08993 * 109.47306 * 40.00711 * 11 9 8 13 13 N 1.46906 * 109.46889 * 160.00166 * 11 9 8 14 14 C 1.53004 * 109.47356 * 279.99921 * 11 9 8 15 15 C 1.52994 * 109.47266 * 175.00370 * 14 11 9 16 16 C 1.50694 * 109.47403 * 179.97438 * 15 14 11 17 17 H 1.07999 * 119.99942 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00473 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00294 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46683 * 60.00540 * 20 18 16 22 22 H 1.48502 * 109.47305 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47235 * 300.00764 * 20 18 16 24 24 C 1.38552 * 120.37256 * 179.71878 * 2 1 3 25 25 H 1.09002 * 109.46867 * 90.00083 * 1 2 3 26 26 H 1.09000 * 109.47791 * 209.99795 * 1 2 3 27 27 H 1.09002 * 109.47266 * 330.00222 * 1 2 3 28 28 H 1.07994 * 119.53297 * 359.97438 * 3 2 1 29 29 H 0.97001 * 119.99720 * 24.33239 * 8 7 5 30 30 H 1.00903 * 110.99805 * 60.00065 * 13 11 9 31 31 H 1.00899 * 110.99809 * 183.95586 * 13 11 9 32 32 H 1.09006 * 109.46853 * 295.00490 * 14 11 9 33 33 H 1.09000 * 109.46886 * 54.99833 * 14 11 9 34 34 H 1.08998 * 109.47094 * 300.00132 * 15 14 11 35 35 H 1.09000 * 109.47607 * 59.99904 * 15 14 11 36 36 H 0.96997 * 120.00371 * 179.97438 * 19 18 16 37 37 H 1.08008 * 120.81117 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2059 1.1926 0.0000 4 7 3.5248 1.2053 0.0005 5 6 4.2301 0.0911 0.0005 6 35 6.1191 0.1787 0.0005 7 6 3.5988 -1.1469 0.0005 8 7 4.3507 -2.3277 0.0000 9 6 3.8154 -3.4672 -0.4809 10 8 2.7219 -3.4495 -1.0053 11 6 4.5756 -4.7634 -0.3670 12 1 5.0662 -4.8128 0.6050 13 7 3.6438 -5.8910 -0.5029 14 6 5.6289 -4.8360 -1.4744 15 6 6.4825 -6.0915 -1.2849 16 6 7.5195 -6.1633 -2.3759 17 1 7.5655 -5.3905 -3.1289 18 6 8.4103 -7.2150 -2.4123 19 7 8.3547 -8.1559 -1.4951 20 14 9.6953 -7.3043 -3.7652 21 1 10.5634 -6.1010 -3.7035 22 1 10.5239 -8.5229 -3.5812 23 1 9.0199 -7.3603 -5.0865 24 6 2.2075 -1.1954 0.0059 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3635 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6645 2.1270 -0.0004 29 1 5.2570 -2.3257 0.3458 30 1 3.1759 -5.8678 -1.3966 31 1 4.1185 -6.7708 -0.3660 32 1 5.1338 -4.8762 -2.4447 33 1 6.2661 -3.9529 -1.4281 34 1 6.9775 -6.0512 -0.3147 35 1 5.8452 -6.9746 -1.3313 36 1 8.9811 -8.8960 -1.5208 37 1 1.6869 -2.1417 0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691609172.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:33 Heat of formation + Delta-G solvation = -12.167566 kcal Electronic energy + Delta-G solvation = -21048.640321 eV Core-core repulsion = 17678.506721 eV Total energy + Delta-G solvation = -3370.133600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16374 -39.55672 -35.92575 -35.32647 -34.08380 -32.93804 -31.47727 -30.40854 -29.99500 -27.13737 -26.72643 -24.65555 -23.55802 -22.04184 -20.88716 -20.06174 -18.12987 -17.36588 -16.90713 -16.59713 -16.12853 -15.34251 -14.78404 -14.60180 -14.45547 -14.40320 -13.80287 -13.53940 -13.36811 -13.28669 -13.02808 -12.92465 -12.24837 -12.17343 -11.88617 -11.29196 -11.14538 -11.04102 -10.97373 -10.77289 -10.65545 -10.26005 -10.07844 -9.83473 -9.53043 -9.33998 -9.28006 -8.49331 -8.46579 -8.34278 -6.13133 -4.16587 0.56189 0.94448 1.16486 2.53004 2.73454 3.26122 3.31091 3.33556 3.40082 4.24245 4.33839 4.36441 4.56330 4.74628 4.74877 4.85843 5.00063 5.23087 5.29453 5.35809 5.38813 5.55898 5.58498 5.62511 5.92004 6.00237 6.15366 6.38017 6.42398 6.76110 7.05978 7.36213 7.43801 7.44684 7.54070 7.74268 7.83379 7.97633 8.25097 8.88912 9.48755 10.97684 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003364 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.760311 B = 8320.350721 C = 9855.956751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C 0.077 3.923 4 N -0.435 5.435 5 C 0.074 3.926 6 Br -0.003 7.003 7 C 0.153 3.847 8 N -0.667 5.667 9 C 0.529 3.471 10 O -0.511 6.511 11 C 0.077 3.923 12 H 0.104 0.896 13 N -0.829 5.829 14 C -0.140 4.140 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.089 4.089 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.164 0.836 29 H 0.418 0.582 30 H 0.347 0.653 31 H 0.359 0.641 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.263 0.737 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 17.603 6.310 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.084 4.084 4 N -0.144 5.144 5 C -0.146 4.146 6 Br 0.081 6.919 7 C 0.051 3.949 8 N -0.313 5.313 9 C 0.318 3.682 10 O -0.385 6.385 11 C -0.038 4.038 12 H 0.122 0.878 13 N -0.362 5.362 14 C -0.180 4.180 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.118 4.118 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.181 0.819 29 H 0.257 0.743 30 H 0.160 0.840 31 H 0.175 0.825 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.730 18.463 6.628 22.856 hybrid contribution 1.169 -1.088 -1.397 2.122 sum -10.561 17.375 5.231 20.995 Atomic orbital electron populations 1.20762 0.89391 1.03472 1.03164 1.21000 0.98119 0.93223 0.97894 1.22601 0.88626 0.97977 0.99182 1.67354 1.08492 1.28339 1.10183 1.22510 0.93258 0.89604 1.09185 1.96815 0.98862 1.98707 1.97528 1.18452 0.91982 0.85949 0.98480 1.43870 1.18411 1.06980 1.62067 1.21307 0.86270 0.84980 0.75646 1.90604 1.20779 1.85899 1.41180 1.21500 0.92252 0.87870 1.02193 0.87841 1.58757 1.32069 1.05040 1.40359 1.22444 0.96586 1.02701 0.96279 1.19094 0.93914 0.90554 0.97602 1.21122 1.15369 1.08229 1.11719 0.92706 1.24999 0.97600 0.95593 0.96011 1.69929 1.37409 1.11726 1.34079 0.86641 0.81489 0.77482 0.82330 1.20159 1.21184 1.20196 1.21840 0.91322 1.00469 0.98165 0.90272 0.90804 0.90789 0.81910 0.74301 0.83986 0.82523 0.92361 0.92295 0.96182 0.96303 0.92763 0.81583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.04 36.00 0.36 -0.39 16 2 C -0.10 -1.00 5.89 -104.51 -0.62 -1.62 16 3 C 0.08 0.79 10.85 -17.53 -0.19 0.60 16 4 N -0.44 -5.58 10.32 -11.49 -0.12 -5.70 16 5 C 0.07 0.98 7.19 -17.26 -0.12 0.85 16 6 Br 0.00 -0.04 32.48 -68.01 -2.21 -2.24 16 7 C 0.15 2.06 6.45 -83.50 -0.54 1.52 16 8 N -0.67 -8.92 5.17 -9.74 -0.05 -8.97 16 9 C 0.53 8.07 6.90 -10.99 -0.08 8.00 16 10 O -0.51 -8.72 13.45 5.54 0.07 -8.65 16 11 C 0.08 1.20 3.21 -68.86 -0.22 0.98 16 12 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 13 N -0.83 -12.94 8.94 -5.65 -0.05 -12.99 16 14 C -0.14 -2.60 4.78 -26.73 -0.13 -2.73 16 15 C 0.03 0.59 4.74 -27.89 -0.13 0.46 16 16 C -0.53 -14.11 9.11 -34.44 -0.31 -14.42 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 20 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.09 -1.12 8.51 -39.10 -0.33 -1.46 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 28 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.42 5.01 7.53 -40.82 -0.31 4.70 16 30 H 0.35 5.45 8.58 -39.29 -0.34 5.12 16 31 H 0.36 5.66 7.55 -39.29 -0.30 5.36 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 37 H 0.17 2.23 5.89 -52.48 -0.31 1.92 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -30.42 335.05 -8.52 -38.94 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.53 Total: 10.00 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.41 Total: -6.65 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.52 Total: -52.45 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.21 Total: -2.24 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.42 -8.52 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691609172.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.773 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds