Wall clock time and date at job start Sat Apr 11 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34240 * 125.74256 * 2 1 4 4 C 1.38062 * 107.43732 * 180.13785 * 3 2 1 5 5 C 1.47394 * 126.42654 * 179.89610 * 4 3 2 6 6 O 1.21604 * 120.00321 * 179.71144 * 5 4 3 7 7 N 1.34780 * 119.99585 * 359.71295 * 5 4 3 8 8 C 1.46498 * 119.99923 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.54083 * 327.61222 * 8 7 5 10 10 C 1.54268 * 110.48389 * 90.22208 * 8 7 5 11 11 C 1.53876 * 106.59607 * 142.28972 * 10 8 7 12 12 C 1.54268 * 106.59992 * 0.02562 * 11 10 8 13 13 H 1.08996 * 110.48777 * 95.06810 * 12 11 10 14 14 C 1.50698 * 110.48760 * 217.71212 * 12 11 10 15 15 H 1.08006 * 120.00324 * 114.76926 * 14 12 11 16 16 C 1.37879 * 120.00291 * 294.77471 * 14 12 11 17 17 N 1.31513 * 119.99457 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00343 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47170 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47199 * 119.99839 * 18 16 14 21 21 H 1.48503 * 109.46820 * 239.99985 * 18 16 14 22 22 C 1.54882 * 110.48722 * 205.00109 * 8 7 5 23 23 C 1.41372 * 107.15565 * 359.63481 * 4 3 2 24 24 Br 1.89094 * 126.00190 * 180.20569 * 23 4 3 25 25 N 1.30516 * 107.99933 * 0.22360 * 23 4 3 26 26 H 1.09000 * 109.47236 * 270.29698 * 1 2 3 27 27 H 1.09001 * 109.47411 * 30.29560 * 1 2 3 28 28 H 1.08998 * 109.47355 * 150.30093 * 1 2 3 29 29 H 1.08002 * 126.28545 * 359.97438 * 3 2 1 30 30 H 0.97002 * 119.99982 * 0.02562 * 7 5 4 31 31 H 1.08994 * 110.03288 * 23.00936 * 10 8 7 32 32 H 1.08998 * 110.03249 * 261.56937 * 10 8 7 33 33 H 1.08998 * 110.03805 * 240.71854 * 11 10 8 34 34 H 1.09002 * 110.03703 * 119.28069 * 11 10 8 35 35 H 0.97000 * 119.99685 * 180.02562 * 17 16 14 36 36 H 1.08994 * 110.76048 * 85.06650 * 22 8 7 37 37 H 1.09004 * 110.75771 * 321.69045 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0896 0.0000 4 6 3.5599 0.6559 -0.0032 5 6 4.7633 1.5070 -0.0065 6 8 5.8678 0.9983 -0.0038 7 7 4.6394 2.8491 -0.0124 8 6 5.8355 3.6950 -0.0152 9 1 6.6450 3.2146 0.5344 10 6 6.2741 4.0050 -1.4613 11 6 6.7711 5.4614 -1.4672 12 6 6.6176 5.9853 -0.0243 13 1 7.5535 5.8746 0.5233 14 6 6.1758 7.4260 -0.0305 15 1 5.2068 7.6955 0.3632 16 6 7.0085 8.4003 -0.5389 17 7 8.1886 8.0723 -1.0179 18 14 6.4612 10.1863 -0.5459 19 1 5.1026 10.2900 0.0447 20 1 7.4126 10.9988 0.2541 21 1 6.4330 10.6898 -1.9427 22 6 5.5182 5.0843 0.5917 23 6 3.5315 -0.7575 0.0035 24 35 5.0387 -1.8994 0.0083 25 7 2.2824 -1.1358 0.0054 26 1 -0.3634 0.0053 1.0276 27 1 -0.3634 0.8873 -0.5184 28 1 -0.3634 -0.8926 -0.5091 29 1 1.9159 2.1169 -0.0004 30 1 3.7583 3.2548 -0.0142 31 1 5.4279 3.8966 -2.1395 32 1 7.0802 3.3343 -1.7589 33 1 6.1660 6.0597 -2.1483 34 1 7.8182 5.4974 -1.7676 35 1 8.7746 8.7577 -1.3752 36 1 5.6030 5.0598 1.6781 37 1 4.5271 5.4213 0.2880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891288832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:46 Heat of formation + Delta-G solvation = 34.818658 kcal Electronic energy + Delta-G solvation = -21108.834399 eV Core-core repulsion = 17740.738275 eV Total energy + Delta-G solvation = -3368.096124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.70695 -39.16757 -36.93263 -34.02325 -33.67397 -32.14096 -31.11568 -30.57720 -28.12882 -27.44775 -26.62200 -23.94603 -22.78574 -21.19439 -20.22733 -19.85676 -18.93253 -17.87130 -16.47000 -16.21060 -16.14731 -15.28628 -14.87814 -14.69679 -14.37559 -14.12037 -13.81335 -13.55043 -13.25284 -12.94134 -12.50064 -12.38184 -11.80811 -11.50092 -11.26643 -11.19360 -10.98399 -10.86085 -10.55975 -10.50774 -10.24420 -9.95428 -9.59929 -9.56395 -9.45680 -9.19879 -9.01872 -8.72801 -8.49021 -8.38246 -6.00717 -4.03830 0.96646 1.16911 1.68362 2.25341 3.28964 3.37408 3.39709 3.50914 3.53540 4.04145 4.27479 4.43742 4.63904 4.81753 4.92384 4.98088 5.18365 5.31419 5.56554 5.67521 5.70866 5.88119 6.32049 6.35284 6.39198 6.58109 6.68874 6.75729 6.92956 6.95240 6.98259 7.29440 7.33754 7.72138 7.85116 7.89404 8.02462 8.44200 8.55057 8.99293 9.60214 11.09075 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.002703 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.404160 B =10355.376710 C =11448.780083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.352 5.352 3 C 0.104 3.896 4 C -0.257 4.257 5 C 0.582 3.418 6 O -0.526 6.526 7 N -0.716 5.716 8 C 0.138 3.862 9 H 0.089 0.911 10 C -0.134 4.134 11 C -0.097 4.097 12 C 0.051 3.949 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.887 5.887 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.120 4.120 23 C 0.120 3.880 24 Br 0.059 6.941 25 N -0.270 5.270 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.193 0.807 30 H 0.392 0.608 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.259 0.741 36 H 0.053 0.947 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.766 -18.527 1.633 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.133 5.133 3 C -0.047 4.047 4 C -0.273 4.273 5 C 0.368 3.632 6 O -0.402 6.402 7 N -0.365 5.365 8 C 0.035 3.965 9 H 0.107 0.893 10 C -0.173 4.173 11 C -0.136 4.136 12 C 0.032 3.968 13 H 0.052 0.948 14 C -0.552 4.552 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.525 5.525 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.158 4.158 23 C -0.126 4.126 24 Br 0.141 6.859 25 N -0.094 5.094 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.209 0.791 30 H 0.225 0.775 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.209 -20.224 1.556 25.352 hybrid contribution -0.662 2.195 -0.152 2.298 sum -15.871 -18.029 1.404 24.060 Atomic orbital electron populations 1.22098 0.72821 1.05387 1.04277 1.48369 1.07277 1.03467 1.54157 1.23190 0.89914 0.94053 0.97553 1.20336 0.93705 0.92545 1.20759 1.17129 0.87326 0.81973 0.76799 1.90824 1.26131 1.73516 1.49721 1.46035 1.10225 1.05230 1.75050 1.22089 0.86395 0.90545 0.97492 0.89330 1.22623 0.99844 0.99468 0.95324 1.22091 1.00222 0.90710 1.00528 1.19411 0.93013 0.92977 0.91412 0.94815 1.21154 1.02205 0.91501 1.40363 0.92626 1.24991 0.94920 0.98726 0.95359 1.69981 1.08590 1.33130 1.40842 0.86603 0.78668 0.85490 0.77601 1.19861 1.21092 1.21128 1.22867 1.01259 0.92758 0.98895 1.24002 0.92945 0.93358 1.02329 1.96835 1.30474 1.61299 1.97338 1.77334 1.00078 1.07631 1.24334 0.89822 0.88525 0.88603 0.79061 0.77475 0.93113 0.92914 0.93004 0.92620 0.93108 0.92847 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 11.44 59.84 0.68 1.05 16 2 N -0.35 -3.16 3.98 -67.60 -0.27 -3.43 16 3 C 0.10 0.94 10.99 -16.56 -0.18 0.76 16 4 C -0.26 -3.38 6.13 -105.04 -0.64 -4.03 16 5 C 0.58 9.14 7.81 -12.53 -0.10 9.04 16 6 O -0.53 -10.02 15.07 5.27 0.08 -9.94 16 7 N -0.72 -10.32 5.08 -53.28 -0.27 -10.59 16 8 C 0.14 2.45 3.22 -66.28 -0.21 2.24 16 9 H 0.09 1.71 7.56 -51.93 -0.39 1.32 16 10 C -0.13 -2.55 6.54 -25.61 -0.17 -2.72 16 11 C -0.10 -2.21 5.60 -25.61 -0.14 -2.35 16 12 C 0.05 1.21 2.73 -90.10 -0.25 0.97 16 13 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.51 -13.58 8.36 -34.44 -0.29 -13.86 16 15 H 0.06 1.44 7.77 -52.48 -0.41 1.03 16 16 C 0.06 1.68 5.35 -17.82 -0.10 1.59 16 17 N -0.89 -25.21 12.63 55.43 0.70 -24.51 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.12 -2.28 5.89 -24.73 -0.15 -2.42 16 23 C 0.12 1.66 7.75 -16.92 -0.13 1.53 16 24 Br 0.06 0.80 32.51 -68.01 -2.21 -1.41 16 25 N -0.27 -3.38 12.50 32.15 0.40 -2.97 16 26 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.19 0.91 7.46 -52.49 -0.39 0.52 16 30 H 0.39 4.36 7.49 -40.82 -0.31 4.06 16 31 H 0.05 0.90 8.04 -51.93 -0.42 0.49 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 34 H 0.05 1.37 8.06 -51.93 -0.42 0.95 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.08 7.93 -51.93 -0.41 0.66 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -33.03 333.73 -8.05 -41.09 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.82 Total: -0.83 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.67 Total: -8.21 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.56 Total: -41.50 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 35 Polarization: 0.80 SS G_CDS: -2.21 Total: -1.41 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.03 -8.05 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891288832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.904 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds