Wall clock time and date at job start Sat Apr 11 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34240 * 125.74256 * 2 1 4 4 C 1.38062 * 107.43732 * 180.13785 * 3 2 1 5 5 C 1.47394 * 126.42654 * 179.89610 * 4 3 2 6 6 O 1.21604 * 120.00321 * 179.71144 * 5 4 3 7 7 N 1.34780 * 119.99585 * 359.71295 * 5 4 3 8 8 C 1.46498 * 119.99923 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.54083 * 327.61222 * 8 7 5 10 10 C 1.54268 * 110.48389 * 90.22208 * 8 7 5 11 11 C 1.53876 * 106.59607 * 142.28972 * 10 8 7 12 12 C 1.54268 * 106.59992 * 0.02562 * 11 10 8 13 13 H 1.08996 * 110.48777 * 95.06810 * 12 11 10 14 14 C 1.50698 * 110.48760 * 217.71212 * 12 11 10 15 15 H 1.08006 * 120.00324 * 114.76926 * 14 12 11 16 16 C 1.37879 * 120.00291 * 294.77471 * 14 12 11 17 17 N 1.31513 * 119.99457 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00343 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47170 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47199 * 119.99839 * 18 16 14 21 21 H 1.48503 * 109.46820 * 239.99985 * 18 16 14 22 22 C 1.54882 * 110.48722 * 205.00109 * 8 7 5 23 23 C 1.41372 * 107.15565 * 359.63481 * 4 3 2 24 24 Br 1.89094 * 126.00190 * 180.20569 * 23 4 3 25 25 N 1.30516 * 107.99933 * 0.22360 * 23 4 3 26 26 H 1.09000 * 109.47236 * 270.29698 * 1 2 3 27 27 H 1.09001 * 109.47411 * 30.29560 * 1 2 3 28 28 H 1.08998 * 109.47355 * 150.30093 * 1 2 3 29 29 H 1.08002 * 126.28545 * 359.97438 * 3 2 1 30 30 H 0.97002 * 119.99982 * 0.02562 * 7 5 4 31 31 H 1.08994 * 110.03288 * 23.00936 * 10 8 7 32 32 H 1.08998 * 110.03249 * 261.56937 * 10 8 7 33 33 H 1.08998 * 110.03805 * 240.71854 * 11 10 8 34 34 H 1.09002 * 110.03703 * 119.28069 * 11 10 8 35 35 H 0.97000 * 119.99685 * 180.02562 * 17 16 14 36 36 H 1.08994 * 110.76048 * 85.06650 * 22 8 7 37 37 H 1.09004 * 110.75771 * 321.69045 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0896 0.0000 4 6 3.5599 0.6559 -0.0032 5 6 4.7633 1.5070 -0.0065 6 8 5.8678 0.9983 -0.0038 7 7 4.6394 2.8491 -0.0124 8 6 5.8355 3.6950 -0.0152 9 1 6.6450 3.2146 0.5344 10 6 6.2741 4.0050 -1.4613 11 6 6.7711 5.4614 -1.4672 12 6 6.6176 5.9853 -0.0243 13 1 7.5535 5.8746 0.5233 14 6 6.1758 7.4260 -0.0305 15 1 5.2068 7.6955 0.3632 16 6 7.0085 8.4003 -0.5389 17 7 8.1886 8.0723 -1.0179 18 14 6.4612 10.1863 -0.5459 19 1 5.1026 10.2900 0.0447 20 1 7.4126 10.9988 0.2541 21 1 6.4330 10.6898 -1.9427 22 6 5.5182 5.0843 0.5917 23 6 3.5315 -0.7575 0.0035 24 35 5.0387 -1.8994 0.0083 25 7 2.2824 -1.1358 0.0054 26 1 -0.3634 0.0053 1.0276 27 1 -0.3634 0.8873 -0.5184 28 1 -0.3634 -0.8926 -0.5091 29 1 1.9159 2.1169 -0.0004 30 1 3.7583 3.2548 -0.0142 31 1 5.4279 3.8966 -2.1395 32 1 7.0802 3.3343 -1.7589 33 1 6.1660 6.0597 -2.1483 34 1 7.8182 5.4974 -1.7676 35 1 8.7746 8.7577 -1.3752 36 1 5.6030 5.0598 1.6781 37 1 4.5271 5.4213 0.2880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891288832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:46 Heat of formation + Delta-G solvation = 12.603966 kcal Electronic energy + Delta-G solvation = -21109.797700 eV Core-core repulsion = 17740.738275 eV Total energy + Delta-G solvation = -3369.059425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.53115 -40.45457 -38.50069 -35.27683 -34.69954 -33.88143 -32.03089 -31.55577 -29.88522 -28.70035 -27.58963 -25.76325 -23.81851 -22.06785 -21.50010 -21.17303 -20.64936 -18.85782 -18.31496 -17.24812 -16.87902 -16.65401 -16.45723 -16.10878 -15.59529 -15.34121 -15.03553 -14.33726 -14.21075 -14.03557 -13.85468 -13.60967 -13.46098 -13.04109 -12.78624 -12.46694 -12.35690 -12.27859 -12.08607 -12.05824 -11.64298 -11.52681 -11.37414 -11.03468 -10.70506 -10.61641 -10.45322 -10.44313 -10.02841 -9.69186 -8.06726 -6.16409 0.09355 0.42617 0.68728 1.44755 1.46953 1.57585 1.61039 2.32163 2.40835 2.49111 3.25181 3.34804 3.73200 3.97389 4.10248 4.13650 4.25130 4.29279 4.45341 4.46523 4.73696 4.74435 4.80624 4.88520 4.94213 5.08891 5.13462 5.21670 5.40519 5.47928 5.70581 5.71177 5.75943 5.97941 6.02952 6.13505 6.42793 6.74754 6.96523 7.41076 7.51531 9.02931 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.002703 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.404160 B =10355.376710 C =11448.780083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.341 5.341 3 C 0.137 3.863 4 C -0.293 4.293 5 C 0.583 3.417 6 O -0.568 6.568 7 N -0.701 5.701 8 C 0.154 3.846 9 H 0.069 0.931 10 C -0.123 4.123 11 C -0.086 4.086 12 C 0.038 3.962 13 H -0.004 1.004 14 C -0.524 4.524 15 H 0.063 0.937 16 C 0.007 3.993 17 N -0.924 5.924 18 Si 0.954 3.046 19 H -0.260 1.260 20 H -0.287 1.287 21 H -0.284 1.284 22 C -0.103 4.103 23 C 0.101 3.899 24 Br 0.041 6.959 25 N -0.292 5.292 26 H 0.101 0.899 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.242 0.758 30 H 0.412 0.588 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.022 0.978 35 H 0.258 0.742 36 H 0.061 0.939 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.654 -17.816 1.901 26.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.121 5.121 3 C -0.016 4.016 4 C -0.310 4.310 5 C 0.371 3.629 6 O -0.448 6.448 7 N -0.352 5.352 8 C 0.049 3.951 9 H 0.087 0.913 10 C -0.161 4.161 11 C -0.125 4.125 12 C 0.019 3.981 13 H 0.014 0.986 14 C -0.562 4.562 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.563 5.563 18 Si 0.780 3.220 19 H -0.183 1.183 20 H -0.213 1.213 21 H -0.211 1.211 22 C -0.141 4.141 23 C -0.145 4.145 24 Br 0.123 6.877 25 N -0.117 5.117 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.117 0.883 29 H 0.258 0.742 30 H 0.249 0.751 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.173 -19.532 1.834 27.431 hybrid contribution 0.435 1.960 -0.224 2.020 sum -18.738 -17.572 1.610 25.738 Atomic orbital electron populations 1.22619 0.69610 1.07351 1.06060 1.48835 1.08840 1.02532 1.51860 1.23819 0.88150 0.95829 0.93833 1.20154 0.94397 0.91894 1.24510 1.17463 0.87670 0.82131 0.75646 1.90805 1.28059 1.74265 1.51641 1.45694 1.10046 1.04653 1.74844 1.21619 0.87316 0.90329 0.95868 0.91291 1.22484 1.00262 0.96452 0.96936 1.21868 0.98073 0.93064 0.99485 1.19406 0.93177 0.93454 0.92034 0.98558 1.21570 1.02354 0.92743 1.39505 0.91832 1.25820 0.95002 1.03047 0.95274 1.70131 1.09834 1.34305 1.42079 0.85567 0.78693 0.80308 0.77440 1.18341 1.21286 1.21062 1.22658 1.00309 0.92014 0.99103 1.24039 0.93155 0.93709 1.03558 1.96789 1.31681 1.61803 1.97427 1.77273 0.99885 1.09624 1.24894 0.88092 0.84933 0.88343 0.74180 0.75060 0.91069 0.93672 0.94348 0.95875 0.93333 0.92042 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.24 11.44 127.77 1.46 1.71 16 2 N -0.34 -4.81 3.98 -367.79 -1.46 -6.27 16 3 C 0.14 1.86 10.99 84.28 0.93 2.79 16 4 C -0.29 -7.08 6.13 -20.14 -0.12 -7.20 16 5 C 0.58 17.49 7.81 86.65 0.68 18.16 16 6 O -0.57 -21.81 15.07 -4.04 -0.06 -21.87 16 7 N -0.70 -18.37 5.08 -440.75 -2.24 -20.61 16 8 C 0.15 5.27 3.22 46.06 0.15 5.42 16 9 H 0.07 2.69 7.56 -2.39 -0.02 2.67 16 10 C -0.12 -4.61 6.54 31.32 0.20 -4.41 16 11 C -0.09 -4.00 5.60 31.32 0.18 -3.83 16 12 C 0.04 1.85 2.73 -10.45 -0.03 1.82 16 13 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 14 C -0.52 -27.47 8.36 25.60 0.21 -27.26 16 15 H 0.06 3.17 7.77 -2.91 -0.02 3.14 16 16 C 0.01 0.37 5.35 84.66 0.45 0.83 16 17 N -0.92 -53.86 12.63 21.45 0.27 -53.59 16 18 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 20 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 C -0.10 -3.74 5.89 31.89 0.19 -3.55 16 23 C 0.10 2.70 7.75 85.66 0.66 3.36 16 24 Br 0.04 1.15 32.51 -20.37 -0.66 0.49 16 25 N -0.29 -6.78 12.50 -52.20 -0.65 -7.43 16 26 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.13 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.24 0.65 7.46 -2.91 -0.02 0.62 16 30 H 0.41 7.32 7.49 -92.71 -0.69 6.62 16 31 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.84 7.83 -2.39 -0.02 1.82 16 34 H 0.02 1.18 8.06 -2.39 -0.02 1.16 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.62 7.93 -2.38 -0.02 2.60 16 Total: -1.00 -75.51 333.73 2.58 -72.93 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 0.40 Total: 4.03 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.96 Total: -12.16 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -4.08 Total: -87.91 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 35 Polarization: 1.15 SS G_CDS: -0.66 Total: 0.49 kcal Total: -75.51 2.58 -72.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891288832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.530 kcal (2) G-P(sol) polarization free energy of solvation -75.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds