Wall clock time and date at job start Sat Apr 11 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.46522 * 2 1 4 4 C 1.46494 * 120.00009 * 274.91371 * 3 2 1 5 5 C 1.50700 * 109.47636 * 263.62242 * 4 3 2 6 6 H 1.08001 * 119.99311 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00209 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47506 * 119.99744 * 9 7 5 12 12 H 1.48507 * 109.46906 * 239.99922 * 9 7 5 13 13 C 1.34776 * 119.99952 * 94.91842 * 3 2 1 14 14 O 1.21578 * 119.99936 * 4.30804 * 13 3 2 15 15 C 1.47676 * 120.00042 * 184.30747 * 13 3 2 16 16 N 1.31594 * 126.45636 * 354.35076 * 15 13 3 17 17 N 1.29327 * 110.36955 * 180.10401 * 16 15 13 18 18 C 1.35460 * 109.50263 * 359.78895 * 17 16 15 19 19 C 1.35485 * 107.58485 * 0.22735 * 18 17 16 20 20 Br 1.89105 * 127.27154 * 179.81116 * 19 18 17 21 21 C 1.51311 * 110.26706 * 180.34610 * 18 17 16 22 22 C 1.54546 * 104.18196 * 16.52346 * 21 18 17 23 23 C 1.47442 * 139.89257 * 179.70189 * 17 16 15 24 24 H 1.09000 * 109.47378 * 60.00349 * 1 2 3 25 25 H 1.09006 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47853 * 299.99441 * 1 2 3 27 27 H 1.08993 * 109.47459 * 240.00442 * 2 1 3 28 28 H 1.09000 * 109.47378 * 119.99651 * 2 1 3 29 29 H 1.09004 * 109.47199 * 23.62748 * 4 3 2 30 30 H 1.09003 * 109.47169 * 143.62135 * 4 3 2 31 31 H 0.96994 * 119.99845 * 180.02562 * 8 7 5 32 32 H 1.09007 * 110.49000 * 257.85231 * 21 18 17 33 33 H 1.09000 * 110.49197 * 135.20032 * 21 18 17 34 34 H 1.08996 * 110.95036 * 216.56574 * 22 21 18 35 35 H 1.08999 * 110.94734 * 92.85178 * 22 21 18 36 36 H 1.08990 * 110.20942 * 43.72517 * 23 17 16 37 37 H 1.08992 * 110.27755 * 281.85350 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1598 2.1081 -1.2640 5 6 3.5867 2.0153 -1.7399 6 1 4.3151 1.4690 -1.1590 7 6 3.9622 2.6276 -2.9167 8 7 3.0750 3.2923 -3.6243 9 14 5.7308 2.5118 -3.5069 10 1 6.5245 1.7135 -2.5384 11 1 5.7665 1.8542 -4.8378 12 1 6.3074 3.8762 -3.6132 13 6 2.3371 1.9833 1.1629 14 8 2.2947 1.3563 2.2037 15 6 2.7381 3.4046 1.1730 16 7 2.9273 4.1711 0.1202 17 7 3.2746 5.3617 0.4869 18 6 3.3231 5.4223 1.8392 19 6 2.9910 4.1984 2.3160 20 35 2.8884 3.6640 4.1271 21 6 3.7200 6.8119 2.2877 22 6 3.4933 7.6923 1.0380 23 6 3.6332 6.6641 -0.1041 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3635 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.4983 1.6698 -2.0113 30 1 1.8945 3.1546 -1.1131 31 1 3.3392 3.7228 -4.4524 32 1 4.7690 6.8322 2.5835 33 1 3.0846 7.1439 3.1087 34 1 4.2577 8.4655 0.9621 35 1 2.4959 8.1319 1.0467 36 1 2.9503 6.9093 -0.9174 37 1 4.6602 6.6435 -0.4686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896859650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:53 Heat of formation + Delta-G solvation = 66.948744 kcal Electronic energy + Delta-G solvation = -22484.810457 eV Core-core repulsion = 19118.107598 eV Total energy + Delta-G solvation = -3366.702859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44694 -38.77856 -36.18673 -35.09723 -32.62801 -32.14013 -30.72977 -29.63347 -28.72067 -26.99613 -26.60227 -23.90578 -22.93012 -21.77376 -20.95690 -20.11354 -18.12523 -16.85801 -16.39270 -15.88287 -15.76294 -15.23943 -14.54402 -14.33117 -14.06406 -13.77317 -13.36845 -13.16046 -12.72048 -12.64785 -12.39837 -12.19989 -11.83918 -11.71707 -11.52162 -11.50818 -11.20251 -10.89590 -10.85219 -10.66734 -10.41605 -10.09500 -9.96669 -9.67019 -9.46254 -8.92508 -8.64048 -8.35649 -8.24618 -7.56399 -6.02066 -4.03251 2.06290 2.16488 2.31553 2.80535 3.24364 3.32933 3.39538 3.89750 4.12877 4.16469 4.44050 4.46240 4.63620 4.82223 5.21226 5.32656 5.36542 5.42257 5.44997 5.60805 5.64711 5.76612 5.80871 5.82457 5.89330 5.97131 6.33362 6.44070 6.56553 6.72114 6.89302 6.94476 7.52325 7.78746 7.91409 8.27599 8.38494 8.53421 8.98512 9.12186 9.59231 11.05785 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.006291 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.171234 B = 4450.077930 C = 6244.644584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.584 5.584 4 C 0.229 3.771 5 C -0.507 4.507 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.892 5.892 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.286 1.286 13 C 0.597 3.403 14 O -0.551 6.551 15 C 0.017 3.983 16 N -0.155 5.155 17 N -0.308 5.308 18 C 0.005 3.995 19 C -0.145 4.145 20 Br -0.009 7.009 21 C -0.056 4.056 22 C -0.130 4.130 23 C 0.124 3.876 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.259 0.741 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 9.101 10.986 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.314 5.314 4 C 0.109 3.891 5 C -0.547 4.547 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.532 5.532 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.213 1.213 13 C 0.383 3.617 14 O -0.429 6.429 15 C -0.146 4.146 16 N 0.013 4.987 17 N -0.096 5.096 18 C -0.121 4.121 19 C -0.236 4.236 20 Br 0.074 6.926 21 C -0.095 4.095 22 C -0.168 4.168 23 C 0.004 3.996 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.132 8.695 10.570 13.733 hybrid contribution 1.182 0.110 -0.331 1.233 sum 0.051 8.804 10.239 13.504 Atomic orbital electron populations 1.22118 0.96767 1.01223 1.02026 1.21286 0.93434 0.83482 1.02723 1.48153 1.61711 1.13404 1.08153 1.19825 0.97114 0.93564 0.78613 1.21377 0.94797 1.32296 1.06196 0.92813 1.24774 0.96829 0.95231 0.96487 1.69945 1.33325 1.34851 1.15068 0.86642 0.85670 0.77638 0.78677 1.19906 1.20994 1.21272 1.16780 0.77439 0.83564 0.83928 1.90730 1.55723 1.64326 1.32112 1.21849 1.08783 0.96206 0.87754 1.74738 1.12166 0.88474 1.23341 1.47396 1.47381 1.09027 1.05841 1.22085 1.06386 0.96565 0.87107 1.20883 1.16484 0.93813 0.92394 1.96514 1.97868 1.92033 1.06179 1.20737 1.02945 0.87367 0.98434 1.22780 1.04372 0.97004 0.92669 1.22531 1.03196 0.76323 0.97507 0.92508 0.92337 0.92858 0.90593 0.90538 0.95112 0.91412 0.93179 0.88832 0.88806 0.87956 0.89341 0.87940 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.11 2.22 6.18 -4.04 -0.02 2.19 16 3 N -0.58 -13.46 2.47 -176.24 -0.44 -13.90 16 4 C 0.23 5.81 4.79 -5.20 -0.02 5.79 16 5 C -0.51 -13.90 8.48 -34.44 -0.29 -14.20 16 6 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 8 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.60 14.09 7.62 -12.41 -0.09 14.00 16 14 O -0.55 -13.21 15.11 5.30 0.08 -13.13 16 15 C 0.02 0.38 6.80 -82.90 -0.56 -0.18 16 16 N -0.16 -3.50 8.08 33.37 0.27 -3.23 16 17 N -0.31 -5.57 4.42 -55.43 -0.25 -5.81 16 18 C 0.01 0.09 7.48 -81.67 -0.61 -0.52 16 19 C -0.15 -2.81 6.68 -39.34 -0.26 -3.07 16 20 Br -0.01 -0.16 32.72 -68.01 -2.23 -2.39 16 21 C -0.06 -0.58 6.85 -26.77 -0.18 -0.76 16 22 C -0.13 -1.05 7.16 -25.23 -0.18 -1.23 16 23 C 0.12 1.54 7.77 -2.84 -0.02 1.52 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 28 H 0.08 1.48 7.23 -51.93 -0.38 1.10 16 29 H 0.03 0.81 8.02 -51.93 -0.42 0.39 16 30 H 0.07 1.82 5.31 -51.93 -0.28 1.54 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -33.02 330.54 -8.68 -41.70 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -4.84 Total: -3.27 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.98 Total: 2.97 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.32 Total: -47.19 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -2.23 Total: -2.39 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.02 -8.68 -41.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896859650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.644 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds