Wall clock time and date at job start Sat Apr 11 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.46522 * 2 1 4 4 C 1.46494 * 120.00009 * 274.91371 * 3 2 1 5 5 C 1.50700 * 109.47636 * 263.62242 * 4 3 2 6 6 H 1.08001 * 119.99311 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00209 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47506 * 119.99744 * 9 7 5 12 12 H 1.48507 * 109.46906 * 239.99922 * 9 7 5 13 13 C 1.34776 * 119.99952 * 94.91842 * 3 2 1 14 14 O 1.21578 * 119.99936 * 4.30804 * 13 3 2 15 15 C 1.47676 * 120.00042 * 184.30747 * 13 3 2 16 16 N 1.31594 * 126.45636 * 354.35076 * 15 13 3 17 17 N 1.29327 * 110.36955 * 180.10401 * 16 15 13 18 18 C 1.35460 * 109.50263 * 359.78895 * 17 16 15 19 19 C 1.35485 * 107.58485 * 0.22735 * 18 17 16 20 20 Br 1.89105 * 127.27154 * 179.81116 * 19 18 17 21 21 C 1.51311 * 110.26706 * 180.34610 * 18 17 16 22 22 C 1.54546 * 104.18196 * 16.52346 * 21 18 17 23 23 C 1.47442 * 139.89257 * 179.70189 * 17 16 15 24 24 H 1.09000 * 109.47378 * 60.00349 * 1 2 3 25 25 H 1.09006 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47853 * 299.99441 * 1 2 3 27 27 H 1.08993 * 109.47459 * 240.00442 * 2 1 3 28 28 H 1.09000 * 109.47378 * 119.99651 * 2 1 3 29 29 H 1.09004 * 109.47199 * 23.62748 * 4 3 2 30 30 H 1.09003 * 109.47169 * 143.62135 * 4 3 2 31 31 H 0.96994 * 119.99845 * 180.02562 * 8 7 5 32 32 H 1.09007 * 110.49000 * 257.85231 * 21 18 17 33 33 H 1.09000 * 110.49197 * 135.20032 * 21 18 17 34 34 H 1.08996 * 110.95036 * 216.56574 * 22 21 18 35 35 H 1.08999 * 110.94734 * 92.85178 * 22 21 18 36 36 H 1.08990 * 110.20942 * 43.72517 * 23 17 16 37 37 H 1.08992 * 110.27755 * 281.85350 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1598 2.1081 -1.2640 5 6 3.5867 2.0153 -1.7399 6 1 4.3151 1.4690 -1.1590 7 6 3.9622 2.6276 -2.9167 8 7 3.0750 3.2923 -3.6243 9 14 5.7308 2.5118 -3.5069 10 1 6.5245 1.7135 -2.5384 11 1 5.7665 1.8542 -4.8378 12 1 6.3074 3.8762 -3.6132 13 6 2.3371 1.9833 1.1629 14 8 2.2947 1.3563 2.2037 15 6 2.7381 3.4046 1.1730 16 7 2.9273 4.1711 0.1202 17 7 3.2746 5.3617 0.4869 18 6 3.3231 5.4223 1.8392 19 6 2.9910 4.1984 2.3160 20 35 2.8884 3.6640 4.1271 21 6 3.7200 6.8119 2.2877 22 6 3.4933 7.6923 1.0380 23 6 3.6332 6.6641 -0.1041 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3635 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.4983 1.6698 -2.0113 30 1 1.8945 3.1546 -1.1131 31 1 3.3392 3.7228 -4.4524 32 1 4.7690 6.8322 2.5835 33 1 3.0846 7.1439 3.1087 34 1 4.2577 8.4655 0.9621 35 1 2.4959 8.1319 1.0467 36 1 2.9503 6.9093 -0.9174 37 1 4.6602 6.6435 -0.4686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896859650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:53 Heat of formation + Delta-G solvation = 46.576735 kcal Electronic energy + Delta-G solvation = -22485.693854 eV Core-core repulsion = 19118.107598 eV Total energy + Delta-G solvation = -3367.586256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.81413 -40.51882 -37.28371 -36.91829 -34.65568 -33.47569 -32.30765 -30.92488 -30.01279 -28.91079 -27.88481 -25.34222 -24.93225 -22.96945 -22.23504 -21.47749 -19.80708 -18.58761 -17.88023 -17.51434 -17.33228 -16.74840 -16.32595 -16.01353 -15.26265 -15.09103 -14.68413 -14.41812 -14.25845 -14.08149 -13.94716 -13.65522 -13.39420 -13.15428 -13.10728 -12.75704 -12.68948 -12.47510 -12.20584 -12.10185 -11.92043 -11.83292 -11.67609 -11.52054 -11.19826 -10.62470 -10.39353 -10.01672 -9.65636 -9.38787 -8.12047 -6.20475 0.65237 0.71146 0.88731 1.32136 1.35922 1.46516 1.56338 2.27744 2.40468 2.48198 3.11770 3.18655 3.51970 3.61558 3.91346 4.03323 4.07274 4.26425 4.39440 4.47967 4.52756 4.55594 4.57120 4.82503 4.85905 4.95078 5.00841 5.05878 5.13491 5.15828 5.27312 5.41897 5.61279 5.82123 5.94891 6.19054 6.51580 6.82859 7.07308 7.32642 7.46377 8.95055 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.006291 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.171234 B = 4450.077930 C = 6244.644584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.106 3.894 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.516 4.516 6 H 0.032 0.968 7 C 0.032 3.968 8 N -0.914 5.914 9 Si 0.942 3.058 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.275 1.275 13 C 0.588 3.412 14 O -0.565 6.565 15 C -0.017 4.017 16 N -0.201 5.201 17 N -0.314 5.314 18 C 0.026 3.974 19 C -0.176 4.176 20 Br 0.003 6.997 21 C -0.056 4.056 22 C -0.107 4.107 23 C 0.104 3.896 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.014 0.986 30 H 0.057 0.943 31 H 0.263 0.737 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.136 11.215 11.471 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.321 5.321 4 C 0.127 3.873 5 C -0.555 4.555 6 H 0.050 0.950 7 C -0.168 4.168 8 N -0.554 5.554 9 Si 0.768 3.232 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.201 1.201 13 C 0.375 3.625 14 O -0.444 6.444 15 C -0.178 4.178 16 N -0.035 5.035 17 N -0.103 5.103 18 C -0.102 4.102 19 C -0.267 4.267 20 Br 0.086 6.914 21 C -0.094 4.094 22 C -0.145 4.145 23 C -0.014 4.014 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.163 0.837 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.256 10.811 11.042 15.456 hybrid contribution 0.920 -0.493 -0.463 1.142 sum 0.664 10.317 10.579 14.792 Atomic orbital electron populations 1.22013 0.94378 1.03255 1.01223 1.21508 0.95422 0.81927 1.02718 1.48214 1.61977 1.14505 1.07396 1.19424 0.95751 0.93127 0.79035 1.21365 0.95204 1.32472 1.06410 0.94961 1.25361 1.00228 0.94763 0.96413 1.70023 1.34852 1.35136 1.15382 0.85767 0.81354 0.77931 0.78102 1.20773 1.20052 1.20090 1.17104 0.77196 0.84444 0.83767 1.90685 1.56510 1.64995 1.32234 1.21860 1.10547 0.96040 0.89390 1.74507 1.13955 0.90605 1.24388 1.47958 1.46068 1.08973 1.07314 1.22970 1.02943 0.97902 0.86405 1.21126 1.18194 0.94782 0.92575 1.96477 1.97943 1.92263 1.04675 1.21095 1.04582 0.83682 1.00044 1.22880 1.06819 0.95945 0.88849 1.23131 1.03490 0.75141 0.99599 0.93162 0.88854 0.93670 0.90484 0.90532 0.96764 0.92598 0.92765 0.86617 0.86511 0.83676 0.87961 0.88117 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 10.24 71.98 0.74 -4.28 16 2 C 0.11 4.26 6.18 86.38 0.53 4.79 16 3 N -0.59 -28.35 2.47 -829.76 -2.05 -30.41 16 4 C 0.25 13.10 4.79 85.63 0.41 13.51 16 5 C -0.52 -29.08 8.48 25.60 0.22 -28.87 16 6 H 0.03 1.92 7.81 -2.91 -0.02 1.90 16 7 C 0.03 1.76 5.46 84.65 0.46 2.22 16 8 N -0.91 -51.60 13.29 21.45 0.28 -51.31 16 9 Si 0.94 43.93 29.54 68.60 2.03 45.96 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 13 C 0.59 28.84 7.62 86.74 0.66 29.50 16 14 O -0.56 -27.93 15.11 -3.96 -0.06 -27.99 16 15 C -0.02 -0.77 6.80 42.46 0.29 -0.48 16 16 N -0.20 -9.33 8.08 -48.34 -0.39 -9.72 16 17 N -0.31 -11.19 4.42 -329.29 -1.46 -12.65 16 18 C 0.03 0.80 7.48 41.56 0.31 1.11 16 19 C -0.18 -6.84 6.68 22.42 0.15 -6.69 16 20 Br 0.00 0.11 32.72 -20.37 -0.67 -0.56 16 21 C -0.06 -0.93 6.85 30.57 0.21 -0.72 16 22 C -0.11 -1.24 7.16 31.57 0.23 -1.02 16 23 C 0.10 2.38 7.77 86.64 0.67 3.05 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 28 H 0.08 3.03 7.23 -2.39 -0.02 3.01 16 29 H 0.01 0.79 8.02 -2.39 -0.02 0.77 16 30 H 0.06 3.14 5.31 -2.39 -0.01 3.13 16 31 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -74.56 330.54 3.65 -70.92 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.08 Total: 3.64 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 4.88 Total: 12.13 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -3.61 Total: -104.09 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.06 Total: -27.99 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -0.67 Total: -0.56 kcal Total: -74.56 3.65 -70.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896859650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.492 kcal (2) G-P(sol) polarization free energy of solvation -74.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds