Wall clock time and date at job start Sat Apr 11 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47204 * 2 1 4 4 C 1.50706 * 109.46931 * 239.99555 * 2 1 3 5 5 H 1.07996 * 120.00082 * 240.00180 * 4 2 1 6 6 C 1.37883 * 119.99577 * 60.00735 * 4 2 1 7 7 N 1.31510 * 120.00205 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46906 * 59.99730 * 8 6 4 10 10 H 1.48500 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47036 * 300.00058 * 8 6 4 12 12 N 1.46504 * 109.46585 * 120.00238 * 2 1 3 13 13 C 1.46497 * 120.00223 * 60.00407 * 12 2 1 14 14 C 1.34775 * 119.99312 * 239.99278 * 12 2 1 15 15 O 1.21572 * 120.00693 * 355.84203 * 14 12 2 16 16 C 1.47676 * 119.99252 * 175.83579 * 14 12 2 17 17 N 1.31593 * 126.46083 * 5.35086 * 16 14 12 18 18 N 1.29336 * 110.37519 * 179.75786 * 17 16 14 19 19 C 1.35463 * 109.49520 * 0.61116 * 18 17 16 20 20 C 1.35490 * 107.58865 * 359.53213 * 19 18 17 21 21 Br 1.89100 * 127.27546 * 180.11276 * 20 19 18 22 22 C 1.51310 * 110.26795 * 179.41914 * 19 18 17 23 23 C 1.54536 * 104.17996 * 343.48493 * 22 19 18 24 24 C 1.47424 * 139.90133 * 180.37425 * 18 17 16 25 25 H 1.09006 * 109.46713 * 59.99767 * 1 2 3 26 26 H 1.08999 * 109.47140 * 299.99990 * 1 2 3 27 27 H 1.08995 * 109.47451 * 179.97438 * 1 2 3 28 28 H 0.97002 * 120.00255 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47679 * 95.71961 * 13 12 2 30 30 H 1.08999 * 109.46757 * 215.72053 * 13 12 2 31 31 H 1.08999 * 109.47072 * 335.71686 * 13 12 2 32 32 H 1.09010 * 110.48998 * 102.15640 * 22 19 18 33 33 H 1.08998 * 110.49047 * 224.80506 * 22 19 18 34 34 H 1.09005 * 110.95006 * 267.14272 * 23 22 19 35 35 H 1.08996 * 110.98565 * 143.44809 * 23 22 19 36 36 H 1.08999 * 110.21115 * 316.60969 * 24 18 17 37 37 H 1.08999 * 110.21468 * 78.51673 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8269 -0.4199 -5.2205 11 1 3.8075 -1.1192 -4.0077 12 7 2.0182 -0.6907 1.1962 13 6 1.6643 -2.0933 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.1495 1.1039 1.8543 16 6 3.2093 -0.7023 3.3336 17 7 2.9822 -1.9555 3.6647 18 7 3.4883 -2.2131 4.8267 19 6 4.0740 -1.0967 5.3222 20 6 3.9218 -0.1124 4.4037 21 35 4.5319 1.6733 4.5268 22 6 4.6601 -1.3749 6.6892 23 6 3.9815 -2.6910 7.1313 24 6 3.6221 -3.3338 5.7752 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.4651 -2.7355 1.0615 30 1 1.5241 -2.2609 2.4958 31 1 0.7404 -2.3270 0.8991 32 1 5.7402 -1.5065 6.6217 33 1 4.4156 -0.5685 7.3805 34 1 3.0846 -2.4894 7.7170 35 1 4.6755 -3.3199 7.6889 36 1 2.6795 -3.8756 5.8533 37 1 4.4180 -4.0058 5.4543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896884717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:57 Heat of formation + Delta-G solvation = 72.335949 kcal Electronic energy + Delta-G solvation = -21940.741557 eV Core-core repulsion = 18574.272305 eV Total energy + Delta-G solvation = -3366.469252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.88522 -38.78915 -36.55044 -35.23613 -32.76584 -32.48612 -30.28166 -29.75982 -28.66374 -27.12904 -25.93387 -25.13311 -23.67228 -21.80828 -20.64550 -20.35308 -18.22594 -17.19664 -16.42656 -16.25205 -15.77160 -15.24061 -14.93602 -14.43268 -14.15080 -13.88239 -13.61116 -13.01108 -12.97504 -12.58763 -12.48534 -12.19061 -12.07161 -11.78180 -11.54573 -11.44239 -10.99505 -10.92555 -10.76195 -10.67704 -10.29059 -10.19589 -10.06608 -9.91336 -9.11246 -9.02307 -8.90034 -8.57309 -8.34920 -7.45564 -5.99180 -4.06379 1.69269 1.78960 1.99149 2.37354 3.34151 3.38452 3.41093 3.63840 3.96382 4.01192 4.12555 4.28073 4.44205 4.51888 4.77980 4.97824 5.01846 5.15079 5.29431 5.31786 5.41697 5.42848 5.48590 6.03529 6.17300 6.28890 6.47934 6.65833 6.86438 6.93875 7.13772 7.53961 7.60057 7.79611 7.98095 8.10579 8.27744 8.60750 8.91159 9.11908 9.59390 11.06175 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003953 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.124163 B = 7081.249842 C = 8138.251763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.575 5.575 13 C 0.084 3.916 14 C 0.580 3.420 15 O -0.523 6.523 16 C 0.038 3.962 17 N -0.230 5.230 18 N -0.315 5.315 19 C 0.021 3.979 20 C -0.145 4.145 21 Br 0.005 6.995 22 C -0.059 4.059 23 C -0.130 4.130 24 C 0.123 3.877 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.295 -7.380 22.988 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.306 5.306 13 C -0.060 4.060 14 C 0.363 3.637 15 O -0.398 6.398 16 C -0.125 4.125 17 N -0.063 5.063 18 N -0.103 5.103 19 C -0.107 4.107 20 C -0.235 4.235 21 Br 0.089 6.911 22 C -0.098 4.098 23 C -0.169 4.169 24 C 0.004 3.996 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.001 -7.209 22.282 24.176 hybrid contribution 0.490 -0.419 -0.732 0.975 sum 6.491 -7.629 21.550 23.764 Atomic orbital electron populations 1.22104 0.98089 0.99441 1.00892 1.19010 0.90878 0.94574 0.79662 0.91631 1.21282 1.31697 1.12915 0.90213 0.92335 1.24874 0.94995 0.94997 0.98859 1.69868 1.36442 1.22631 1.23769 0.86556 0.79265 0.79543 0.82013 1.20300 1.21195 1.20261 1.48126 1.47768 1.12011 1.22704 1.21857 1.00564 0.82291 1.01274 1.16862 0.80108 0.85557 0.81182 1.90806 1.55773 1.17167 1.76100 1.22373 1.02704 0.89759 0.97665 1.73966 1.17623 1.16918 0.97794 1.47241 1.39307 1.10925 1.12801 1.22119 1.02142 0.88704 0.97710 1.21033 1.11324 0.94067 0.97109 1.96617 1.87182 1.09225 1.98099 1.20791 1.00651 0.98167 0.90175 1.22789 1.02528 0.96388 0.95158 1.22597 1.04489 0.86662 0.85873 0.88683 0.96907 0.95071 0.92689 0.93716 0.90565 0.91235 0.88441 0.88374 0.89153 0.87655 0.88083 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 8.96 37.16 0.33 -3.33 16 2 C 0.26 6.95 2.63 -69.08 -0.18 6.77 16 3 H 0.07 2.00 6.91 -51.93 -0.36 1.65 16 4 C -0.52 -14.75 8.37 -34.44 -0.29 -15.04 16 5 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 6 C 0.06 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.58 -13.64 2.75 -176.44 -0.49 -14.13 16 13 C 0.08 1.67 8.88 59.85 0.53 2.21 16 14 C 0.58 13.65 7.68 -12.41 -0.10 13.56 16 15 O -0.52 -13.69 14.96 5.30 0.08 -13.61 16 16 C 0.04 0.75 6.83 -82.89 -0.57 0.19 16 17 N -0.23 -3.91 8.71 33.37 0.29 -3.62 16 18 N -0.31 -4.06 4.42 -55.44 -0.25 -4.31 16 19 C 0.02 0.27 7.48 -81.67 -0.61 -0.34 16 20 C -0.14 -2.46 6.68 -39.34 -0.26 -2.73 16 21 Br 0.01 0.08 32.72 -68.01 -2.23 -2.14 16 22 C -0.06 -0.42 6.85 -26.78 -0.18 -0.60 16 23 C -0.13 -0.53 7.16 -25.24 -0.18 -0.71 16 24 C 0.12 0.82 7.77 -2.85 -0.02 0.80 16 25 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.03 0.72 6.67 -51.93 -0.35 0.37 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.38 5.26 -51.93 -0.27 1.11 16 31 H 0.07 1.36 6.44 -51.93 -0.33 1.02 16 32 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -34.48 322.76 -8.28 -42.76 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -4.55 Total: -3.90 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.62 Total: 2.51 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.19 Total: -47.17 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -2.23 Total: -2.14 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.48 -8.28 -42.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896884717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.096 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds