Wall clock time and date at job start Sat Apr 11 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47204 * 2 1 4 4 C 1.50706 * 109.46931 * 239.99555 * 2 1 3 5 5 H 1.07996 * 120.00082 * 240.00180 * 4 2 1 6 6 C 1.37883 * 119.99577 * 60.00735 * 4 2 1 7 7 N 1.31510 * 120.00205 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46906 * 59.99730 * 8 6 4 10 10 H 1.48500 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47036 * 300.00058 * 8 6 4 12 12 N 1.46504 * 109.46585 * 120.00238 * 2 1 3 13 13 C 1.46497 * 120.00223 * 60.00407 * 12 2 1 14 14 C 1.34775 * 119.99312 * 239.99278 * 12 2 1 15 15 O 1.21572 * 120.00693 * 355.84203 * 14 12 2 16 16 C 1.47676 * 119.99252 * 175.83579 * 14 12 2 17 17 N 1.31593 * 126.46083 * 5.35086 * 16 14 12 18 18 N 1.29336 * 110.37519 * 179.75786 * 17 16 14 19 19 C 1.35463 * 109.49520 * 0.61116 * 18 17 16 20 20 C 1.35490 * 107.58865 * 359.53213 * 19 18 17 21 21 Br 1.89100 * 127.27546 * 180.11276 * 20 19 18 22 22 C 1.51310 * 110.26795 * 179.41914 * 19 18 17 23 23 C 1.54536 * 104.17996 * 343.48493 * 22 19 18 24 24 C 1.47424 * 139.90133 * 180.37425 * 18 17 16 25 25 H 1.09006 * 109.46713 * 59.99767 * 1 2 3 26 26 H 1.08999 * 109.47140 * 299.99990 * 1 2 3 27 27 H 1.08995 * 109.47451 * 179.97438 * 1 2 3 28 28 H 0.97002 * 120.00255 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47679 * 95.71961 * 13 12 2 30 30 H 1.08999 * 109.46757 * 215.72053 * 13 12 2 31 31 H 1.08999 * 109.47072 * 335.71686 * 13 12 2 32 32 H 1.09010 * 110.48998 * 102.15640 * 22 19 18 33 33 H 1.08998 * 110.49047 * 224.80506 * 22 19 18 34 34 H 1.09005 * 110.95006 * 267.14272 * 23 22 19 35 35 H 1.08996 * 110.98565 * 143.44809 * 23 22 19 36 36 H 1.08999 * 110.21115 * 316.60969 * 24 18 17 37 37 H 1.08999 * 110.21468 * 78.51673 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8269 -0.4199 -5.2205 11 1 3.8075 -1.1192 -4.0077 12 7 2.0182 -0.6907 1.1962 13 6 1.6643 -2.0933 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.1495 1.1039 1.8543 16 6 3.2093 -0.7023 3.3336 17 7 2.9822 -1.9555 3.6647 18 7 3.4883 -2.2131 4.8267 19 6 4.0740 -1.0967 5.3222 20 6 3.9218 -0.1124 4.4037 21 35 4.5319 1.6733 4.5268 22 6 4.6601 -1.3749 6.6892 23 6 3.9815 -2.6910 7.1313 24 6 3.6221 -3.3338 5.7752 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.4651 -2.7355 1.0615 30 1 1.5241 -2.2609 2.4958 31 1 0.7404 -2.3270 0.8991 32 1 5.7402 -1.5065 6.6217 33 1 4.4156 -0.5685 7.3805 34 1 3.0846 -2.4894 7.7170 35 1 4.6755 -3.3199 7.6889 36 1 2.6795 -3.8756 5.8533 37 1 4.4180 -4.0058 5.4543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896884717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:56 Heat of formation + Delta-G solvation = 49.422293 kcal Electronic energy + Delta-G solvation = -21941.735168 eV Core-core repulsion = 18574.272305 eV Total energy + Delta-G solvation = -3367.462863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.98616 -40.54823 -37.39533 -37.15893 -34.79653 -33.60701 -31.85666 -30.95441 -29.97229 -28.13717 -27.56734 -27.28236 -25.02676 -22.61942 -22.13426 -21.60161 -19.89560 -18.49478 -18.03962 -17.56234 -17.26859 -17.00277 -16.24966 -16.10792 -15.31767 -15.02259 -14.71299 -14.44382 -14.18803 -14.05052 -13.92936 -13.53237 -13.30355 -13.24632 -12.96110 -12.72511 -12.71253 -12.48387 -12.20990 -12.16089 -12.13648 -11.96289 -11.64048 -11.39500 -11.20120 -10.61042 -10.47698 -10.13271 -9.77191 -9.33582 -8.14390 -6.30977 0.42897 0.66508 0.75266 1.38982 1.40944 1.43622 1.51219 2.24276 2.31578 2.46700 3.05951 3.12961 3.38628 3.52652 3.90719 4.01053 4.04245 4.30398 4.47686 4.50452 4.56603 4.71485 4.75666 4.84732 4.87082 4.89952 5.03762 5.04846 5.10573 5.16320 5.43142 5.49044 5.63471 5.66792 6.01752 6.14628 6.69249 6.73777 6.84555 7.24930 7.42847 8.90053 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003953 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.124163 B = 7081.249842 C = 8138.251763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.263 3.737 3 H 0.016 0.984 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.966 3.034 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.586 5.586 13 C 0.092 3.908 14 C 0.571 3.429 15 O -0.565 6.565 16 C 0.000 4.000 17 N -0.239 5.239 18 N -0.304 5.304 19 C 0.040 3.960 20 C -0.178 4.178 21 Br -0.003 7.003 22 C -0.062 4.062 23 C -0.112 4.112 24 C 0.104 3.896 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.046 0.954 28 H 0.266 0.734 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 -10.443 25.419 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.034 0.966 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.205 1.205 12 N -0.316 5.316 13 C -0.051 4.051 14 C 0.357 3.643 15 O -0.444 6.444 16 C -0.161 4.161 17 N -0.074 5.074 18 N -0.093 5.093 19 C -0.089 4.089 20 C -0.269 4.269 21 Br 0.080 6.920 22 C -0.100 4.100 23 C -0.150 4.150 24 C -0.012 4.012 25 H 0.092 0.908 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.164 0.836 36 H 0.137 0.863 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.762 -10.318 24.745 27.650 hybrid contribution 0.298 0.461 -1.334 1.442 sum 7.060 -9.857 23.411 26.365 Atomic orbital electron populations 1.21887 0.96785 1.00152 1.00167 1.18653 0.91810 0.92359 0.81041 0.96645 1.21479 1.32160 1.13044 0.91200 0.92736 1.25710 0.94982 0.95639 1.01843 1.70002 1.37071 1.23708 1.24586 0.85503 0.78334 0.78993 0.78134 1.18770 1.20421 1.20452 1.48118 1.48108 1.13341 1.22015 1.21936 1.00416 0.80073 1.02671 1.17411 0.79276 0.85318 0.82298 1.90752 1.57192 1.19036 1.77393 1.21707 1.05914 0.91352 0.97150 1.73714 1.18162 1.15598 0.99907 1.47939 1.36971 1.12735 1.11620 1.22888 0.99927 0.87064 0.99009 1.21204 1.12878 0.94833 0.97963 1.96566 1.87182 1.10217 1.98029 1.21159 1.01809 1.00316 0.86707 1.22907 1.03635 0.94686 0.93723 1.23336 1.06458 0.85660 0.85751 0.90807 0.96109 0.93471 0.92480 0.93725 0.88536 0.91073 0.86384 0.87041 0.88113 0.83551 0.86343 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 8.96 71.98 0.64 -6.12 16 2 C 0.26 14.81 2.63 44.25 0.12 14.92 16 3 H 0.02 1.02 6.91 -2.39 -0.02 1.01 16 4 C -0.54 -31.39 8.37 25.60 0.21 -31.18 16 5 H 0.05 3.13 7.65 -2.91 -0.02 3.11 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.92 -54.40 11.32 21.45 0.24 -54.16 16 8 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 9 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 N -0.59 -28.87 2.75 -830.40 -2.29 -31.16 16 13 C 0.09 3.67 8.88 127.77 1.14 4.81 16 14 C 0.57 28.28 7.68 86.74 0.67 28.94 16 15 O -0.57 -31.65 14.96 -3.94 -0.06 -31.71 16 16 C 0.00 -0.01 6.83 42.47 0.29 0.28 16 17 N -0.24 -7.89 8.71 -48.34 -0.42 -8.31 16 18 N -0.30 -7.01 4.42 -329.30 -1.46 -8.47 16 19 C 0.04 0.94 7.48 41.56 0.31 1.25 16 20 C -0.18 -6.06 6.68 22.43 0.15 -5.91 16 21 Br 0.00 -0.12 32.72 -20.37 -0.67 -0.78 16 22 C -0.06 -0.59 6.85 30.56 0.21 -0.38 16 23 C -0.11 -0.26 7.16 31.56 0.23 -0.03 16 24 C 0.10 0.90 7.77 86.65 0.67 1.58 16 25 H 0.07 4.12 6.07 -2.38 -0.01 4.11 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 2.21 6.67 -2.39 -0.02 2.20 16 28 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 3.45 5.26 -2.39 -0.01 3.44 16 31 H 0.07 2.76 6.44 -2.39 -0.02 2.75 16 32 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.12 8.14 -2.38 -0.02 0.10 16 35 H 0.15 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -80.87 322.76 3.56 -77.31 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.10 Total: 0.75 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.08 Total: 9.63 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.92 Total: -102.10 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.06 Total: -31.71 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.67 Total: -0.78 kcal Total: -80.87 3.56 -77.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896884717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.729 kcal (2) G-P(sol) polarization free energy of solvation -80.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds